| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
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The map label for this gene is rbsA [H]
Identifier: 209547738
GI number: 209547738
Start: 119650
End: 120447
Strand: Direct
Name: rbsA [H]
Synonym: Rleg2_0127
Alternate gene names: 209547738
Gene position: 119650-120447 (Clockwise)
Preceding gene: 209547737
Following gene: 209547739
Centisome position: 2.64
GC content: 64.91
Gene sequence:
>798_bases ATGGCTCGCGAACCCCTTCTCACCGCCCCCCTTCTCACTGCCCGGGGTCTCGTCAAGCGCTACGGCCGCGTGACCGCGCT CGACAATGCCGATTTCGACCTCTACCCCGGCGAAATCCTCGCCGTCATCGGCGATAACGGCGCCGGCAAGTCCTCGCTGA TCAAGGCGATTTCAGGCGCCGTCACTCCGGACGAGGGGGTGATCACCCTCGAAGGCAAGCAGGTGCAGTTCCGCTCGCCG ATGGAAGCGCGCGAGGCCGGCATCGAAACCGTCTATCAGAACCTGGCTCTGTCGCCGGCGCTGTCGATCGCCGACAACAT GTTCCTCGGCCGCGAGATCCGCAAACCGGGCATGCTCGGCTCGATGTTCCGCATGCTCGACCGGCCGGCCATGGAAAAGC TGGCGCGCAACAAGCTCTCCGAACTCGGCCTGATGACCATTCAGAACATCAACCAGGCGGTGGAGACCCTTTCCGGCGGT CAGCGTCAGGGTGTCGCGGTCGCCCGCGCCGCAGCCTTCGGCTCCAAGGTCATCATCATGGACGAACCGACGGCCGCTCT CGGCGTCAAGGAAAGCCGCCGCGTGCTGGAACTGATCCTCGATGTCAGAGCCCGCGGCCTGCCGATCGTGCTGATCTCGC ACAACATGCCGCATGTTTTCGAGGTGGCCGACCGGATCCATATCCACCGCCTCGGCCGCCGCCTGACGGTGATCGATCCG AAGGAATACACCATGTCCGACGCCGTCGCCTTCATGACCGGCGCCAAGGCAGTGCCGACGGAGCCCGTTGCGGCATGA
Upstream 100 bases:
>100_bases TGCTCGGCGCCGACCCGCAATGGAAAGTGCTTTTGACCGGCGTGCTGATCATTGCCGCCGTCGCCATCGACCAGTGGATC AGAAAGGTTTCGGTGTAATC
Downstream 100 bases:
>100_bases CGGTCAGCACCGAGGAAATCGCCGGCGAGGTCATCAACCGCGCCGGTGATTCCAGACGCTTTCTCATCGGCATTGCCGGC CCGCCGGGTTCCGGCAAGTC
Product: ABC transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 265; Mature: 264
Protein sequence:
>265_residues MAREPLLTAPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGKQVQFRSP MEAREAGIETVYQNLALSPALSIADNMFLGREIRKPGMLGSMFRMLDRPAMEKLARNKLSELGLMTIQNINQAVETLSGG QRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDP KEYTMSDAVAFMTGAKAVPTEPVAA
Sequences:
>Translated_265_residues MAREPLLTAPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGKQVQFRSP MEAREAGIETVYQNLALSPALSIADNMFLGREIRKPGMLGSMFRMLDRPAMEKLARNKLSELGLMTIQNINQAVETLSGG QRQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDP KEYTMSDAVAFMTGAKAVPTEPVAA >Mature_264_residues AREPLLTAPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGAVTPDEGVITLEGKQVQFRSPM EAREAGIETVYQNLALSPALSIADNMFLGREIRKPGMLGSMFRMLDRPAMEKLARNKLSELGLMTIQNINQAVETLSGGQ RQGVAVARAAAFGSKVIIMDEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDPK EYTMSDAVAFMTGAKAVPTEPVAA
Specific function: Part of the ABC transporter complex RbsABCD involved in ribose import. Responsible for energy coupling to the transport system [H]
COG id: COG1129
COG function: function code G; ABC-type sugar transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI21536376, Length=236, Percent_Identity=30.9322033898305, Blast_Score=92, Evalue=5e-19, Organism=Homo sapiens, GI105990541, Length=234, Percent_Identity=27.3504273504274, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI150417984, Length=235, Percent_Identity=28.936170212766, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI153792144, Length=215, Percent_Identity=28.3720930232558, Blast_Score=81, Evalue=8e-16, Organism=Homo sapiens, GI45446740, Length=236, Percent_Identity=27.1186440677966, Blast_Score=81, Evalue=9e-16, Organism=Homo sapiens, GI47078218, Length=236, Percent_Identity=27.1186440677966, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI27881501, Length=212, Percent_Identity=26.4150943396226, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI30795238, Length=212, Percent_Identity=26.4150943396226, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI27262624, Length=208, Percent_Identity=29.3269230769231, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI27262626, Length=208, Percent_Identity=29.3269230769231, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI31657092, Length=227, Percent_Identity=23.3480176211454, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI27477115, Length=196, Percent_Identity=29.0816326530612, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI27436953, Length=223, Percent_Identity=26.457399103139, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI116734710, Length=203, Percent_Identity=26.6009852216749, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI42741659, Length=196, Percent_Identity=27.5510204081633, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI66529005, Length=200, Percent_Identity=24, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI156105685, Length=195, Percent_Identity=28.7179487179487, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI48995001, Length=244, Percent_Identity=37.2950819672131, Blast_Score=164, Evalue=6e-42, Organism=Escherichia coli, GI1790190, Length=252, Percent_Identity=36.1111111111111, Blast_Score=154, Evalue=4e-39, Organism=Escherichia coli, GI1788472, Length=246, Percent_Identity=36.1788617886179, Blast_Score=145, Evalue=2e-36, Organism=Escherichia coli, GI1788210, Length=242, Percent_Identity=32.2314049586777, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI1787792, Length=246, Percent_Identity=33.3333333333333, Blast_Score=128, Evalue=4e-31, Organism=Escherichia coli, GI1788897, Length=251, Percent_Identity=34.2629482071713, Blast_Score=124, Evalue=4e-30, Organism=Escherichia coli, GI1789991, Length=258, Percent_Identity=31.0077519379845, Blast_Score=124, Evalue=6e-30, Organism=Escherichia coli, GI1790525, Length=248, Percent_Identity=31.0483870967742, Blast_Score=124, Evalue=8e-30, Organism=Escherichia coli, GI1789864, Length=243, Percent_Identity=27.5720164609054, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI87081791, Length=236, Percent_Identity=32.2033898305085, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI87081709, Length=240, Percent_Identity=27.5, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1789962, Length=245, Percent_Identity=31.0204081632653, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1787712, Length=235, Percent_Identity=30.2127659574468, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI145693107, Length=242, Percent_Identity=31.8181818181818, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1787029, Length=219, Percent_Identity=30.1369863013699, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1790544, Length=218, Percent_Identity=31.1926605504587, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1787500, Length=213, Percent_Identity=30.9859154929577, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1786803, Length=247, Percent_Identity=27.9352226720648, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1786398, Length=207, Percent_Identity=32.3671497584541, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1788225, Length=231, Percent_Identity=30.7359307359307, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1787370, Length=235, Percent_Identity=28.5106382978723, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1790162, Length=234, Percent_Identity=29.9145299145299, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1789672, Length=218, Percent_Identity=26.605504587156, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI48994997, Length=233, Percent_Identity=27.8969957081545, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1786872, Length=220, Percent_Identity=30.9090909090909, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1787758, Length=237, Percent_Identity=27.8481012658228, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1788761, Length=212, Percent_Identity=28.3018867924528, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1790467, Length=246, Percent_Identity=26.8292682926829, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1786563, Length=207, Percent_Identity=30.9178743961353, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1788165, Length=207, Percent_Identity=30.4347826086957, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI87081834, Length=219, Percent_Identity=26.9406392694064, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1789032, Length=236, Percent_Identity=28.3898305084746, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1790534, Length=224, Percent_Identity=29.0178571428571, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1787089, Length=245, Percent_Identity=28.1632653061224, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1786698, Length=223, Percent_Identity=26.457399103139, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI87082267, Length=208, Percent_Identity=29.8076923076923, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1787105, Length=224, Percent_Identity=27.6785714285714, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1789593, Length=244, Percent_Identity=28.6885245901639, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI48994943, Length=233, Percent_Identity=27.4678111587983, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1787759, Length=247, Percent_Identity=30.3643724696356, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1786345, Length=220, Percent_Identity=27.7272727272727, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1788450, Length=210, Percent_Identity=30, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786253, Length=191, Percent_Identity=28.7958115183246, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI48994883, Length=227, Percent_Identity=26.431718061674, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787164, Length=227, Percent_Identity=26.8722466960352, