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The map label for this gene is ccmH [H]

Identifier: 209548526

GI number: 209548526

Start: 937469

End: 937930

Strand: Direct

Name: ccmH [H]

Synonym: Rleg2_0923

Alternate gene names: 209548526

Gene position: 937469-937930 (Clockwise)

Preceding gene: 209548525

Following gene: 209548527

Centisome position: 20.66

GC content: 63.85

Gene sequence:

>462_bases
ATGCGGCTGCTCTCCCGTCTCCTCGTCACTCTGTTCATCCTTTTTACCCCTTTGTCCGCCTTCGCCGTCAATCCGGACGA
GGTGCTGGCGGACCCGGCACTGGAAGCCCGCGCTCGCGCCCTGTCGGCGGAACTGCGCTGCATGGTCTGCCAGAACCAGT
CGATCGACGATTCCAATGCCGATCTCGCCAAGGATCTGCGTCTGCTGGTGCGCGAGCGCATCACCGACGGCGACAGCGAC
GAGGCGGTGCTGAACTATATCGTCTCGCGCTACGGCGAATTCGTGCTGCTGAAACCGCGGTTCAGCATGAAGACCGGCCT
GCTCTGGGGCGCCCCGGCGCTGCTGGTGCTCGCCGGCGGACTGTCACTGCTGGTCTTTGCCCGCAGGCGCTCAGGCAAGC
CGACGGGCAGCAAGCTGACGGCGGATGAACAGGCAAAGTTGAGCGAGCTTCTGGAAAAGTAG

Upstream 100 bases:

>100_bases
CCGCGAGGAGCTTGAGCGCAAGCGAAAGGTCGTCTTTGCTGCGAGTGGCCGCCCCCTCATCCGCCCTGTCGGGCACCTTC
TCCCCGAGGGGAGAAGGGGA

Downstream 100 bases:

>100_bases
CGAGCTGAAGGCAGCAATCGCCCGCCGCGACCAAACATTTTCATACATTACCAATTTTTCATTGGCCGGACAGTTCGCAG
TAAGGTGCGCCATCCTATAT

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycL [H]

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MRLLSRLLVTLFILFTPLSAFAVNPDEVLADPALEARARALSAELRCMVCQNQSIDDSNADLAKDLRLLVRERITDGDSD
EAVLNYIVSRYGEFVLLKPRFSMKTGLLWGAPALLVLAGGLSLLVFARRRSGKPTGSKLTADEQAKLSELLEK

Sequences:

>Translated_153_residues
MRLLSRLLVTLFILFTPLSAFAVNPDEVLADPALEARARALSAELRCMVCQNQSIDDSNADLAKDLRLLVRERITDGDSD
EAVLNYIVSRYGEFVLLKPRFSMKTGLLWGAPALLVLAGGLSLLVFARRRSGKPTGSKLTADEQAKLSELLEK
>Mature_153_residues
MRLLSRLLVTLFILFTPLSAFAVNPDEVLADPALEARARALSAELRCMVCQNQSIDDSNADLAKDLRLLVRERITDGDSD
EAVLNYIVSRYGEFVLLKPRFSMKTGLLWGAPALLVLAGGLSLLVFARRRSGKPTGSKLTADEQAKLSELLEK

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=115, Percent_Identity=40, Blast_Score=82, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 16833; Mature: 16833

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLSRLLVTLFILFTPLSAFAVNPDEVLADPALEARARALSAELRCMVCQNQSIDDSNA
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHHHHHHEECCCCCCCCCH
DLAKDLRLLVRERITDGDSDEAVLNYIVSRYGEFVLLKPRFSMKTGLLWGAPALLVLAGG
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHCCHHCHHHHHHHHHH
LSLLVFARRRSGKPTGSKLTADEQAKLSELLEK
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHC
>Mature Secondary Structure
MRLLSRLLVTLFILFTPLSAFAVNPDEVLADPALEARARALSAELRCMVCQNQSIDDSNA
CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHHHHHHEECCCCCCCCCH
DLAKDLRLLVRERITDGDSDEAVLNYIVSRYGEFVLLKPRFSMKTGLLWGAPALLVLAGG
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHCCHHCHHHHHHHHHH
LSLLVFARRRSGKPTGSKLTADEQAKLSELLEK
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]