Click here to switch to the map view.

The map label for this gene is ahyR [H]

Identifier: 209547914

GI number: 209547914

Start: 312610

End: 313356

Strand: Direct

Name: ahyR [H]

Synonym: Rleg2_0306

Alternate gene names: 209547914

Gene position: 312610-313356 (Clockwise)

Preceding gene: 209547913

Following gene: 209547915

Centisome position: 6.89

GC content: 59.71

Gene sequence:

>747_bases
ATGGATATGGATGTAATTCAGGCGAGCAAAGGCGAGAGGCAAATGTCGAATTTTGCGAGCGCTGTGGTGCCGGATTTGTT
GCCGCGCGATCAACTGCTCCAGCGCCTGCACGGTGTCGCCAACACTGGCAGGTTGCAGTCCGGTCTGCGCGCGCTGACGG
AGTATGTCGGTGCTTCGCACTACCTTCTGGCGCGCTGCGATCTCCTCCAGGAAAGCGGCCTCGATTTCATCGTCTCGTCG
GATTGGCCGTTTGACCTGGTCAGGGATATCGCCAACGATCTGGTTCGCGGCTACGCCCGTTCGACGGAGCTGGAAAAATG
CATGCAGGTCTTCCAGCCGAATTTTGCTCTTATGCCTGATAGTGCCGACGTGCCGGATGGCGCCAGCCGCCAATATTGTT
CCGTGACCTTCAATGTCGGCCGGTCGCGGCTCGCCCTGATGTTCCTGTTCGGCGAGGGGTTCATCCTGTCGCCGGAGCGC
CTGCGGGATGTCGGCCTGCTTGCAGGTTACGTCGCGAGTTTCCTGCGCTGCGGCGGGACGAGGGTCGATCGCGATTTCGA
ATTGACCGACCGCGAGCTCGAATGCCTGTTCTGGATCGCCGAGGGCAAGACCAGCGACGAGATCGCGATGATCCTCGGCA
TCTCCCGCAATACCATCAACAACTACATTACCAGCGTGATGCGCAAGACGGCGACCAAGACCCGCTCCGAGGCCATAGCC
TTCGCCGTCCGCAATAATCTCGTATAG

Upstream 100 bases:

>100_bases
TGATTCGAAATGGGATTCGAGCGGGACTCGAATTGAATCCCTTATAGAAAAATTGCTGTTGCACCGAGTTTGATCGTTTC
TCAGCCGCAGGACATTGCCA

Downstream 100 bases:

>100_bases
GGGGATCCATGGCGCATCCATCAGCCAGGACGATGAGCAGTGCCGAGCAGTCGCGCATGGTGCGTGTGAACAGGATTTCC
AGCCGGTCCGATCTTTTTCC

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MDMDVIQASKGERQMSNFASAVVPDLLPRDQLLQRLHGVANTGRLQSGLRALTEYVGASHYLLARCDLLQESGLDFIVSS
DWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALMPDSADVPDGASRQYCSVTFNVGRSRLALMFLFGEGFILSPER
LRDVGLLAGYVASFLRCGGTRVDRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIA
FAVRNNLV

Sequences:

>Translated_248_residues
MDMDVIQASKGERQMSNFASAVVPDLLPRDQLLQRLHGVANTGRLQSGLRALTEYVGASHYLLARCDLLQESGLDFIVSS
DWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALMPDSADVPDGASRQYCSVTFNVGRSRLALMFLFGEGFILSPER
LRDVGLLAGYVASFLRCGGTRVDRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIA
FAVRNNLV
>Mature_248_residues
MDMDVIQASKGERQMSNFASAVVPDLLPRDQLLQRLHGVANTGRLQSGLRALTEYVGASHYLLARCDLLQESGLDFIVSS
DWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALMPDSADVPDGASRQYCSVTFNVGRSRLALMFLFGEGFILSPER
LRDVGLLAGYVASFLRCGGTRVDRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIA
FAVRNNLV

Specific function: Functions as a BHL-responsive transcriptional regulator [H]

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 27678; Mature: 27678

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMDVIQASKGERQMSNFASAVVPDLLPRDQLLQRLHGVANTGRLQSGLRALTEYVGASH
CCCCHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH
YLLARCDLLQESGLDFIVSSDWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALMPD
HHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCC
SADVPDGASRQYCSVTFNVGRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGT
CCCCCCCCCCCEEEEEEECCHHHHEEHEEECCCEEECHHHHHHHHHHHHHHHHHHHCCCC
RVDRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIA
CCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
FAVRNNLV
HHHHHCCC
>Mature Secondary Structure
MDMDVIQASKGERQMSNFASAVVPDLLPRDQLLQRLHGVANTGRLQSGLRALTEYVGASH
CCCCHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH
YLLARCDLLQESGLDFIVSSDWPFDLVRDIANDLVRGYARSTELEKCMQVFQPNFALMPD
HHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCC
SADVPDGASRQYCSVTFNVGRSRLALMFLFGEGFILSPERLRDVGLLAGYVASFLRCGGT
CCCCCCCCCCCEEEEEEECCHHHHEEHEEECCCEEECHHHHHHHHHHHHHHHHHHHCCCC
RVDRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIA
CCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
FAVRNNLV
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9286976 [H]