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The map label for this gene is fucU [H]

Identifier: 209547734

GI number: 209547734

Start: 115473

End: 115949

Strand: Reverse

Name: fucU [H]

Synonym: Rleg2_0123

Alternate gene names: 209547734

Gene position: 115949-115473 (Counterclockwise)

Preceding gene: 209547735

Following gene: 209547727

Centisome position: 2.56

GC content: 63.73

Gene sequence:

>477_bases
ATGCTGAAAGGACTTGATCCGCTGTTGAGCCCGGAGCTGCTTTTTACGCTTCGGGCCATGGGCCACGGCGACGAGATCGC
CATCGTCGACGGCAATTATCCGGGCGTCGAACATGCGCGCCGGCTGATCCGGCTCGACGGCCACCACCTCGTGCCGGTGC
TCAACGCCGTGCTCAGCGTGATGCCGATCGACGATTTCGTTCCCGAGGCGATCTTCCGCTCGACCGTCAAGGCCGAGCGC
GACAAACTCGACCCGGTGCATGAGGAGATGATCGACTGCTGCGCCCGCCACGAGCCGCACCGGCAGGTGGTGCCGCTGCT
CGGCCCGGATTTCTACGGCCGGGTAAAGGCCGCCCATGCGGTGATCCAGACAAGCGAACCCAGGCTCTATGCCAACATCA
TCCTGCGCAAGGGCGTGATCTATCCGAAGGAACCGGGCACACAGTCGGCGGCCGGGGTAGATCCGTTCGTTTACTAG

Upstream 100 bases:

>100_bases
GGCGCAGTCGGCGCCCAGGCGCGCGCCATCGGCGGCGCCAGCCTGCCGATCTTTGCGCGTTACCTCACCGACCAGAACGT
ACTCTTCAAGGAGGTAGACC

Downstream 100 bases:

>100_bases
CGATCGTCTGGTCGTCATCTCGTCTGTGTGGCGATCAGGTCCACCATCTTTCGGGCCGAGCCCAATGCCAGGGTCCAGCC
GAGCATTCCGTGGCCGGTGT

Product: RbsD or FucU transport

Products: NA

Alternate protein names: Fucose 1-epimerase; Type-2 mutarotase [H]

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MLKGLDPLLSPELLFTLRAMGHGDEIAIVDGNYPGVEHARRLIRLDGHHLVPVLNAVLSVMPIDDFVPEAIFRSTVKAER
DKLDPVHEEMIDCCARHEPHRQVVPLLGPDFYGRVKAAHAVIQTSEPRLYANIILRKGVIYPKEPGTQSAAGVDPFVY

Sequences:

>Translated_158_residues
MLKGLDPLLSPELLFTLRAMGHGDEIAIVDGNYPGVEHARRLIRLDGHHLVPVLNAVLSVMPIDDFVPEAIFRSTVKAER
DKLDPVHEEMIDCCARHEPHRQVVPLLGPDFYGRVKAAHAVIQTSEPRLYANIILRKGVIYPKEPGTQSAAGVDPFVY
>Mature_158_residues
MLKGLDPLLSPELLFTLRAMGHGDEIAIVDGNYPGVEHARRLIRLDGHHLVPVLNAVLSVMPIDDFVPEAIFRSTVKAER
DKLDPVHEEMIDCCARHEPHRQVVPLLGPDFYGRVKAAHAVIQTSEPRLYANIILRKGVIYPKEPGTQSAAGVDPFVY

Specific function: Involved in the anomeric conversion of L-fucose [H]

COG id: COG4154

COG function: function code G; Fucose dissimilation pathway protein FucU

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. FucU mutarotase subfamily [H]

Homologues:

Organism=Homo sapiens, GI148596947, Length=145, Percent_Identity=40.6896551724138, Blast_Score=91, Evalue=6e-19,
Organism=Homo sapiens, GI148596951, Length=129, Percent_Identity=37.984496124031, Blast_Score=70, Evalue=9e-13,
Organism=Escherichia coli, GI1789169, Length=140, Percent_Identity=35.7142857142857, Blast_Score=84, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007721 [H]

Pfam domain/function: PF05025 RbsD_FucU [H]

EC number: NA

Molecular weight: Translated: 17562; Mature: 17562

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKGLDPLLSPELLFTLRAMGHGDEIAIVDGNYPGVEHARRLIRLDGHHLVPVLNAVLSV
CCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
MPIDDFVPEAIFRSTVKAERDKLDPVHEEMIDCCARHEPHRQVVPLLGPDFYGRVKAAHA
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
VIQTSEPRLYANIILRKGVIYPKEPGTQSAAGVDPFVY
HHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLKGLDPLLSPELLFTLRAMGHGDEIAIVDGNYPGVEHARRLIRLDGHHLVPVLNAVLSV
CCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
MPIDDFVPEAIFRSTVKAERDKLDPVHEEMIDCCARHEPHRQVVPLLGPDFYGRVKAAHA
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
VIQTSEPRLYANIILRKGVIYPKEPGTQSAAGVDPFVY
HHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA