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The map label for this gene is rbsC [H]

Identifier: 209548098

GI number: 209548098

Start: 505285

End: 506238

Strand: Direct

Name: rbsC [H]

Synonym: Rleg2_0492

Alternate gene names: 209548098

Gene position: 505285-506238 (Clockwise)

Preceding gene: 209548096

Following gene: 209548099

Centisome position: 11.13

GC content: 59.33

Gene sequence:

>954_bases
TTGAGCTTAGGCCCATTGTTGATCCTCATTATCCTCATCGCCGTCGTCAGTCTGATCACGCCGGCTTTTCTAAAGCCCGG
CAACCTGGGGAACATCCTGGCGCAGACGGCGGTGATTGCTCTTGTGGCGATGGGGCAGCAGCTCGTTATCCTGACACGCG
GTGTCGACCTGTCTGTCGGCTCGAATCTCGCGCTTGCAACAGTCATCGGCGGATTGGTCTACCAGCAGGTTGATGCCTCG
ATCGCCGTCATTATGGCCATGTTGCTGGCGGGTGCTGCTGTCGGGGCGGTAAACGGCGTGGTGTTTGTCTGCGGTCGGCT
GCCACATCCCTTCATTATTACCCTTGCGACCTTGAGTATCTGCCGTGGTCTGGCACTTGCATTGGCCCCTGGCCACACTA
CTATGCGCGGGATGCCCGAAGCAATTACTGCGATCGGTGGCGGTACGACGTTTGGTGTGCCCAATTCCTTCCTTGTCGTC
GGGATCTTCGGGCTTCTTTTTCTGATCCTGACGAAGGCAATGGTCTGTGGCCGATGGATCTATGCCGTCGGCGGCTCGCC
GAATGCCGCCAGAAGCATGGGTATACCGGTAAAGGGTGTCCTGCTCTCGACCTACATTATCTCAGGCTTTTGTGCCGGCG
CCGGCGCGGTGCTGCTGGCGGGACGGACCGGTGCCGCCTCGCCGATCTATGGCAATCTCTTGGAACTCGACACGATTGCG
GCGGTGATAATCGGTGGTGCCAGCTTCCTTGGCGGACGAGGCCATCTCGGCCACGCCCTGATCGGCGCCGTGCTGATCGG
CGTCATCCGCAACGCCCTTAACCTTCTCGGCGTCGATGTGTTCTTTCAAATGATCGCGATCGGTCTCGTCATCGTCATCG
CCGTTGAGGCCGATGTGCTTCGTAACCATCTCGAGGCGCGCGCGCGTGTGCTTCAATCGGCGAGAGTGCAATGA

Upstream 100 bases:

>100_bases
AGACTCTGGGATTTTGCCTCAGAATTCGTCCCGACCGGGAGGTTCGCAAGGTGCAACCTTCCACCCGAGACAATCTGGAA
TCACATTAGGACTGAAGCTT

Downstream 100 bases:

>100_bases
ACGCTGCATCCACCCCACCGGTCCTTTCGGTTCGAAATGCCCAGAAGCGCTTTGGCGCCATCCATGCCCTGAAAAATGTA
AGCTTTGATGCATATGCAGG

Product: Monosaccharide-transporting ATPase

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 316

Protein sequence:

>317_residues
MSLGPLLILIILIAVVSLITPAFLKPGNLGNILAQTAVIALVAMGQQLVILTRGVDLSVGSNLALATVIGGLVYQQVDAS
IAVIMAMLLAGAAVGAVNGVVFVCGRLPHPFIITLATLSICRGLALALAPGHTTMRGMPEAITAIGGGTTFGVPNSFLVV
GIFGLLFLILTKAMVCGRWIYAVGGSPNAARSMGIPVKGVLLSTYIISGFCAGAGAVLLAGRTGAASPIYGNLLELDTIA
AVIIGGASFLGGRGHLGHALIGAVLIGVIRNALNLLGVDVFFQMIAIGLVIVIAVEADVLRNHLEARARVLQSARVQ

