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The map label for this gene is ydhC [H]

Identifier: 209548178

GI number: 209548178

Start: 595732

End: 596382

Strand: Reverse

Name: ydhC [H]

Synonym: Rleg2_0572

Alternate gene names: 209548178

Gene position: 596382-595732 (Counterclockwise)

Preceding gene: 209548183

Following gene: 209548176

Centisome position: 13.14

GC content: 62.06

Gene sequence:

>651_bases
ATGTCCGAGAACGTCGGCCGATGGCTACGGGATGAGATTGAAAATGCAATACTTTCCTACGAGTTCGCGCCCGGCGAACG
GCTGGATGAAACCGTGCTTGCCAATCGTTTCGGCGTGTCGCGAACGCCGGTGCGCGAGGCTTTGATGCAGCTAGACGCGA
TCGGCCTGATAGAAATCCGGCCGCGCCGGGGCGCTGTCGTGATCGATCCAGGGCCGCACCGCATTTACGAGATGTTCGAG
GTGATGGCGGAGCTCGAGGGCCTTGCGGGAGCGCTCGCCGCACGCCGTCTGGACAAGACCTCCCGGGAAGCGATCACCGC
CACTCACAGTCGCTGCGAGCAGTCCGCTGGCGCCGGCGACAGCGATGCCTATTATTACGACAATGAGGAATTCCATAAGG
CCATCTACGCCGCGAGCCGAAGCGATTTCCTGCAAGAGCAATGCGTGCAATTGCATCGGCGCCTGCGCCCCTATCGCCGC
CTCCAGCTGCGGGTGCGCAATCGCCTGTCGACGTCCTTTTCGGAACATTGCGCCATCGTCGACGCGATCTTCGCCGGCGA
TGGGGACGAAGCCCGCCGCCTGTTGCGAACACATGTCGGCATTCAGGGAGAAAGGTTCAGCGATCTGGTCGCCAGCATGG
CGGCGAGATAG

Upstream 100 bases:

>100_bases
AAAGGGCTTCGTCTGTAGTATGTAGATTGTCATTCTTCGTACACGAAGTCAACTATCTTGTATACAAGAATGGAATTTAT
GTATGAAGGATACGAGAGAC

Downstream 100 bases:

>100_bases
GATCTCCTAATCCAAGAACCCATAAAGCCAGTCCCGCGTCTCCTCCGGCAGCGACACCGGCTGCTGATCCTCCTGGGCGC
GGGCCTGCCAGATGATCTCC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MSENVGRWLRDEIENAILSYEFAPGERLDETVLANRFGVSRTPVREALMQLDAIGLIEIRPRRGAVVIDPGPHRIYEMFE
VMAELEGLAGALAARRLDKTSREAITATHSRCEQSAGAGDSDAYYYDNEEFHKAIYAASRSDFLQEQCVQLHRRLRPYRR
LQLRVRNRLSTSFSEHCAIVDAIFAGDGDEARRLLRTHVGIQGERFSDLVASMAAR

Sequences:

>Translated_216_residues
MSENVGRWLRDEIENAILSYEFAPGERLDETVLANRFGVSRTPVREALMQLDAIGLIEIRPRRGAVVIDPGPHRIYEMFE
VMAELEGLAGALAARRLDKTSREAITATHSRCEQSAGAGDSDAYYYDNEEFHKAIYAASRSDFLQEQCVQLHRRLRPYRR
LQLRVRNRLSTSFSEHCAIVDAIFAGDGDEARRLLRTHVGIQGERFSDLVASMAAR
>Mature_215_residues
SENVGRWLRDEIENAILSYEFAPGERLDETVLANRFGVSRTPVREALMQLDAIGLIEIRPRRGAVVIDPGPHRIYEMFEV
MAELEGLAGALAARRLDKTSREAITATHSRCEQSAGAGDSDAYYYDNEEFHKAIYAASRSDFLQEQCVQLHRRLRPYRRL
QLRVRNRLSTSFSEHCAIVDAIFAGDGDEARRLLRTHVGIQGERFSDLVASMAAR

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082149, Length=202, Percent_Identity=29.2079207920792, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI87081914, Length=136, Percent_Identity=31.6176470588235, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24455; Mature: 24324

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSENVGRWLRDEIENAILSYEFAPGERLDETVLANRFGVSRTPVREALMQLDAIGLIEIR
CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEC
PRRGAVVIDPGPHRIYEMFEVMAELEGLAGALAARRLDKTSREAITATHSRCEQSAGAGD
CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SDAYYYDNEEFHKAIYAASRSDFLQEQCVQLHRRLRPYRRLQLRVRNRLSTSFSEHCAIV
CCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
DAIFAGDGDEARRLLRTHVGIQGERFSDLVASMAAR
HHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
SENVGRWLRDEIENAILSYEFAPGERLDETVLANRFGVSRTPVREALMQLDAIGLIEIR
CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEC
PRRGAVVIDPGPHRIYEMFEVMAELEGLAGALAARRLDKTSREAITATHSRCEQSAGAGD
CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SDAYYYDNEEFHKAIYAASRSDFLQEQCVQLHRRLRPYRRLQLRVRNRLSTSFSEHCAIV
CCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
DAIFAGDGDEARRLLRTHVGIQGERFSDLVASMAAR
HHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]