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The map label for this gene is rpoZ

Identifier: 209548595

GI number: 209548595

Start: 1015400

End: 1015804

Strand: Direct

Name: rpoZ

Synonym: Rleg2_0992

Alternate gene names: 209548595

Gene position: 1015400-1015804 (Clockwise)

Preceding gene: 209548593

Following gene: 209548596

Centisome position: 22.38

GC content: 61.73

Gene sequence:

>405_bases
ATGGCCCGTGTCACAGTTGAAGATTGCATCGACAAGGTGGAGAACCGCTTCGAGCTGGTTCTGCTCGCCAGCCACCGCGC
CCGGCTGATTTCCCAGGGCGCCTCGATCACCATCGATCGCGACAACGACAAGAACCCGGTCGTCGCCCTGCGCGAAATCG
CCGACGAGACGCTTTCGCCCGATGACCTCAAGGAAGATCTGATCCATTCGCTGCAGAAGCATGTCGAAGTCGACGAGCCC
GAGCCCGATCCGGCCAGCATGATCGCCGCCGGCGGTGTCGCCGCAGCCGACAGCGAAGAGCAGGACGACCTGCCGGAAAC
GATCACTTTCGACCAGATGTCGGAAGAAGAGCTGCTTGCCGGCATCGAAGGCCTGGTGCCGCCGGAAAAGAGCGACGACT
ACTAA

Upstream 100 bases:

>100_bases
TTATAAAGACGAGGGGAGCCGGAATGAAAAACTTGTATTTGCCCGGTTTTAATTGTATCGGGCGTGCTAATCCCGAAATG
ACGACCGTAAAGGACAGGCA

Downstream 100 bases:

>100_bases
GGCGCGAAGCTGATCCCCGGTCGTATGTGATCCCAATCGCAGGCGAACCGGAAATCATGCGATGCGAAAGAGCGATGATT
ACCAATCGTCAATCTTGCGC

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MARVTVEDCIDKVENRFELVLLASHRARLISQGASITIDRDNDKNPVVALREIADETLSPDDLKEDLIHSLQKHVEVDEP
EPDPASMIAAGGVAAADSEEQDDLPETITFDQMSEEELLAGIEGLVPPEKSDDY

Sequences:

>Translated_134_residues
MARVTVEDCIDKVENRFELVLLASHRARLISQGASITIDRDNDKNPVVALREIADETLSPDDLKEDLIHSLQKHVEVDEP
EPDPASMIAAGGVAAADSEEQDDLPETITFDQMSEEELLAGIEGLVPPEKSDDY
>Mature_133_residues
ARVTVEDCIDKVENRFELVLLASHRARLISQGASITIDRDNDKNPVVALREIADETLSPDDLKEDLIHSLQKHVEVDEPE
PDPASMIAAGGVAAADSEEQDDLPETITFDQMSEEELLAGIEGLVPPEKSDDY

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_RHIE6 (B3PUN2)

Other databases:

- EMBL:   CP001074
- RefSeq:   YP_001977609.1
- GeneID:   6399539
- GenomeReviews:   CP001074_GR
- KEGG:   rec:RHECIAT_CH0001452
- HOGENOM:   HBG742204
- OMA:   KVDNRFE
- ProtClustDB:   PRK00392
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 14724; Mature: 14593

Theoretical pI: Translated: 3.86; Mature: 3.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCIDKVENRFELVLLASHRARLISQGASITIDRDNDKNPVVALREIADETLSP
CCCCCHHHHHHHHHHHHEEEEEHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCH
DDLKEDLIHSLQKHVEVDEPEPDPASMIAAGGVAAADSEEQDDLPETITFDQMSEEELLA
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCHHHHHH
GIEGLVPPEKSDDY
HHHCCCCCCCCCCC
>Mature Secondary Structure 
ARVTVEDCIDKVENRFELVLLASHRARLISQGASITIDRDNDKNPVVALREIADETLSP
CCCCHHHHHHHHHHHHEEEEEHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCH
DDLKEDLIHSLQKHVEVDEPEPDPASMIAAGGVAAADSEEQDDLPETITFDQMSEEELLA
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCHHHHHH
GIEGLVPPEKSDDY
HHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA