Click here to switch to the map view.

The map label for this gene is yqeI [H]

Identifier: 209399424

GI number: 209399424

Start: 1281769

End: 1282581

Strand: Reverse

Name: yqeI [H]

Synonym: ECH74115_1270

Alternate gene names: 209399424

Gene position: 1282581-1281769 (Counterclockwise)

Preceding gene: 209395800

Following gene: 209400320

Centisome position: 23.02

GC content: 33.7

Gene sequence:

>813_bases
ATGATCTACATTATAAATGATGAAGTAAGATTCAACTCATCATCTAATAAGTTAACATCACTCCTTACATCAGAGGAAGT
GATACTCACTTATCCTGCGGGAAAATGCTTAAAGTTACTTTTAGATAACGCTTATAGTGTCGTGTCACACAATCAATTCT
TTGAAAAAGTCTGGAGCGATAGCAGTGCCGATGTCGCAACCAACACTTTATATCAAAATATATCGATGATAAGACGTTCT
TTTCGTGAAATCAGCTCAGCGACGATATTTAATGATGTTATCAGAACGGTGCCCCGTAAAGGCTTCAAAATCAATGAAGA
AATCAGCATAACTGTTCTCGACAATAATCACAATGAGAATGAAAGTGTTGAGAGTGAAGAGAATGGTACCCACACTGAAA
ATATAAATAAAAATCACATTGCAAAAGGTATATTTACCACAAAGAATACATTACTTATAGTTTGTTTTTTTGCGGCATGG
GGGATAGTGTATATATCTTCTTATTTTTTCGATATGGCTTTTCAAAGCAAATCCCACACTATAAAAAAAATAGATGCTTT
CTCAAATTATGCTCAACACCCTACTCAGGAAGGATGCAGTTATTTCTATGATAATAAATACTTTAATTCCGTAGACATGT
TATCACCGATTATTGAAAAATTGCAGAAGATGGAAATTAACTGCAAAATACATCCTTACATTTACATTGCAACAAATGAT
AGCATGAGCGGATTTTATGCTTTCACCTGTAGTCAGATGTTAAACTCTGAATCACCAAATAATTGCAACTCTCTCTATTA
TAAAGCGGAGTAA

Upstream 100 bases:

>100_bases
TTGCATTTTTAGGAAATTATACTATAGTGCACTTAATGTTCTTGCCTTTATTTTCTGAGTAATACTGGATTTGTAATACA
CAACTAAGGTATAAAATGTA

Downstream 100 bases:

>100_bases
TCATATGACTCAAAGATATTTTCTGTTTGCGGGAATAATTTTATGTGCTTTTATTGCAGCAATTCTGAGCCATATTGCGT
TTCATCATGCCAATGAACCA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MIYIINDEVRFNSSSNKLTSLLTSEEVILTYPAGKCLKLLLDNAYSVVSHNQFFEKVWSDSSADVATNTLYQNISMIRRS
FREISSATIFNDVIRTVPRKGFKINEEISITVLDNNHNENESVESEENGTHTENINKNHIAKGIFTTKNTLLIVCFFAAW
GIVYISSYFFDMAFQSKSHTIKKIDAFSNYAQHPTQEGCSYFYDNKYFNSVDMLSPIIEKLQKMEINCKIHPYIYIATND
SMSGFYAFTCSQMLNSESPNNCNSLYYKAE

Sequences:

>Translated_270_residues
MIYIINDEVRFNSSSNKLTSLLTSEEVILTYPAGKCLKLLLDNAYSVVSHNQFFEKVWSDSSADVATNTLYQNISMIRRS
FREISSATIFNDVIRTVPRKGFKINEEISITVLDNNHNENESVESEENGTHTENINKNHIAKGIFTTKNTLLIVCFFAAW
GIVYISSYFFDMAFQSKSHTIKKIDAFSNYAQHPTQEGCSYFYDNKYFNSVDMLSPIIEKLQKMEINCKIHPYIYIATND
SMSGFYAFTCSQMLNSESPNNCNSLYYKAE
>Mature_270_residues
MIYIINDEVRFNSSSNKLTSLLTSEEVILTYPAGKCLKLLLDNAYSVVSHNQFFEKVWSDSSADVATNTLYQNISMIRRS
FREISSATIFNDVIRTVPRKGFKINEEISITVLDNNHNENESVESEENGTHTENINKNHIAKGIFTTKNTLLIVCFFAAW
GIVYISSYFFDMAFQSKSHTIKKIDAFSNYAQHPTQEGCSYFYDNKYFNSVDMLSPIIEKLQKMEINCKIHPYIYIATND
SMSGFYAFTCSQMLNSESPNNCNSLYYKAE

Specific function: Unknown

COG id: COG3710

COG function: function code K; DNA-binding winged-HTH domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To V.cholerae cholera toxin transcriptional activator (toxR) [H]

Homologues:

Organism=Escherichia coli, GI1789213, Length=276, Percent_Identity=31.8840579710145, Blast_Score=123, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 30958; Mature: 30958

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYIINDEVRFNSSSNKLTSLLTSEEVILTYPAGKCLKLLLDNAYSVVSHNQFFEKVWSD
CEEEEECCEEECCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCC
SSADVATNTLYQNISMIRRSFREISSATIFNDVIRTVPRKGFKINEEISITVLDNNHNEN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCEEEEEEEECCCCCC
ESVESEENGTHTENINKNHIAKGIFTTKNTLLIVCFFAAWGIVYISSYFFDMAFQSKSHT
CCCCCCCCCCCCCCCCHHHHHHCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
IKKIDAFSNYAQHPTQEGCSYFYDNKYFNSVDMLSPIIEKLQKMEINCKIHPYIYIATND
HHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEECC
SMSGFYAFTCSQMLNSESPNNCNSLYYKAE
CCCCHHHHHHHHHHCCCCCCCCCCEEEECC
>Mature Secondary Structure
MIYIINDEVRFNSSSNKLTSLLTSEEVILTYPAGKCLKLLLDNAYSVVSHNQFFEKVWSD
CEEEEECCEEECCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCC
SSADVATNTLYQNISMIRRSFREISSATIFNDVIRTVPRKGFKINEEISITVLDNNHNEN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCEEEEEEEECCCCCC
ESVESEENGTHTENINKNHIAKGIFTTKNTLLIVCFFAAWGIVYISSYFFDMAFQSKSHT
CCCCCCCCCCCCCCCCHHHHHHCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
IKKIDAFSNYAQHPTQEGCSYFYDNKYFNSVDMLSPIIEKLQKMEINCKIHPYIYIATND
HHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEECC
SMSGFYAFTCSQMLNSESPNNCNSLYYKAE
CCCCHHHHHHHHHHCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]