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The map label for this gene is omp25 [H]

Identifier: 209548422

GI number: 209548422

Start: 834263

End: 834877

Strand: Reverse

Name: omp25 [H]

Synonym: Rleg2_0819

Alternate gene names: 209548422

Gene position: 834877-834263 (Counterclockwise)

Preceding gene: 209548423

Following gene: 209548418

Centisome position: 18.4

GC content: 60.49

Gene sequence:

>615_bases
ATGCATATCAGACTTATCGCCTGCGCCGTCCTGGCGCTTTCGGCCGCCGTTCCCGCCGTTGCCGCCGACCTCACTTACGA
GACGCCGGCTCCCGCCGCCGAGCAGATATCTTCGGCCTATAACTGGTCGGGCTTCTATCTCGGCGGCCAGGGCGGATATT
CCTGGAGCCAGACGAAGATCCTCGGCTCGGATGAAAATATCGACGGCGGCACGGCCGGCCTGCATGCCGGATATAATTTC
CAATCCGGAAATATCGTCTACGGCATCGAGAACGACTTCAACTACAACTTCAAGAAAAACGACGATGCCAACCTCGAATG
GGATGCATCCGGCCGGGCGCGGGTTGGCTACGCCTTGAATCGAACCCTGTTCTTCGCAACGGCGGGTGTGGCGGCCGGCG
GCGGCAAGGTCGACATTCCCACCGCTGGAAAGAAGGATGGCATCCTGATCGGCTGGACGGCCGGCGGCGGCATCGAACAC
GCGGTCACCGACCATATTCTGGTGCGCGGCGAGTATCGCCATTCCGATTTCAGCAACAAGGACTTCGGCTCCGCCATCGG
CGATGTCGGCGCCAAGCAGGACAAGGTTCTCTTCGGGACGAGCTACAAGTTCTGA

Upstream 100 bases:

>100_bases
TTAAAAGACACTCCGCAACATCGGAGCGGGGCATGTTCTTGAGGGTCGGGCGGTGTCGCCACCGCCCTCTTTTTGCTCCC
AATGAATGCGAGGCATCTTC

Downstream 100 bases:

>100_bases
GGGGAAGACCGGCGACACTCCCGCAAGTTGCCCCTCACCCTAGCCCTCTCCCCGTAAAACGGGGAGAGGGGACGTGCCCT
GCCAGGCGTGAGCGAGGGAC

Product: porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MHIRLIACAVLALSAAVPAVAADLTYETPAPAAEQISSAYNWSGFYLGGQGGYSWSQTKILGSDENIDGGTAGLHAGYNF
QSGNIVYGIENDFNYNFKKNDDANLEWDASGRARVGYALNRTLFFATAGVAAGGGKVDIPTAGKKDGILIGWTAGGGIEH
AVTDHILVRGEYRHSDFSNKDFGSAIGDVGAKQDKVLFGTSYKF

Sequences:

>Translated_204_residues
MHIRLIACAVLALSAAVPAVAADLTYETPAPAAEQISSAYNWSGFYLGGQGGYSWSQTKILGSDENIDGGTAGLHAGYNF
QSGNIVYGIENDFNYNFKKNDDANLEWDASGRARVGYALNRTLFFATAGVAAGGGKVDIPTAGKKDGILIGWTAGGGIEH
AVTDHILVRGEYRHSDFSNKDFGSAIGDVGAKQDKVLFGTSYKF
>Mature_204_residues
MHIRLIACAVLALSAAVPAVAADLTYETPAPAAEQISSAYNWSGFYLGGQGGYSWSQTKILGSDENIDGGTAGLHAGYNF
QSGNIVYGIENDFNYNFKKNDDANLEWDASGRARVGYALNRTLFFATAGVAAGGGKVDIPTAGKKDGILIGWTAGGGIEH
AVTDHILVRGEYRHSDFSNKDFGSAIGDVGAKQDKVLFGTSYKF

Specific function: Unknown

COG id: COG3637

COG function: function code M; Opacity protein and related surface antigens

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the omp25/ropB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR000498 [H]

Pfam domain/function: PF01389 OmpA_membrane [H]

EC number: NA

Molecular weight: Translated: 21554; Mature: 21554

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIRLIACAVLALSAAVPAVAADLTYETPAPAAEQISSAYNWSGFYLGGQGGYSWSQTKI
CEEHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCEEEE
LGSDENIDGGTAGLHAGYNFQSGNIVYGIENDFNYNFKKNDDANLEWDASGRARVGYALN
ECCCCCCCCCCCCEECCCEECCCCEEEEECCCCCCCCCCCCCCCEEECCCCCEEEEEEEC
RTLFFATAGVAAGGGKVDIPTAGKKDGILIGWTAGGGIEHAVTDHILVRGEYRHSDFSNK
CEEEEEECCEECCCCEEECCCCCCCCCEEEEEECCCCCCHHCCCEEEEEECCCCCCCCCC
DFGSAIGDVGAKQDKVLFGTSYKF
CHHHHHHCCCCCCCEEEEECCCCC
>Mature Secondary Structure
MHIRLIACAVLALSAAVPAVAADLTYETPAPAAEQISSAYNWSGFYLGGQGGYSWSQTKI
CEEHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCEEEE
LGSDENIDGGTAGLHAGYNFQSGNIVYGIENDFNYNFKKNDDANLEWDASGRARVGYALN
ECCCCCCCCCCCCEECCCEECCCCEEEEECCCCCCCCCCCCCCCEEECCCCCEEEEEEEC
RTLFFATAGVAAGGGKVDIPTAGKKDGILIGWTAGGGIEHAVTDHILVRGEYRHSDFSNK
CEEEEEECCEECCCCEEECCCCCCCCCEEEEEECCCCCCHHCCCEEEEEECCCCCCCCCC
DFGSAIGDVGAKQDKVLFGTSYKF
CHHHHHHCCCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7896724 [H]