Sequences:

>Translated_317_residues
MSLGPLLILIILIAVVSLITPAFLKPGNLGNILAQTAVIALVAMGQQLVILTRGVDLSVGSNLALATVIGGLVYQQVDAS
IAVIMAMLLAGAAVGAVNGVVFVCGRLPHPFIITLATLSICRGLALALAPGHTTMRGMPEAITAIGGGTTFGVPNSFLVV
GIFGLLFLILTKAMVCGRWIYAVGGSPNAARSMGIPVKGVLLSTYIISGFCAGAGAVLLAGRTGAASPIYGNLLELDTIA
AVIIGGASFLGGRGHLGHALIGAVLIGVIRNALNLLGVDVFFQMIAIGLVIVIAVEADVLRNHLEARARVLQSARVQ
>Mature_316_residues
SLGPLLILIILIAVVSLITPAFLKPGNLGNILAQTAVIALVAMGQQLVILTRGVDLSVGSNLALATVIGGLVYQQVDASI
AVIMAMLLAGAAVGAVNGVVFVCGRLPHPFIITLATLSICRGLALALAPGHTTMRGMPEAITAIGGGTTFGVPNSFLVVG
IFGLLFLILTKAMVCGRWIYAVGGSPNAARSMGIPVKGVLLSTYIISGFCAGAGAVLLAGRTGAASPIYGNLLELDTIAA
VIIGGASFLGGRGHLGHALIGAVLIGVIRNALNLLGVDVFFQMIAIGLVIVIAVEADVLRNHLEARARVLQSARVQ

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790524, Length=301, Percent_Identity=38.5382059800665, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1790191, Length=302, Percent_Identity=39.7350993377483, Blast_Score=156, Evalue=1e-39,
Organism=Escherichia coli, GI1788896, Length=308, Percent_Identity=33.7662337662338, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI145693152, Length=313, Percent_Identity=31.9488817891374, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI145693214, Length=240, Percent_Identity=32.9166666666667, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788471, Length=332, Percent_Identity=31.3253012048193, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789992, Length=122, Percent_Identity=40.1639344262295, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87082395, Length=293, Percent_Identity=30.3754266211604, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787794, Length=276, Percent_Identity=29.7101449275362, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787793, Length=295, Percent_Identity=29.1525423728814, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 32207; Mature: 32076

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLGPLLILIILIAVVSLITPAFLKPGNLGNILAQTAVIALVAMGQQLVILTRGVDLSVG
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
SNLALATVIGGLVYQQVDASIAVIMAMLLAGAAVGAVNGVVFVCGRLPHPFIITLATLSI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCHHHHHHHHHHH
CRGLALALAPGHTTMRGMPEAITAIGGGTTFGVPNSFLVVGIFGLLFLILTKAMVCGRWI
HHHHHHHCCCCCHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEE
YAVGGSPNAARSMGIPVKGVLLSTYIISGFCAGAGAVLLAGRTGAASPIYGNLLELDTIA
EEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHH
AVIIGGASFLGGRGHLGHALIGAVLIGVIRNALNLLGVDVFFQMIAIGLVIVIAVEADVL
HHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNHLEARARVLQSARVQ
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SLGPLLILIILIAVVSLITPAFLKPGNLGNILAQTAVIALVAMGQQLVILTRGVDLSVG
CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
SNLALATVIGGLVYQQVDASIAVIMAMLLAGAAVGAVNGVVFVCGRLPHPFIITLATLSI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCHHHHHHHHHHH
CRGLALALAPGHTTMRGMPEAITAIGGGTTFGVPNSFLVVGIFGLLFLILTKAMVCGRWI
HHHHHHHCCCCCHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEE
YAVGGSPNAARSMGIPVKGVLLSTYIISGFCAGAGAVLLAGRTGAASPIYGNLLELDTIA
EEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHH
AVIIGGASFLGGRGHLGHALIGAVLIGVIRNALNLLGVDVFFQMIAIGLVIVIAVEADVL
HHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNHLEARARVLQSARVQ
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]