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The map label for this gene is yccZ

Identifier: 209398304

GI number: 209398304

Start: 1228828

End: 1229967

Strand: Reverse

Name: yccZ

Synonym: ECH74115_1219

Alternate gene names: 209398304

Gene position: 1229967-1228828 (Counterclockwise)

Preceding gene: 209395798

Following gene: 209400259

Centisome position: 22.07

GC content: 50.88

Gene sequence:

>1140_bases
ATGAAAAAGAACATTTTTAAGTTTTCGGTACTGACATTGGCTGTTCTGTCTTTGACAGCATGTACCCTTGTTCCTGGTCA
GAATTTATCGACCAGTAACAAGGATGTCATTGAACTACCTGACAATCAGTATGACCTGGACAAAATGGTCAATATCTATC
CCGTCACGCCAGGATTGATTGATCAGTTGCGCGCCAAACCGATTATGTCGCAGGCTAACCCGGAGCTGGAGCAGCAAATC
GCGAACTATGAATATCGTATCGGCATTGGTGATGTGTTGATGGTTACGGTCTGGGATCACCCGGAACTAACCACCCCCGC
AGGGCAATACCGTAGCGCCAGTGATACCGGCAACTGGGTTAACGCCGATGGTGCGATTTTCTACCCCTATATTGGTCGCC
TGAAAGTGGCCGGGAAAACACTTACCCAGGTACGCAACGAGATTACAGCGCGTCTGGATTCAGTCATTGAAAGCCCGCAA
GTCGATGTCAGCGTCGCGGCGTTCCGCTCGCAAAAAGCGTACGTCACCGGTGAAGTCAGCAAATCGGGTCAGCAGCCGAT
TACCAATATTCCTCTGACCATCATGGATGCGATTAACGCCGCGGGCGGTCTGACCGCAGATGCAGACTGGCGCAATGTGG
TGCTCACCCAGAATGGCGTAAAGACCAAAGTGAACCTCTATGCGCTGATGCAGCGTGGCGACTTGCGCCAGAACAAACTG
CTGCACCCGGGAGATATTTTATTTATTCCGCGCAACGATGATCTGAAAGTCTTCGTGATGGGTGAAGTGGGTAAACAGAG
CACGCTGAAAATGGACCGCAGCGGTATGACCCTGGCGGAAGCGCTGGGTAACGCTGAGGGTATGAATCAGGATGTCGCTG
ATGCGACGGGGATTTTTGTTATTCGTGCAACGCAAAACAAGCAGAATGGCAAAATCGCCAATATTTATCAGCTGAATGCG
AAGGACGCATCGGCAATGATACTCGGAACGGAATTCCAGCTTGAACCTTACGACATTGTTTATGTCACTACCGCGCCTCT
GGCTCGTTGGAACCGTGTGATTTCCCTGCTGGTACCGACGATTTCCGGGGTGCATGACCTGACAGAGACTTCACGGTGGA
TTCAAACATGGCCCAACTAA

Upstream 100 bases:

>100_bases
CAAATACCAGCTCTATCCAATGACGGCAGAGCGAGAAGTACCGGTTGGACAATAACCTGACGTAATTCATAACATTACAT
TGACTGATAAATATAAACCA

Downstream 100 bases:

>100_bases
AATTTAACTCAATCCTGGTGGTTTGTACCGGCAACATTTGCCGTTCGCCCATTGGCGAGCGCTTGCTGCGTAAACGTCTG
CCGGGCGTAAAAGTCAAATC

Product: outer membrane lipoprotein, group 4 capsule (G4C) polysaccharide

Products: NA

Alternate protein names: Group 4 capsule protein E homolog

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MKKNIFKFSVLTLAVLSLTACTLVPGQNLSTSNKDVIELPDNQYDLDKMVNIYPVTPGLIDQLRAKPIMSQANPELEQQI
ANYEYRIGIGDVLMVTVWDHPELTTPAGQYRSASDTGNWVNADGAIFYPYIGRLKVAGKTLTQVRNEITARLDSVIESPQ
VDVSVAAFRSQKAYVTGEVSKSGQQPITNIPLTIMDAINAAGGLTADADWRNVVLTQNGVKTKVNLYALMQRGDLRQNKL
LHPGDILFIPRNDDLKVFVMGEVGKQSTLKMDRSGMTLAEALGNAEGMNQDVADATGIFVIRATQNKQNGKIANIYQLNA
KDASAMILGTEFQLEPYDIVYVTTAPLARWNRVISLLVPTISGVHDLTETSRWIQTWPN

Sequences:

