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The map label for this gene is ygiP [C]

Identifier: 209548056

GI number: 209548056

Start: 460279

End: 461175

Strand: Reverse

Name: ygiP [C]

Synonym: Rleg2_0449

Alternate gene names: 209548056

Gene position: 461175-460279 (Counterclockwise)

Preceding gene: 209548061

Following gene: 209548054

Centisome position: 10.16

GC content: 63.55

Gene sequence:

>897_bases
ATGACCAATCTGGGCGATCTCGAAATCTTTGCCAAGGTCGTTTCGACGGGCAGCATGTCGCTTGCCGGGCGGGCACTCGG
CTTTTCCCCGGCCGTCGTCTCCAAGCGGATCAAGCGGTTGGAGGACCGGCTCGGCACCCGGCTTTTGCAGCGCACGACGC
GGCAGATCTCACTGACGGAAGCCGGACAGGGCTTCTACGACCGCGTGCTTGGCATTCTGGCCGGGCTGGAAGAGGCGGAA
TTCTATATTTCCGGCCGCTCAACGCAGATGCACGGCACGCTGAAGATCTCGGCGCCGACCTCCTTCGGGCGCATGCACAT
CGCGCCGCATCTGAAGGCCTTCATGGAGGCGCATCCGGAGCTGGCGATCAATCTGGTGCTGACCGATGAATTCAGCGACA
TCGTCGGCGGCGGTTTCGATCTGGCGATCCGCATTGCCGAACTCACCGATTCGAGCCTCGTCGCCCGGCGGCTGGCGCCG
GTGCGCCGGCTGCTCTGCGCCTCACCGGATTATCTCGCGGAACACGGCGAGCCTGGAGATATCGACGATTTGAAACATCA
TCGCTGCCTGCCGGCGCACAATGGCGACACCTGGCGGCTGAACGGGCCGGACGGAATGATCAGCCTGCGGCCTGAAGGCA
TGCTGGTCACCAACTCCAGCGAGGTAATCCGCGAGGCGGTCATCTCAGGCCTCGGGATCGCGCTGCGCTCGACCTGGGAT
ATCGGCGAGGAACTCAAGGCCGGCAAGCTGGTGCAGGTGCTGCCCGCCTATGAGGGCTCGCACAATGTGGCGCTGTCGGC
CGTCTATCCCAGCCGGCAATTCCTGCCGGCCAAGGTCAGGCTGTTCATCGACTATCTCGCCGAGCTTTACGGACCTGTCC
CCTACTGGGAGCGATGA

Upstream 100 bases:

>100_bases
GCCGCAAACCTCCTGCCGCCGATAAATCGGCTTAGCACTTTCCCGAAAGCGGCGCAAATGCTAAGTACTTATGCCAAAAG
GGGAAAAAATCGAAAACCGC

Downstream 100 bases:

>100_bases
CTGCACACCTAACTAAATGACGCGATGTCGCCTCAAAAGGCCCCTCACATATTTCAGATCATACTCCCCGCCGGTTCAGT
GCGTCAATCTCTCGATGACG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MTNLGDLEIFAKVVSTGSMSLAGRALGFSPAVVSKRIKRLEDRLGTRLLQRTTRQISLTEAGQGFYDRVLGILAGLEEAE
FYISGRSTQMHGTLKISAPTSFGRMHIAPHLKAFMEAHPELAINLVLTDEFSDIVGGGFDLAIRIAELTDSSLVARRLAP
VRRLLCASPDYLAEHGEPGDIDDLKHHRCLPAHNGDTWRLNGPDGMISLRPEGMLVTNSSEVIREAVISGLGIALRSTWD
IGEELKAGKLVQVLPAYEGSHNVALSAVYPSRQFLPAKVRLFIDYLAELYGPVPYWER

Sequences:

>Translated_298_residues
MTNLGDLEIFAKVVSTGSMSLAGRALGFSPAVVSKRIKRLEDRLGTRLLQRTTRQISLTEAGQGFYDRVLGILAGLEEAE
FYISGRSTQMHGTLKISAPTSFGRMHIAPHLKAFMEAHPELAINLVLTDEFSDIVGGGFDLAIRIAELTDSSLVARRLAP
VRRLLCASPDYLAEHGEPGDIDDLKHHRCLPAHNGDTWRLNGPDGMISLRPEGMLVTNSSEVIREAVISGLGIALRSTWD
IGEELKAGKLVQVLPAYEGSHNVALSAVYPSRQFLPAKVRLFIDYLAELYGPVPYWER
>Mature_297_residues
TNLGDLEIFAKVVSTGSMSLAGRALGFSPAVVSKRIKRLEDRLGTRLLQRTTRQISLTEAGQGFYDRVLGILAGLEEAEF
YISGRSTQMHGTLKISAPTSFGRMHIAPHLKAFMEAHPELAINLVLTDEFSDIVGGGFDLAIRIAELTDSSLVARRLAPV
RRLLCASPDYLAEHGEPGDIDDLKHHRCLPAHNGDTWRLNGPDGMISLRPEGMLVTNSSEVIREAVISGLGIALRSTWDI
GEELKAGKLVQVLPAYEGSHNVALSAVYPSRQFLPAKVRLFIDYLAELYGPVPYWER

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789440, Length=286, Percent_Identity=36.7132867132867, Blast_Score=188, Evalue=4e-49,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=38.5665529010239, Blast_Score=182, Evalue=3e-47,
Organism=Escherichia coli, GI87081978, Length=292, Percent_Identity=37.6712328767123, Blast_Score=179, Evalue=1e-46,
Organism=Escherichia coli, GI145693193, Length=293, Percent_Identity=35.1535836177474, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1789639, Length=293, Percent_Identity=31.3993174061433, Blast_Score=144, Evalue=8e-36,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=29.757785467128, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1787589, Length=294, Percent_Identity=28.2312925170068, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1790011, Length=295, Percent_Identity=25.0847457627119, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1789173, Length=249, Percent_Identity=27.710843373494, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1788706, Length=305, Percent_Identity=24.9180327868852, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786448, Length=294, Percent_Identity=25.8503401360544, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1790208, Length=144, Percent_Identity=29.8611111111111, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788481, Length=292, Percent_Identity=24.6575342465753, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1787601, Length=145, Percent_Identity=27.5862068965517, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32703; Mature: 32572

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNLGDLEIFAKVVSTGSMSLAGRALGFSPAVVSKRIKRLEDRLGTRLLQRTTRQISLTE
CCCCHHHHHHHHHHHCCCCHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHH
AGQGFYDRVLGILAGLEEAEFYISGRSTQMHGTLKISAPTSFGRMHIAPHLKAFMEAHPE
CCCCHHHHHHHHHHCCCHHEEEEECCCEEEEEEEEEECCCCCCCEEHHHHHHHHHHCCCC
LAINLVLTDEFSDIVGGGFDLAIRIAELTDSSLVARRLAPVRRLLCASPDYLAEHGEPGD
EEEEEEEECCHHHHHCCCHHHEEEEEHHCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCC
IDDLKHHRCLPAHNGDTWRLNGPDGMISLRPEGMLVTNSSEVIREAVISGLGIALRSTWD
CCHHHHCCCCCCCCCCEEEECCCCCEEEECCCCEEEECHHHHHHHHHHHHCCHHHHCCCC
IGEELKAGKLVQVLPAYEGSHNVALSAVYPSRQFLPAKVRLFIDYLAELYGPVPYWER
CHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TNLGDLEIFAKVVSTGSMSLAGRALGFSPAVVSKRIKRLEDRLGTRLLQRTTRQISLTE
CCCHHHHHHHHHHHCCCCHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHH
AGQGFYDRVLGILAGLEEAEFYISGRSTQMHGTLKISAPTSFGRMHIAPHLKAFMEAHPE
CCCCHHHHHHHHHHCCCHHEEEEECCCEEEEEEEEEECCCCCCCEEHHHHHHHHHHCCCC
LAINLVLTDEFSDIVGGGFDLAIRIAELTDSSLVARRLAPVRRLLCASPDYLAEHGEPGD
EEEEEEEECCHHHHHCCCHHHEEEEEHHCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCC
IDDLKHHRCLPAHNGDTWRLNGPDGMISLRPEGMLVTNSSEVIREAVISGLGIALRSTWD
CCHHHHCCCCCCCCCCEEEECCCCCEEEECCCCEEEECHHHHHHHHHHHHCCHHHHCCCC
IGEELKAGKLVQVLPAYEGSHNVALSAVYPSRQFLPAKVRLFIDYLAELYGPVPYWER
CHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]