| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
Click here to switch to the map view.
The map label for this gene is csxA [H]
Identifier: 209547751
GI number: 209547751
Start: 134362
End: 136818
Strand: Reverse
Name: csxA [H]
Synonym: Rleg2_0140
Alternate gene names: 209547751
Gene position: 136818-134362 (Counterclockwise)
Preceding gene: 209547752
Following gene: 209547749
Centisome position: 3.01
GC content: 63.29
Gene sequence:
>2457_bases ATGATCGAAAAGACCGAGCTCAATTCCGGCTGGACGCTTCACTGCAACGATACAGGAAGGCCTGGCCTGCCGGAAACAAT CCCGGCGACGGTGCCGGGCTGCGTGCATCTCGATCTTCTCGCCAACCGGCTGATCCCCGATCCCTATATCGACGTCAACG AGATCACCAATGACTGGATCGGCAAGACCGACTGGACCTATCGCTGCACATTCGAGGCCGCGCCTGACGACGACACGGTG CAGGAACTCGTCTTCGACGGGCTCGATACGATCGCGGTGATCGCGCTGAACGGCGAGGAGATCGGCCGCAGCTTCAACAT GCACCGTACCTATCGCTTCGATATTTCCGGGCTTCTGAAGGTGGGGGCCAACGACCTCGCGGTCAGCTTCCGCTCCGCCT ATGCCTATGGCGCCGAGATGGAGAAGCACTACGGCTACCGGCCTAACAACTATCCGGGGCCGGGCAATCTGATGCGCAAG ATGGCCTGCAATTTCGGCTGGGACTGGGGTCCGACGCTGGTGACGGCGGGACTCTGGAAGAGGGTCAGGCTGGAAAGCTG GGATCAGGCGCGGCTTGCCGAAACACGGGTCTCGGCCACGCTTGCCGGCGGCGACGGGCTGGTGAAGGTGCATGCGAGGC TGGCGCGCCATGGGGACGCGAAGCCGTGCCGGCTGGTCGCGACGATCGGCGGTGTGACGACGACGGTTGCGATCGGCGCC GGAGAAGACACCATCGCCTTCGAGCTTCGCCTGCCCTCGCCAAAACTCTGGTGGCCGCATCATCTCGGCGCCCAGCCGCT CTATCCCCTGACGCTCGAACTGATCGACGATGCCGGCGGCGACCTGCTCGACAGCTATCAGCGGGCGCTTGGTTTCCGCT CGTTGAGGCTTGACACCTCGGCCGATGCGCACGGCTCGGCCTTCACCTTCGTCATCAACGACGTGCCGCTGTTCATCGCC GGCGCGAACTGGATTCCCGACGATTGTTTCCCTTCGCGGGTGACGGCGGGGCGCTACGCCGCACGGATCGACGAGGCGAA GGCCGCCAATATCCACATGCTGCGCGTCTGGGGCGGCGGCATCTTCGAGCGCGACGAATTCTACGAGGCCTGCGACCGCA TGGGCATGCTGGTCTGGCAGGATTTCCTCTTTGCCTGCGCCGCCTATCCGGAGGAGGAGCCGCTGAAGAGCGAGGTCGAG GCCGAAGTGCGCGATAATGTCGTGCGGCTGATGCCGCATGCCAGCCTGATCCTCTGGAACGGCAACAATGAGAATATCTG GGGCTTCGACGAATGGGGCTGGCGGCCGGTCATCAAGGCCGATGAAAGCTGGGGGCTCGGTTATTATCTCGACCTGCTGC CGAGGCTCTCAGCCGAGCTCGATCCCGACCGGCCTTATTATCCCGGCAGCCCCTATTCCGGTTCGATGGAGATCGCGCCG AATGCCGATGCGCATGGCTGCAAACATATCTGGGACGTCTGGAACGATGTCGGCTACGAGGTCTACCGCGACTATGTCCC GCGCTTCTGCTCCGAATTCGGCTGGCAGGCGCCGGCCGCCTGGGCGACGATCGAAGAAAGCGTGCACGACCAGCCGCTGA CGCCGCAATCGAACGGCGTCTTCCACCATCAGAAGGCCACCCAAGGCAATGACAAGCTGATCCGCGGCCTCTCCGGCCAC CTGCCGGAACCGCAAACGATGGACGACTGGCACTTCGCCACCCAGCTCAACCAGGCCCGCGCCATCCGCTTCGGCATCGA GCACATGCGCTCGCACCGCGATATCTGCAAGGGCGCGGTGGTCTGGCAGTTCAACGATTGTTGGCCGGTGACCTCCTGGG CCGCACTCGACTCGGCCGGGCGCCGCAAGCCGCTCTGGTATGCGCTGAGGGCCGCCTATGATCCGCGCCTGCTGACCATT CAGCCGCGCGGCGACGGGCTTTCGGCGGTGGCGGTTAATGAGAGAACGCTGTTCTGGCGGGCGAAGATCAGCGGCAGGCG TTTGCGGCTCGACGGCAGCGTGCTGGCAGAGTTCGAATTCTGGCGGCTGCTCTGCGACCGCTTCGAGGCAAAAGAGTTTC CGCTGCCCGAAGATATCGTCAGTCCTGGCTTACCGAAAGAGGAGGTCGTTGTCGTCGAAATGCTCGACAGGCGGGCCTTT CATTATTTCGTCGAGGATATCGAGCTTGCCCTGCCGGCGCCGCGGCTGAGCGTCGATGTTGCTGCGAGCGATGGCGGGTT TGCGGTTACGGTGACGGCTGAGAGTTTCCTCAAGGATCTCTGCCTGATGGCGGATCGGCTGGATCCGGACGCCGTGGTCG ATACGATGCTGGTGACGCTGCTGCCGGGCGAGAGTCATGTGTTTGCGGTGAAGACGGCGAAGGGGATTTCGGCCAATGAC ATTGTCGTCGGTACAGTGCTGCGGTCGGCCAATGATCTTGTCGCAGGGCGGCAATAA
Upstream 100 bases:
>100_bases CGACGGCAAACTCTTCGGCCTGTTCTTCTTCGTCAGCGATCCCGACGGCTACAAGATCGAAGTGCTGCAGCGCCACGGCC GGTTTCTCTAGGAATATTTG
Downstream 100 bases:
>100_bases AGGCGGCCGCAACGTCGCGACTCCCTCTTCTCCCCTCGGGGAGAAGGTGCCCGTAGGGCGGATGAGGGGCCGAGGACGCC GGTCTTTCGAAGATAAGCAC
Product: glycoside hydrolase family 2 sugar binding
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 818; Mature: 818
Protein sequence:
>818_residues MIEKTELNSGWTLHCNDTGRPGLPETIPATVPGCVHLDLLANRLIPDPYIDVNEITNDWIGKTDWTYRCTFEAAPDDDTV QELVFDGLDTIAVIALNGEEIGRSFNMHRTYRFDISGLLKVGANDLAVSFRSAYAYGAEMEKHYGYRPNNYPGPGNLMRK MACNFGWDWGPTLVTAGLWKRVRLESWDQARLAETRVSATLAGGDGLVKVHARLARHGDAKPCRLVATIGGVTTTVAIGA GEDTIAFELRLPSPKLWWPHHLGAQPLYPLTLELIDDAGGDLLDSYQRALGFRSLRLDTSADAHGSAFTFVINDVPLFIA GANWIPDDCFPSRVTAGRYAARIDEAKAANIHMLRVWGGGIFERDEFYEACDRMGMLVWQDFLFACAAYPEEEPLKSEVE AEVRDNVVRLMPHASLILWNGNNENIWGFDEWGWRPVIKADESWGLGYYLDLLPRLSAELDPDRPYYPGSPYSGSMEIAP NADAHGCKHIWDVWNDVGYEVYRDYVPRFCSEFGWQAPAAWATIEESVHDQPLTPQSNGVFHHQKATQGNDKLIRGLSGH LPEPQTMDDWHFATQLNQARAIRFGIEHMRSHRDICKGAVVWQFNDCWPVTSWAALDSAGRRKPLWYALRAAYDPRLLTI QPRGDGLSAVAVNERTLFWRAKISGRRLRLDGSVLAEFEFWRLLCDRFEAKEFPLPEDIVSPGLPKEEVVVVEMLDRRAF HYFVEDIELALPAPRLSVDVAASDGGFAVTVTAESFLKDLCLMADRLDPDAVVDTMLVTLLPGESHVFAVKTAKGISAND IVVGTVLRSANDLVAGRQ
Sequences:
>Translated_818_residues MIEKTELNSGWTLHCNDTGRPGLPETIPATVPGCVHLDLLANRLIPDPYIDVNEITNDWIGKTDWTYRCTFEAAPDDDTV QELVFDGLDTIAVIALNGEEIGRSFNMHRTYRFDISGLLKVGANDLAVSFRSAYAYGAEMEKHYGYRPNNYPGPGNLMRK MACNFGWDWGPTLVTAGLWKRVRLESWDQARLAETRVSATLAGGDGLVKVHARLARHGDAKPCRLVATIGGVTTTVAIGA GEDTIAFELRLPSPKLWWPHHLGAQPLYPLTLELIDDAGGDLLDSYQRALGFRSLRLDTSADAHGSAFTFVINDVPLFIA GANWIPDDCFPSRVTAGRYAARIDEAKAANIHMLRVWGGGIFERDEFYEACDRMGMLVWQDFLFACAAYPEEEPLKSEVE AEVRDNVVRLMPHASLILWNGNNENIWGFDEWGWRPVIKADESWGLGYYLDLLPRLSAELDPDRPYYPGSPYSGSMEIAP NADAHGCKHIWDVWNDVGYEVYRDYVPRFCSEFGWQAPAAWATIEESVHDQPLTPQSNGVFHHQKATQGNDKLIRGLSGH LPEPQTMDDWHFATQLNQARAIRFGIEHMRSHRDICKGAVVWQFNDCWPVTSWAALDSAGRRKPLWYALRAAYDPRLLTI QPRGDGLSAVAVNERTLFWRAKISGRRLRLDGSVLAEFEFWRLLCDRFEAKEFPLPEDIVSPGLPKEEVVVVEMLDRRAF HYFVEDIELALPAPRLSVDVAASDGGFAVTVTAESFLKDLCLMADRLDPDAVVDTMLVTLLPGESHVFAVKTAKGISAND IVVGTVLRSANDLVAGRQ >Mature_818_residues MIEKTELNSGWTLHCNDTGRPGLPETIPATVPGCVHLDLLANRLIPDPYIDVNEITNDWIGKTDWTYRCTFEAAPDDDTV QELVFDGLDTIAVIALNGEEIGRSFNMHRTYRFDISGLLKVGANDLAVSFRSAYAYGAEMEKHYGYRPNNYPGPGNLMRK MACNFGWDWGPTLVTAGLWKRVRLESWDQARLAETRVSATLAGGDGLVKVHARLARHGDAKPCRLVATIGGVTTTVAIGA GEDTIAFELRLPSPKLWWPHHLGAQPLYPLTLELIDDAGGDLLDSYQRALGFRSLRLDTSADAHGSAFTFVINDVPLFIA GANWIPDDCFPSRVTAGRYAARIDEAKAANIHMLRVWGGGIFERDEFYEACDRMGMLVWQDFLFACAAYPEEEPLKSEVE AEVRDNVVRLMPHASLILWNGNNENIWGFDEWGWRPVIKADESWGLGYYLDLLPRLSAELDPDRPYYPGSPYSGSMEIAP NADAHGCKHIWDVWNDVGYEVYRDYVPRFCSEFGWQAPAAWATIEESVHDQPLTPQSNGVFHHQKATQGNDKLIRGLSGH LPEPQTMDDWHFATQLNQARAIRFGIEHMRSHRDICKGAVVWQFNDCWPVTSWAALDSAGRRKPLWYALRAAYDPRLLTI QPRGDGLSAVAVNERTLFWRAKISGRRLRLDGSVLAEFEFWRLLCDRFEAKEFPLPEDIVSPGLPKEEVVVVEMLDRRAF HYFVEDIELALPAPRLSVDVAASDGGFAVTVTAESFLKDLCLMADRLDPDAVVDTMLVTLLPGESHVFAVKTAKGISAND IVVGTVLRSANDLVAGRQ
Specific function: Hydrolyzes chitosan and chitooligosaccharides with retention of anomeric configuration. Has no beta-mannosidase activity [H]
COG id: COG3250
COG function: function code G; Beta-galactosidase/beta-glucuronidase
Gene ontology:
Cell location: Secreted, extracellular space [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 2 family [H]
Homologues:
Organism=Homo sapiens, GI84798622, Length=682, Percent_Identity=31.0850439882698, Blast_Score=317, Evalue=3e-86, Organism=Caenorhabditis elegans, GI17550784, Length=679, Percent_Identity=26.8041237113402, Blast_Score=242, Evalue=5e-64, Organism=Drosophila melanogaster, GI24643838, Length=608, Percent_Identity=31.4144736842105, Blast_Score=243, Evalue=4e-64, Organism=Drosophila melanogaster, GI24643840, Length=584, Percent_Identity=30.8219178082192, Blast_Score=221, Evalue=2e-57,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008979 - InterPro: IPR013812 - InterPro: IPR006104 - InterPro: IPR006102 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF00703 Glyco_hydro_2; PF02837 Glyco_hydro_2_N [H]
EC number: =3.2.1.165 [H]
Molecular weight: Translated: 91448; Mature: 91448
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIEKTELNSGWTLHCNDTGRPGLPETIPATVPGCVHLDLLANRLIPDPYIDVNEITNDWI CCCCEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEHHHHHHHCCCCCCCCHHHHCCCCC GKTDWTYRCTFEAAPDDDTVQELVFDGLDTIAVIALNGEEIGRSFNMHRTYRFDISGLLK CCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEEEECHHHHCCCCCCCEEEEECHHHHHH VGANDLAVSFRSAYAYGAEMEKHYGYRPNNYPGPGNLMRKMACNFGWDWGPTLVTAGLWK CCCCHHEEHHHHHHHHCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHH RVRLESWDQARLAETRVSATLAGGDGLVKVHARLARHGDAKPCRLVATIGGVTTTVAIGA HHHCCCCCHHHHHHHHHEEEEECCCCEEHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEC GEDTIAFELRLPSPKLWWPHHLGAQPLYPLTLELIDDAGGDLLDSYQRALGFRSLRLDTS CCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEHHCCCCHHHHHHHHHHCCEEEEECCC ADAHGSAFTFVINDVPLFIAGANWIPDDCFPSRVTAGRYAARIDEAKAANIHMLRVWGGG CCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEEEECCC IFERDEFYEACDRMGMLVWQDFLFACAAYPEEEPLKSEVEAEVRDNVVRLMPHASLILWN CCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCEEECCCCEEEEEE GNNENIWGFDEWGWRPVIKADESWGLGYYLDLLPRLSAELDPDRPYYPGSPYSGSMEIAP CCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECC NADAHGCKHIWDVWNDVGYEVYRDYVPRFCSEFGWQAPAAWATIEESVHDQPLTPQSNGV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCE FHHQKATQGNDKLIRGLSGHLPEPQTMDDWHFATQLNQARAIRFGIEHMRSHRDICKGAV EEECCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE VWQFNDCWPVTSWAALDSAGRRKPLWYALRAAYDPRLLTIQPRGDGLSAVAVNERTLFWR EEEECCCCCCCHHHHHCCCCCCCCHHHEEHHCCCCEEEEEEECCCCEEEEEECCEEEEEE AKISGRRLRLDGSVLAEFEFWRLLCDRFEAKEFPLPEDIVSPGLPKEEVVVVEMLDRRAF EECCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHEEHHHHHHHHHH HYFVEDIELALPAPRLSVDVAASDGGFAVTVTAESFLKDLCLMADRLDPDAVVDTMLVTL HHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHE LPGESHVFAVKTAKGISANDIVVGTVLRSANDLVAGRQ ECCCCEEEEEEECCCCCCCCEEEEHHHHCCCCHHCCCC >Mature Secondary Structure MIEKTELNSGWTLHCNDTGRPGLPETIPATVPGCVHLDLLANRLIPDPYIDVNEITNDWI CCCCEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEHHHHHHHCCCCCCCCHHHHCCCCC GKTDWTYRCTFEAAPDDDTVQELVFDGLDTIAVIALNGEEIGRSFNMHRTYRFDISGLLK CCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEEEECHHHHCCCCCCCEEEEECHHHHHH VGANDLAVSFRSAYAYGAEMEKHYGYRPNNYPGPGNLMRKMACNFGWDWGPTLVTAGLWK CCCCHHEEHHHHHHHHCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHH RVRLESWDQARLAETRVSATLAGGDGLVKVHARLARHGDAKPCRLVATIGGVTTTVAIGA HHHCCCCCHHHHHHHHHEEEEECCCCEEHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEC GEDTIAFELRLPSPKLWWPHHLGAQPLYPLTLELIDDAGGDLLDSYQRALGFRSLRLDTS CCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEHHCCCCHHHHHHHHHHCCEEEEECCC ADAHGSAFTFVINDVPLFIAGANWIPDDCFPSRVTAGRYAARIDEAKAANIHMLRVWGGG CCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEEEECCC IFERDEFYEACDRMGMLVWQDFLFACAAYPEEEPLKSEVEAEVRDNVVRLMPHASLILWN CCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCEEECCCCEEEEEE GNNENIWGFDEWGWRPVIKADESWGLGYYLDLLPRLSAELDPDRPYYPGSPYSGSMEIAP CCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECC NADAHGCKHIWDVWNDVGYEVYRDYVPRFCSEFGWQAPAAWATIEESVHDQPLTPQSNGV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCE FHHQKATQGNDKLIRGLSGHLPEPQTMDDWHFATQLNQARAIRFGIEHMRSHRDICKGAV EEECCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE VWQFNDCWPVTSWAALDSAGRRKPLWYALRAAYDPRLLTIQPRGDGLSAVAVNERTLFWR EEEECCCCCCCHHHHHCCCCCCCCHHHEEHHCCCCEEEEEEECCCCEEEEEECCEEEEEE AKISGRRLRLDGSVLAEFEFWRLLCDRFEAKEFPLPEDIVSPGLPKEEVVVVEMLDRRAF EECCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHEEHHHHHHHHHH HYFVEDIELALPAPRLSVDVAASDGGFAVTVTAESFLKDLCLMADRLDPDAVVDTMLVTL HHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHE LPGESHVFAVKTAKGISANDIVVGTVLRSANDLVAGRQ ECCCCEEEEEEECCCCCCCCEEEEHHHHCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11572948; 12692562 [H]