>Translated_379_residues
MKKNIFKFSVLTLAVLSLTACTLVPGQNLSTSNKDVIELPDNQYDLDKMVNIYPVTPGLIDQLRAKPIMSQANPELEQQI
ANYEYRIGIGDVLMVTVWDHPELTTPAGQYRSASDTGNWVNADGAIFYPYIGRLKVAGKTLTQVRNEITARLDSVIESPQ
VDVSVAAFRSQKAYVTGEVSKSGQQPITNIPLTIMDAINAAGGLTADADWRNVVLTQNGVKTKVNLYALMQRGDLRQNKL
LHPGDILFIPRNDDLKVFVMGEVGKQSTLKMDRSGMTLAEALGNAEGMNQDVADATGIFVIRATQNKQNGKIANIYQLNA
KDASAMILGTEFQLEPYDIVYVTTAPLARWNRVISLLVPTISGVHDLTETSRWIQTWPN
>Mature_379_residues
MKKNIFKFSVLTLAVLSLTACTLVPGQNLSTSNKDVIELPDNQYDLDKMVNIYPVTPGLIDQLRAKPIMSQANPELEQQI
ANYEYRIGIGDVLMVTVWDHPELTTPAGQYRSASDTGNWVNADGAIFYPYIGRLKVAGKTLTQVRNEITARLDSVIESPQ
VDVSVAAFRSQKAYVTGEVSKSGQQPITNIPLTIMDAINAAGGLTADADWRNVVLTQNGVKTKVNLYALMQRGDLRQNKL
LHPGDILFIPRNDDLKVFVMGEVGKQSTLKMDRSGMTLAEALGNAEGMNQDVADATGIFVIRATQNKQNGKIANIYQLNA
KDASAMILGTEFQLEPYDIVYVTTAPLARWNRVISLLVPTISGVHDLTETSRWIQTWPN

Specific function: May be involved in polysaccharide transport

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BexD/CtrA/VexA family

Homologues:

Organism=Escherichia coli, GI1787218, Length=379, Percent_Identity=100, Blast_Score=776, Evalue=0.0,
Organism=Escherichia coli, GI1788376, Length=379, Percent_Identity=64.1160949868074, Blast_Score=518, Evalue=1e-148,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GFCE_ECO57 (P0A933)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   C90771
- PIR:   G85633
- RefSeq:   NP_286920.1
- RefSeq:   NP_309166.1
- ProteinModelPortal:   P0A933
- SMR:   P0A933
- EnsemblBacteria:   EBESCT00000025763
- EnsemblBacteria:   EBESCT00000057436
- GeneID:   915179
- GeneID:   959047
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z1400
- KEGG:   ecs:ECs1139
- GeneTree:   EBGT00050000009572
- HOGENOM:   HBG505123
- OMA:   EMRANDI
- ProtClustDB:   PRK15078
- BioCyc:   ECOL83334:ECS1139-MONOMER
- InterPro:   IPR003715
- InterPro:   IPR019554

Pfam domain/function: PF02563 Poly_export; PF10531 SLBB

EC number: NA

Molecular weight: Translated: 41741; Mature: 41741

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNIFKFSVLTLAVLSLTACTLVPGQNLSTSNKDVIELPDNQYDLDKMVNIYPVTPGLI
CCCCEEHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEECCCCCCCCCCCEEEEECCCHHH
DQLRAKPIMSQANPELEQQIANYEYRIGIGDVLMVTVWDHPELTTPAGQYRSASDTGNWV
HHHHCCCCHHHCCHHHHHHHHCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCEE
NADGAIFYPYIGRLKVAGKTLTQVRNEITARLDSVIESPQVDVSVAAFRSQKAYVTGEVS
CCCCCEEECCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEECC
KSGQQPITNIPLTIMDAINAAGGLTADADWRNVVLTQNGVKTKVNLYALMQRGDLRQNKL
CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCC
LHPGDILFIPRNDDLKVFVMGEVGKQSTLKMDRSGMTLAEALGNAEGMNQDVADATGIFV
CCCCCEEEEECCCCEEEEEEECCCCCCCEEECCCCCHHHHHHCCCCCCCCCCCCCCEEEE
IRATQNKQNGKIANIYQLNAKDASAMILGTEFQLEPYDIVYVTTAPLARWNRVISLLVPT
EEECCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCEEEEEEECCCHHHHHHHHHHHHHH
ISGVHDLTETSRWIQTWPN
HCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKKNIFKFSVLTLAVLSLTACTLVPGQNLSTSNKDVIELPDNQYDLDKMVNIYPVTPGLI
CCCCEEHHHHHHHHHHHHHHHEECCCCCCCCCCCCEEECCCCCCCCCCCEEEEECCCHHH
DQLRAKPIMSQANPELEQQIANYEYRIGIGDVLMVTVWDHPELTTPAGQYRSASDTGNWV
HHHHCCCCHHHCCHHHHHHHHCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCEE
NADGAIFYPYIGRLKVAGKTLTQVRNEITARLDSVIESPQVDVSVAAFRSQKAYVTGEVS
CCCCCEEECCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEECC
KSGQQPITNIPLTIMDAINAAGGLTADADWRNVVLTQNGVKTKVNLYALMQRGDLRQNKL
CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCC
LHPGDILFIPRNDDLKVFVMGEVGKQSTLKMDRSGMTLAEALGNAEGMNQDVADATGIFV
CCCCCEEEEECCCCEEEEEEECCCCCCCEEECCCCCHHHHHHCCCCCCCCCCCCCCEEEE
IRATQNKQNGKIANIYQLNAKDASAMILGTEFQLEPYDIVYVTTAPLARWNRVISLLVPT
EEECCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCEEEEEEECCCHHHHHHHHHHHHHH
ISGVHDLTETSRWIQTWPN
HCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796