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI87082268, Length=210, Percent_Identity=24.2857142857143, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI87081782, Length=233, Percent_Identity=25.3218884120172, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1790739, Length=235, Percent_Identity=24.6808510638298, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI1786319, Length=206, Percent_Identity=27.1844660194175, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1787143, Length=211, Percent_Identity=29.3838862559242, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1788506, Length=247, Percent_Identity=26.7206477732794, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787547, Length=208, Percent_Identity=24.5192307692308, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1789963, Length=219, Percent_Identity=25.5707762557078, Blast_Score=64, Evalue=8e-12, Organism=Escherichia coli, GI1786703, Length=186, Percent_Identity=27.4193548387097, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1789891, Length=261, Percent_Identity=27.5862068965517, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1789873, Length=205, Percent_Identity=28.2926829268293, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1786981, Length=197, Percent_Identity=29.4416243654822, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1788053, Length=214, Percent_Identity=27.5700934579439, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1787112, Length=192, Percent_Identity=27.6041666666667, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI115534520, Length=224, Percent_Identity=29.4642857142857, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI115533608, Length=203, Percent_Identity=28.0788177339901, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17565586, Length=250, Percent_Identity=24.4, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI71984940, Length=207, Percent_Identity=26.0869565217391, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17541710, Length=244, Percent_Identity=29.0983606557377, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24666092, Length=214, Percent_Identity=28.0373831775701, Blast_Score=87, Evalue=9e-18, Organism=Drosophila melanogaster, GI24643674, Length=228, Percent_Identity=23.6842105263158, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI221512771, Length=219, Percent_Identity=25.5707762557078, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24659289, Length=216, Percent_Identity=27.3148148148148, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI17136592, Length=238, Percent_Identity=28.1512605042017, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI28574150, Length=233, Percent_Identity=26.6094420600858, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI116007328, Length=233, Percent_Identity=26.6094420600858, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI17136662, Length=228, Percent_Identity=26.7543859649123, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI28574533, Length=198, Percent_Identity=28.7878787878788, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI28571209, Length=262, Percent_Identity=24.8091603053435, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI24648314, Length=224, Percent_Identity=25.4464285714286, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR015861 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: =3.6.3.17 [H]
Molecular weight: Translated: 28636; Mature: 28505
Theoretical pI: Translated: 9.72; Mature: 9.72
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAREPLLTAPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGA CCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCC VTPDEGVITLEGKQVQFRSPMEAREAGIETVYQNLALSPALSIADNMFLGREIRKPGMLG CCCCCCEEEEECCEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHH SMFRMLDRPAMEKLARNKLSELGLMTIQNINQAVETLSGGQRQGVAVARAAAFGSKVIIM HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEE DEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDP ECCCHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCEEEEECC KEYTMSDAVAFMTGAKAVPTEPVAA CHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure AREPLLTAPLLTARGLVKRYGRVTALDNADFDLYPGEILAVIGDNGAGKSSLIKAISGA CCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCC VTPDEGVITLEGKQVQFRSPMEAREAGIETVYQNLALSPALSIADNMFLGREIRKPGMLG CCCCCCEEEEECCEEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHH SMFRMLDRPAMEKLARNKLSELGLMTIQNINQAVETLSGGQRQGVAVARAAAFGSKVIIM HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEE DEPTAALGVKESRRVLELILDVRARGLPIVLISHNMPHVFEVADRIHIHRLGRRLTVIDP ECCCHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCEEEEECC KEYTMSDAVAFMTGAKAVPTEPVAA CHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11997336 [H]