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The map label for this gene is rnhB [H]

Identifier: 209548122

GI number: 209548122

Start: 530894

End: 531583

Strand: Reverse

Name: rnhB [H]

Synonym: Rleg2_0516

Alternate gene names: 209548122

Gene position: 531583-530894 (Counterclockwise)

Preceding gene: 209548123

Following gene: 209548115

Centisome position: 11.71

GC content: 66.67

Gene sequence:

>690_bases
ATGAAACCTCGCACGCCACCCGATTCTCCCCAGCTGTTCCAAGCGGTTCCTTTGGTGCCGGATTTCCGGCTGGAGCTCAA
AGCCCGCAAGGCCGGCCACTGGCCGGTGGCCGGCGCCGACGAGGCAGGCCGCGGGCCGCTGGCCGGGCCGGTCGTCGCTG
CCGCCGTCATCCTCGATCCGAAGCGCATCCCGGAGGGGCTGAACGATTCCAAGCAGCTTTCGGCGCAACGGCGCGAGGAA
TTGTTCGTGCAAATCTTGGCGACCGCCACCGTCTCGATCGCCTCATCCAGCTCGACGCGGATCGACGAGACCGATATCCG
CAAGGCGAGCCTCGACGCCATGCGCCGCGCCATCTGCAGCCTCGCCATTCCGGCAAGCTACGTGCTGACCGACGGGCTCG
ACGTGCCGCCCGGCCTTGACTGCCCCGGACAGGCGGTGATCAAGGGCGATGCCCGCTCGGTCTCGATCGCCGCCGCCTCG
ATCGTCGCCAAGGTGACACGTGACCGAATGATGGCGCGGGCTCATCACGTATTTCCGGATTACGGCTTTGCCGCCCATGT
CGGCTACGGCACGGCGCAGCACCGCGCCGGCATCGAAAAGCTCGGCCCCTGCTCCCTGCACCGGATGAGTTTTCGGCCGC
TGCGCAAGGTCGAGGATGGTCCTCAGATGGACGAGCTGATCTCGGAATAG

Upstream 100 bases:

>100_bases
CGGATGGCCCTGACCGCCACCATCCGCCGGACCCGGTCCCCGACCGCCGCCCTGATCGGGGACTTGCGGGCAATCGGGTT
GGCGTGCGAGGTTCAGCCGC

Downstream 100 bases:

>100_bases
GTCGCCCAAATGAGGCCCTTGGCCTCCGCCTGTCGAGGGCTCCCCTCATCCGCCTGCCGGCACCTTCTCCCCGCTTGCGG
GGCGAAGGGGATACGCTGCA

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MKPRTPPDSPQLFQAVPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDSKQLSAQRREE
LFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAIPASYVLTDGLDVPPGLDCPGQAVIKGDARSVSIAAAS
IVAKVTRDRMMARAHHVFPDYGFAAHVGYGTAQHRAGIEKLGPCSLHRMSFRPLRKVEDGPQMDELISE

Sequences:

>Translated_229_residues
MKPRTPPDSPQLFQAVPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDSKQLSAQRREE
LFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAIPASYVLTDGLDVPPGLDCPGQAVIKGDARSVSIAAAS
IVAKVTRDRMMARAHHVFPDYGFAAHVGYGTAQHRAGIEKLGPCSLHRMSFRPLRKVEDGPQMDELISE
>Mature_229_residues
MKPRTPPDSPQLFQAVPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDPKRIPEGLNDSKQLSAQRREE
LFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICSLAIPASYVLTDGLDVPPGLDCPGQAVIKGDARSVSIAAAS
IVAKVTRDRMMARAHHVFPDYGFAAHVGYGTAQHRAGIEKLGPCSLHRMSFRPLRKVEDGPQMDELISE

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=182, Percent_Identity=50.5494505494505, Blast_Score=155, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 24575; Mature: 24575

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPRTPPDSPQLFQAVPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDP
CCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCH
KRIPEGLNDSKQLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICS
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
LAIPASYVLTDGLDVPPGLDCPGQAVIKGDARSVSIAAASIVAKVTRDRMMARAHHVFPD
HHCCHHHHHCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
YGFAAHVGYGTAQHRAGIEKLGPCSLHRMSFRPLRKVEDGPQMDELISE
CCCEECCCCCCHHHHCCHHHCCCCHHHHHCCCHHHHCCCCCCHHHHHCC
>Mature Secondary Structure
MKPRTPPDSPQLFQAVPLVPDFRLELKARKAGHWPVAGADEAGRGPLAGPVVAAAVILDP
CCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCH
KRIPEGLNDSKQLSAQRREELFVQILATATVSIASSSSTRIDETDIRKASLDAMRRAICS
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
LAIPASYVLTDGLDVPPGLDCPGQAVIKGDARSVSIAAASIVAKVTRDRMMARAHHVFPD
HHCCHHHHHCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
YGFAAHVGYGTAQHRAGIEKLGPCSLHRMSFRPLRKVEDGPQMDELISE
CCCEECCCCCCHHHHCCHHHCCCCHHHHHCCCHHHHCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA