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The map label for this gene is xylR [H]

Identifier: 209547735

GI number: 209547735

Start: 115933

End: 117180

Strand: Reverse

Name: xylR [H]

Synonym: Rleg2_0124

Alternate gene names: 209547735

Gene position: 117180-115933 (Counterclockwise)

Preceding gene: 209547743

Following gene: 209547734

Centisome position: 2.58

GC content: 65.71

Gene sequence:

>1248_bases
ATGTCGTCTTTGGATGGACCGGAACACACGCCGGTCCCGCCGCCAATTCTAAATCCGGCCGGCGGTGCGAACCAGGTCAG
GGTCCGGGCCTATAACGAACGGCTCGTGCTGTCGCTGGTGCGTCTCTACGGTGCGCTGTCGAAGGCCGATATCGCGCGCC
GCAGCGGCCTATCGGCGCAGACCGTCTCGGTGATCATGCGGGTGCTTGAGAAGGAAGGGCTGCTGTCGCGCGGGGCGCCG
GTGCGCGGCCGTGTGGGACAGCCGTCGATCCCGATGCATCTCAATGCCGATGCCGTCTATTCCTTCGGCCTGAAGATGGG
CCGGCGCAGCGCCGATTTGGTGCTGATGGATTTCGTCGGCCGCATCCGCATGCAGCTGCACCGCACCTATGCCTACCCGC
TGCCGGAAGAAATCCTCGCCTTCGTCACTTCGGGCATCCAGGAGCTCGAAGACCGGCTCGACGACAAGCAGCGCGGCCGC
ATTGCCGGGCTCGGCATCGCCGCCCCCTTCGAGCTCTGGAACTGGGCCGAAGAGGTGGGCGCGCCGCCTGGAGCCATGGA
GGTCTGGCGCGATGTCGACCTGCAGGCCGACATCGCCGCCCGCGTCTCCCATCCGGTCTTCATGCAAAACGATGCGACCA
GCGCCTGTGGCGCCGAACTGGTCTTCGGCGTCGGACCGTCCTATCCGGATTTCGTCTATTTCTTCATCGGCTCCTTCATC
GGCGGCGGCATCGTGCTCAATTCGGCGATCTTTTCCGGCCGCACCGGCACGGCCGGCGCCATCGGGCCGCTGCCGGTGCG
GGGGAAAAACGGCGACACGATGCAGCTGCTCGAAATCGCCTCGATCTTCGTGCTGGAAAACATGCTGCGCGAGCGCGGCA
TCGATCCCGAGCCGCTCTGGTATTCGGCCGACGACTGGGTGGATTTCGGCGAGCCGATGGAGACCTGGATCCAGGACAGC
GCCAAGGCGCTGGCGCAGGCGATCGTCGCCGCCGCCTCGATCGTCGATTTCAGCGCCGCCGTCATCGACGGCGGTTTTCC
CCAGTGGGTGCGCAGCCGCGTGGTGCAGGCCACCATCGACGAAGCCGCCAAACTCGACCTGCAGGGCGTCGTCATGCCCG
AAATCATCGAGGGCGCAGTCGGCGCCCAGGCGCGCGCCATCGGCGGCGCCAGCCTGCCGATCTTTGCGCGTTACCTCACC
GACCAGAACGTACTCTTCAAGGAGGTAGACCATGCTGAAAGGACTTGA

Upstream 100 bases:

>100_bases
AGAAATCGGCTTGTCAATAAATAAATCCAATTGAATTATTAATTCGATGTGGCATGCTCGATCGAATTAGGGCATAGGCC
AACAATCGGGAGGAGCGGCC

Downstream 100 bases:

>100_bases
TCCGCTGTTGAGCCCGGAGCTGCTTTTTACGCTTCGGGCCATGGGCCACGGCGACGAGATCGCCATCGTCGACGGCAATT
ATCCGGGCGTCGAACATGCG

Product: ROK family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 414

Protein sequence:

>415_residues
MSSLDGPEHTPVPPPILNPAGGANQVRVRAYNERLVLSLVRLYGALSKADIARRSGLSAQTVSVIMRVLEKEGLLSRGAP
VRGRVGQPSIPMHLNADAVYSFGLKMGRRSADLVLMDFVGRIRMQLHRTYAYPLPEEILAFVTSGIQELEDRLDDKQRGR
IAGLGIAAPFELWNWAEEVGAPPGAMEVWRDVDLQADIAARVSHPVFMQNDATSACGAELVFGVGPSYPDFVYFFIGSFI
GGGIVLNSAIFSGRTGTAGAIGPLPVRGKNGDTMQLLEIASIFVLENMLRERGIDPEPLWYSADDWVDFGEPMETWIQDS
AKALAQAIVAAASIVDFSAAVIDGGFPQWVRSRVVQATIDEAAKLDLQGVVMPEIIEGAVGAQARAIGGASLPIFARYLT
DQNVLFKEVDHAERT

Sequences:

>Translated_415_residues
MSSLDGPEHTPVPPPILNPAGGANQVRVRAYNERLVLSLVRLYGALSKADIARRSGLSAQTVSVIMRVLEKEGLLSRGAP
VRGRVGQPSIPMHLNADAVYSFGLKMGRRSADLVLMDFVGRIRMQLHRTYAYPLPEEILAFVTSGIQELEDRLDDKQRGR
IAGLGIAAPFELWNWAEEVGAPPGAMEVWRDVDLQADIAARVSHPVFMQNDATSACGAELVFGVGPSYPDFVYFFIGSFI
GGGIVLNSAIFSGRTGTAGAIGPLPVRGKNGDTMQLLEIASIFVLENMLRERGIDPEPLWYSADDWVDFGEPMETWIQDS
AKALAQAIVAAASIVDFSAAVIDGGFPQWVRSRVVQATIDEAAKLDLQGVVMPEIIEGAVGAQARAIGGASLPIFARYLT
DQNVLFKEVDHAERT
>Mature_414_residues
SSLDGPEHTPVPPPILNPAGGANQVRVRAYNERLVLSLVRLYGALSKADIARRSGLSAQTVSVIMRVLEKEGLLSRGAPV
RGRVGQPSIPMHLNADAVYSFGLKMGRRSADLVLMDFVGRIRMQLHRTYAYPLPEEILAFVTSGIQELEDRLDDKQRGRI
AGLGIAAPFELWNWAEEVGAPPGAMEVWRDVDLQADIAARVSHPVFMQNDATSACGAELVFGVGPSYPDFVYFFIGSFIG
GGIVLNSAIFSGRTGTAGAIGPLPVRGKNGDTMQLLEIASIFVLENMLRERGIDPEPLWYSADDWVDFGEPMETWIQDSA
KALAQAIVAAASIVDFSAAVIDGGFPQWVRSRVVQATIDEAAKLDLQGVVMPEIIEGAVGAQARAIGGASLPIFARYLTD
QNVLFKEVDHAERT

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1786891, Length=403, Percent_Identity=25.3101736972705, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 44871; Mature: 44740

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLDGPEHTPVPPPILNPAGGANQVRVRAYNERLVLSLVRLYGALSKADIARRSGLSAQ
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
TVSVIMRVLEKEGLLSRGAPVRGRVGQPSIPMHLNADAVYSFGLKMGRRSADLVLMDFVG
HHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCEEECHHHHHHHHHHHCCCCCCCHHHHHHH
RIRMQLHRTYAYPLPEEILAFVTSGIQELEDRLDDKQRGRIAGLGIAAPFELWNWAEEVG
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHCCCEEEECCCCHHHHHHHHHHHC
APPGAMEVWRDVDLQADIAARVSHPVFMQNDATSACGAELVFGVGPSYPDFVYFFIGSFI
CCCCHHHHHHCCCCCHHHHHHCCCCEEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHHH
GGGIVLNSAIFSGRTGTAGAIGPLPVRGKNGDTMQLLEIASIFVLENMLRERGIDPEPLW
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCE
YSADDWVDFGEPMETWIQDSAKALAQAIVAAASIVDFSAAVIDGGFPQWVRSRVVQATID
ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
EAAKLDLQGVVMPEIIEGAVGAQARAIGGASLPIFARYLTDQNVLFKEVDHAERT
HHHHCCCCCCCHHHHHHHHCCCHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
SSLDGPEHTPVPPPILNPAGGANQVRVRAYNERLVLSLVRLYGALSKADIARRSGLSAQ
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
TVSVIMRVLEKEGLLSRGAPVRGRVGQPSIPMHLNADAVYSFGLKMGRRSADLVLMDFVG
HHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCEEECHHHHHHHHHHHCCCCCCCHHHHHHH
RIRMQLHRTYAYPLPEEILAFVTSGIQELEDRLDDKQRGRIAGLGIAAPFELWNWAEEVG
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHCCCEEEECCCCHHHHHHHHHHHC
APPGAMEVWRDVDLQADIAARVSHPVFMQNDATSACGAELVFGVGPSYPDFVYFFIGSFI
CCCCHHHHHHCCCCCHHHHHHCCCCEEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHHH
GGGIVLNSAIFSGRTGTAGAIGPLPVRGKNGDTMQLLEIASIFVLENMLRERGIDPEPLW
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCE
YSADDWVDFGEPMETWIQDSAKALAQAIVAAASIVDFSAAVIDGGFPQWVRSRVVQATID
ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
EAAKLDLQGVVMPEIIEGAVGAQARAIGGASLPIFARYLTDQNVLFKEVDHAERT
HHHHCCCCCCCHHHHHHHHCCCHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2544559 [H]