Click here to switch to the map view.

The map label for this gene is fliF [H]

Identifier: 209547913

GI number: 209547913

Start: 310576

End: 312267

Strand: Direct

Name: fliF [H]

Synonym: Rleg2_0305

Alternate gene names: 209547913

Gene position: 310576-312267 (Clockwise)

Preceding gene: 209547912

Following gene: 209547914

Centisome position: 6.84

GC content: 63.0

Gene sequence:

>1692_bases
ATGAATCTGTTAAATCAATTAGTTCAGATCTTTAAGAACTTCGGTTCCCTTGGCCGAACACGCCTGATGATTCTCGGAGG
CGTCGGTGCCGTCTCCATCGCAATCGTCCTTGCGGCCGCCCTTTTCGTCAACAAGCCGGCACAGGAAACGCTCTATGTCG
GTCTGGATTCGCCCGATCTCAACCAGATCAGCATGGCGCTTGCCGAAGCCAACGTCGATTTCCAGGTCGGCACTGATGGT
ACCAGCATCAGCGTCCCCGCGGGGATGACGGGCAAGGCCCGCCTGTTGCTTGCCGAGCGCGGCCTGCCGAACAGCGCCAA
TGCCGGTTACGAACTCTTCGACAATGTCGGCTCGCTGGGCCTGACCTCCTTCATGCAGGAGGTGACGCGGGTTCGAGCGC
TGGAAGGCGAAATCGCCCGCACCATCCAGTCGATCTCGGGCATAACAGCGGCGCGCGTTCATATCGTCATGCCGGAGGTC
GGAAACTTCCGGAAGGCGGAGCAGAAGCCGACCGCCTCCGTCATGATTCGCGCCAGCGCCACCACCGGGCGCAGTGCTGC
GACCTCGATCCGCCACCTCGTCGCCTCGGCCGTGCCGGGGCTTGACGTCGATGACGTGACCATCCTCGATTCCGCCGGTC
AGCTGCTCGCTTCCGGCGACGAAGCTAGCAACAGCTCGCTGAACCGATCGCTCAATATCGTCCAGAACGTCCAGCAGGAA
GTCGAATCCAACATCGACAAGGCGTTGGCCCCCTTCCTCGGCATGGACAACTTTCGCTCCAGCGTCACCGCCGATCTCAA
CACTGACGCCCAGCAGATCCAGGAAACCACCTACGATCCCGAATCCAAGGTCGAACGCTCGGTCCGCTCGACCAAGGAAG
CCCAGCAGTCGCAGCAGAAGCAGTCCGACAGCGCGACGACGGTCGAGCAGAATATTCCGCAGGCGGCTCCCGAGGCCGGT
GGTTCGGCCGGGCCTGAATCGCAGGACAAGTCCGACAAGCGCGAAGAGCAGACCAATTACGAGATCAACAGCCGGACGAC
GGCGACGACCCGCAACAGCTACAAGGTCGAGAAGCTCTCGATCGCCGTGGTGGTCAATAAGGGCCGCATCGCCAAGATGG
TCGGCGAGCCGGCCGATCAGGCCAAGATCGACGCCTATCTTGCGGAAATGCAGAAGATCGTCGCTTCGGCGTCCGGCATC
GACGCCAAGCGCGGCGACGTCGTCACCGTCACGGCCATGGACTTCCTCGAGAACCAGCTGCTCGAAGACGCCACCGGCGG
TGTCCGCGTCATGGATATGCTGAGCCGCAACCTGGCCGGCATCATCAACTCGCTGGCCTTCGTCGCGGTCGCCTTCGTGG
TGGTCTGGATGGGCCTGCGGCCTCTGGTGCGCAGCGTCAGCGGCAACGGCAGCTCTTCGGTTCTCGGCGACGCCACGCCG
GAGGCGGCCGGCCTCGAGCTTCCGGACTTCGCGCCGGCAGCCGGCGCTTCCGGAGGAGCCCTCATGGACGGCTTCGGATC
CGACTTCGGCTTCGACAGCACCGAGGATCTGCTCAGCCTCGGCGACGACGACGGCAACTTCAACCGCCGCGTCAAGGAAG
GCCCGGAACGCAAGCTGTCCCGCATGGTCGAGATCAACGAGGAACGCGCCGCGAAAATCCTCCGGAAATGGGCGATCGAC
GAAGCAGCGTAA

Upstream 100 bases:

>100_bases
GCTGCGCGCCCTTTACGAAACGCTCGCGCAAGTTTCGCCGACTATTCGTCAGATGAGGCAATAAGCCTGCTTTGTCTTTG
ACGAATCGTGCGAGAACAGA

Downstream 100 bases:

>100_bases
GAAAAAGGCCGGGCAACCGGCCTTTTTTCATGTCGGTACACAGTGTCATTTCTGTAACGGGATAGTTGTCAGATCCTCGA
CTCGCGTAAAACGCGAATGA

Product: flagellar MS-ring protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 563; Mature: 563

Protein sequence:

>563_residues
MNLLNQLVQIFKNFGSLGRTRLMILGGVGAVSIAIVLAAALFVNKPAQETLYVGLDSPDLNQISMALAEANVDFQVGTDG
TSISVPAGMTGKARLLLAERGLPNSANAGYELFDNVGSLGLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEV
GNFRKAEQKPTASVMIRASATTGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQE
VESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQKQSDSATTVEQNIPQAAPEAG
GSAGPESQDKSDKREEQTNYEINSRTTATTRNSYKVEKLSIAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVASASGI
DAKRGDVVTVTAMDFLENQLLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVSGNGSSSVLGDATP
EAAGLELPDFAPAAGASGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKLSRMVEINEERAAKILRKWAID
EAA

Sequences:

>Translated_563_residues
MNLLNQLVQIFKNFGSLGRTRLMILGGVGAVSIAIVLAAALFVNKPAQETLYVGLDSPDLNQISMALAEANVDFQVGTDG
TSISVPAGMTGKARLLLAERGLPNSANAGYELFDNVGSLGLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEV
GNFRKAEQKPTASVMIRASATTGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQE
VESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQKQSDSATTVEQNIPQAAPEAG
GSAGPESQDKSDKREEQTNYEINSRTTATTRNSYKVEKLSIAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVASASGI
DAKRGDVVTVTAMDFLENQLLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVSGNGSSSVLGDATP
EAAGLELPDFAPAAGASGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKLSRMVEINEERAAKILRKWAID
EAA
>Mature_563_residues
MNLLNQLVQIFKNFGSLGRTRLMILGGVGAVSIAIVLAAALFVNKPAQETLYVGLDSPDLNQISMALAEANVDFQVGTDG
TSISVPAGMTGKARLLLAERGLPNSANAGYELFDNVGSLGLTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEV
GNFRKAEQKPTASVMIRASATTGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQE
VESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQKQSDSATTVEQNIPQAAPEAG
GSAGPESQDKSDKREEQTNYEINSRTTATTRNSYKVEKLSIAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVASASGI
DAKRGDVVTVTAMDFLENQLLEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVSGNGSSSVLGDATP
EAAGLELPDFAPAAGASGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKLSRMVEINEERAAKILRKWAID
EAA

Specific function: The M ring may be actively involved in energy transduction [H]

COG id: COG1766

COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliF family [H]

Homologues:

Organism=Escherichia coli, GI1788248, Length=408, Percent_Identity=29.656862745098, Blast_Score=169, Evalue=6e-43,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013556
- InterPro:   IPR000067
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]

EC number: NA

Molecular weight: Translated: 59718; Mature: 59718

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLNQLVQIFKNFGSLGRTRLMILGGVGAVSIAIVLAAALFVNKPAQETLYVGLDSPDL
CCHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCH
NQISMALAEANVDFQVGTDGTSISVPAGMTGKARLLLAERGLPNSANAGYELFDNVGSLG
HHHHHHHHHCCCCEEECCCCCEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHCHHH
LTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRASA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHCCCCCEEEEEEECC
TTGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQE
CCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHCCCCCCCHHHHHHHHHHHHHHHH
VESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQK
HHHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
QSDSATTVEQNIPQAAPEAGGSAGPESQDKSDKREEQTNYEINSRTTATTRNSYKVEKLS
HCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEECCCEEEECCCCEEEEEEE
IAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVASASGIDAKRGDVVTVTAMDFLENQL
EEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHH
LEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVSGNGSSSVLGDATP
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
EAAGLELPDFAPAAGASGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKLS
CCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHCCHHHHHH
RMVEINEERAAKILRKWAIDEAA
HHHHCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNLLNQLVQIFKNFGSLGRTRLMILGGVGAVSIAIVLAAALFVNKPAQETLYVGLDSPDL
CCHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCH
NQISMALAEANVDFQVGTDGTSISVPAGMTGKARLLLAERGLPNSANAGYELFDNVGSLG
HHHHHHHHHCCCCEEECCCCCEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHCHHH
LTSFMQEVTRVRALEGEIARTIQSISGITAARVHIVMPEVGNFRKAEQKPTASVMIRASA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHCCCCCEEEEEEECC
TTGRSAATSIRHLVASAVPGLDVDDVTILDSAGQLLASGDEASNSSLNRSLNIVQNVQQE
CCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHCCCCCCCHHHHHHHHHHHHHHHH
VESNIDKALAPFLGMDNFRSSVTADLNTDAQQIQETTYDPESKVERSVRSTKEAQQSQQK
HHHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
QSDSATTVEQNIPQAAPEAGGSAGPESQDKSDKREEQTNYEINSRTTATTRNSYKVEKLS
HCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEECCCEEEECCCCEEEEEEE
IAVVVNKGRIAKMVGEPADQAKIDAYLAEMQKIVASASGIDAKRGDVVTVTAMDFLENQL
EEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHH
LEDATGGVRVMDMLSRNLAGIINSLAFVAVAFVVVWMGLRPLVRSVSGNGSSSVLGDATP
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
EAAGLELPDFAPAAGASGGALMDGFGSDFGFDSTEDLLSLGDDDGNFNRRVKEGPERKLS
CCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHCCHHHHHH
RMVEINEERAAKILRKWAIDEAA
HHHHCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9858749; 11481430 [H]