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The map label for this gene is nodD3 [H]

Identifier: 209548629

GI number: 209548629

Start: 1045930

End: 1046865

Strand: Reverse

Name: nodD3 [H]

Synonym: Rleg2_1026

Alternate gene names: 209548629

Gene position: 1046865-1045930 (Counterclockwise)

Preceding gene: 209548633

Following gene: 209548627

Centisome position: 23.07

GC content: 58.23

Gene sequence:

>936_bases
ATGAATGAAATTGTCTCCATCGATCATTTCAATTTGTGGTCTTTCGACCTCAACCTGCTCGTCGCCTTCGATGCGCTCAT
GAAGGAGCGGAGCGTGACGAAAGCGGCTGTCCGGCTGAAAATCCAGCAGCCTGCCATGAGCCACAATCTCGGCACTCTCC
GGACCCTGCTTCAGGACGAGCTGTTCGTACGTGTCGGCCAGGTCATGCAGCCGACCCATCGGGCGCTGCGCTTCGCCGAA
GCCGTAGAGCACATACTCAGTCGCACGCAGCTGGCGATCGTAACGCCTGCGACCTTCGAGCCGGGCGAGGCCGAGCAGAT
ATTCCGCATCGGCTTTTCCAGCGAGCTTGAGGTGCTGCTCGTGCCGCGTCTCGCCGCTATGTTGAATGAGATGGCCCCCG
GTATCAGAGTGCTTGCGCGAGCGGTCAACCCCGAGCTGGTCCATAAGCTTTTGGACGACAATGTCATAGACCTTGGCGTC
GGCTGCTACGATGACGGCAACAACAGACACCGGCGGAGCCTGCTGTTCGAGCAATCGCTGATGTGTTGCTACAATCCGAA
GCTTCTTGATCTTCCCGAAACCTTGGACCGTGACGCCTATATCGGGCTCAAGCATGCCCTGGTTTCCCAGAAGGACGCCA
TCGAAGGCTGCATTGATGATGCGTTGAAGCGGATCAACGTGCGGCTCGACGTCTCTGTGGCAGCACCAGAATTCCTCACC
GTGCTGACCGCCGTCCTCGAAGCGCCCCTGATCGCCACTCTGCCGACCAGAATTGTGAAGCGGTATGCCGGTCTGTTCGG
CTTGGCGATGGCCGAAGTTCCACTCGATCTAAAGGTGAGCCCGATATCGATGGTTTGGTCGGCGGCAGGTGACAATGATC
CCGCCAACCGATGGATGCGTTCTCAGGTGACGCAGCTTGTTTCGGCCTATAGCTGA

Upstream 100 bases:

>100_bases
AAGATCGCTCATGGAACTTCCTTTCGAGTTGAACTGGAACCGGGACAGCGCTGTCTGATGGCTATGGACAGTAGGGAAAA
TTCGTGCAACGATCAAATCG

Downstream 100 bases:

>100_bases
ATTTGCCGGCGAAACGGCGGGCGCTCCGGGGGCTGCTACGCCACCTACATCTTCGAGATCACCGCATCCTCGCCGTCACG
ATCGGCGGCGAGCTGGGCTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MNEIVSIDHFNLWSFDLNLLVAFDALMKERSVTKAAVRLKIQQPAMSHNLGTLRTLLQDELFVRVGQVMQPTHRALRFAE
AVEHILSRTQLAIVTPATFEPGEAEQIFRIGFSSELEVLLVPRLAAMLNEMAPGIRVLARAVNPELVHKLLDDNVIDLGV
GCYDDGNNRHRRSLLFEQSLMCCYNPKLLDLPETLDRDAYIGLKHALVSQKDAIEGCIDDALKRINVRLDVSVAAPEFLT
VLTAVLEAPLIATLPTRIVKRYAGLFGLAMAEVPLDLKVSPISMVWSAAGDNDPANRWMRSQVTQLVSAYS

Sequences:

>Translated_311_residues
MNEIVSIDHFNLWSFDLNLLVAFDALMKERSVTKAAVRLKIQQPAMSHNLGTLRTLLQDELFVRVGQVMQPTHRALRFAE
AVEHILSRTQLAIVTPATFEPGEAEQIFRIGFSSELEVLLVPRLAAMLNEMAPGIRVLARAVNPELVHKLLDDNVIDLGV
GCYDDGNNRHRRSLLFEQSLMCCYNPKLLDLPETLDRDAYIGLKHALVSQKDAIEGCIDDALKRINVRLDVSVAAPEFLT
VLTAVLEAPLIATLPTRIVKRYAGLFGLAMAEVPLDLKVSPISMVWSAAGDNDPANRWMRSQVTQLVSAYS
>Mature_311_residues
MNEIVSIDHFNLWSFDLNLLVAFDALMKERSVTKAAVRLKIQQPAMSHNLGTLRTLLQDELFVRVGQVMQPTHRALRFAE
AVEHILSRTQLAIVTPATFEPGEAEQIFRIGFSSELEVLLVPRLAAMLNEMAPGIRVLARAVNPELVHKLLDDNVIDLGV
GCYDDGNNRHRRSLLFEQSLMCCYNPKLLDLPETLDRDAYIGLKHALVSQKDAIEGCIDDALKRINVRLDVSVAAPEFLT
VLTAVLEAPLIATLPTRIVKRYAGLFGLAMAEVPLDLKVSPISMVWSAAGDNDPANRWMRSQVTQLVSAYS

Specific function: NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=296, Percent_Identity=28.3783783783784, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1790147, Length=306, Percent_Identity=22.8758169934641, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34608; Mature: 34608

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEIVSIDHFNLWSFDLNLLVAFDALMKERSVTKAAVRLKIQQPAMSHNLGTLRTLLQDE
CCCCEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHCCHHHHHHHHHHH
LFVRVGQVMQPTHRALRFAEAVEHILSRTQLAIVTPATFEPGEAEQIFRIGFSSELEVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHCCCCCCCCCEEH
VPRLAAMLNEMAPGIRVLARAVNPELVHKLLDDNVIDLGVGCYDDGNNRHRRSLLFEQSL
HHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHCCCEEEECCEECCCCCCHHHHHHHHHHHH
MCCYNPKLLDLPETLDRDAYIGLKHALVSQKDAIEGCIDDALKRINVRLDVSVAAPEFLT
HHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCHHHHH
VLTAVLEAPLIATLPTRIVKRYAGLFGLAMAEVPLDLKVSPISMVWSAAGDNDPANRWMR
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCHHHHHHH
SQVTQLVSAYS
HHHHHHHHHCC
>Mature Secondary Structure
MNEIVSIDHFNLWSFDLNLLVAFDALMKERSVTKAAVRLKIQQPAMSHNLGTLRTLLQDE
CCCCEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHCCHHHHHHHHHHH
LFVRVGQVMQPTHRALRFAEAVEHILSRTQLAIVTPATFEPGEAEQIFRIGFSSELEVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHCCCCCCCCCEEH
VPRLAAMLNEMAPGIRVLARAVNPELVHKLLDDNVIDLGVGCYDDGNNRHRRSLLFEQSL
HHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHCCCEEEECCEECCCCCCHHHHHHHHHHHH
MCCYNPKLLDLPETLDRDAYIGLKHALVSQKDAIEGCIDDALKRINVRLDVSVAAPEFLT
HHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCHHHHH
VLTAVLEAPLIATLPTRIVKRYAGLFGLAMAEVPLDLKVSPISMVWSAAGDNDPANRWMR
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCHHHHHHH
SQVTQLVSAYS
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2215216 [H]