Click here to switch to the map view.

The map label for this gene is nrfD [H]

Identifier: 209398055

GI number: 209398055

Start: 5218826

End: 5219782

Strand: Direct

Name: nrfD [H]

Synonym: ECH74115_5578

Alternate gene names: 209398055

Gene position: 5218826-5219782 (Clockwise)

Preceding gene: 209396255

Following gene: 209397457

Centisome position: 93.66

GC content: 57.26

Gene sequence:

>957_bases
ATGACGCAGACTTCCGCATTTCATTTTGAATCGCTGGTGTGGGACTGGCCGATTGCCATCTACCTGTTTTTGATTGGTAT
TTCTGCCGGTCTGGTGACGCTGGCCGTGCTGTTACGTCGCTTCTACCCGCAGGCGGGCGGTGCAGACAGCACGTTGCTGC
GCACCACGCTGATTGTCGGACCTGGCGCGGTGATCCTCGGTCTGTTGAGCCTCGTCTTCCACCTGACAAGACCGTGGACC
TTCTGGAAGCTGATGTTCCACTACAGTTTTACTTCGGTGATGTCGATGGGGGTGATGCTGTTTCAGCTTTACATGGTGGT
GCTGGTGCTGTGGCTGGCGAAAATCTTTGAACATGATTTGCTTGCCCTGCAACAACGCTGGTTGCCGAAGCTGGGGATCG
TGCAAAAGGTTCTGAGCCTGCTGACGCCCGTTCATCGCGGACTGGAAACATTGATGCTGGTGCTGGCGGTGTTGTTGGGG
GCTTATACCGGTTTTCTGCTGTCGGCGCTGAAATCGTATCCGTTCCTTAATAACCCGATCCTGCCGGTGCTGTTCCTCTT
CTCCGGCATCTCGTCCGGTGCGGCGGTGGCACTGATCGCCATGGCGATACGCCAACGCAGTAACCCGCATTCCACGGAAG
CGCAGTTTGTACACCGTATGGAAATCCCCGTGGTATGGGGTGAAATCTTCCTGCTGGCGGCGTTTTTTGTCGGTCTGGCG
CTGGGCGATGACGGTAAAGTGCGTGCGCTGGTGGCGGCATTGGGCGGCGGTTTCTGGACGTGGTGGTTCTGGCTTGGTGT
CGCCGGGCTGGGGCTGATTGTGCCAATGTTGTTCAAACCGTGGGTCAATCGCAGTTCCGGCATTCCTGCCGTGCTGGCGG
CGTGTGGGGCCAGTCTGGTCGGCGTGTTGATGTTGCGATTTTTCATTCTCTACGCCGGGCAGTTAACGGTGGCGTAA

Upstream 100 bases:

>100_bases
CGCAACTGCTGCGCCAGAAGCCCACTTACCGCTACAAGCTGGCGCTGGGAACCAAACCGAAGCTGTACCGCGTACCGTTT
AAATACGGGGAGGTGAGCCA

Downstream 100 bases:

>100_bases
GCCAGAACAGAGGTGGTTTCTGGACGTATTCCTTCCTGAAGTCGGTTTTCTGGCGCTGTTGTTAAGTCTCGGGGTCAACG
TGTTGACCCCGTTGACGGCC

Product: nrfD protein

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MTQTSAFHFESLVWDWPIAIYLFLIGISAGLVTLAVLLRRFYPQAGGADSTLLRTTLIVGPGAVILGLLSLVFHLTRPWT
FWKLMFHYSFTSVMSMGVMLFQLYMVVLVLWLAKIFEHDLLALQQRWLPKLGIVQKVLSLLTPVHRGLETLMLVLAVLLG
AYTGFLLSALKSYPFLNNPILPVLFLFSGISSGAAVALIAMAIRQRSNPHSTEAQFVHRMEIPVVWGEIFLLAAFFVGLA
LGDDGKVRALVAALGGGFWTWWFWLGVAGLGLIVPMLFKPWVNRSSGIPAVLAACGASLVGVLMLRFFILYAGQLTVA

Sequences:

>Translated_318_residues
MTQTSAFHFESLVWDWPIAIYLFLIGISAGLVTLAVLLRRFYPQAGGADSTLLRTTLIVGPGAVILGLLSLVFHLTRPWT
FWKLMFHYSFTSVMSMGVMLFQLYMVVLVLWLAKIFEHDLLALQQRWLPKLGIVQKVLSLLTPVHRGLETLMLVLAVLLG
AYTGFLLSALKSYPFLNNPILPVLFLFSGISSGAAVALIAMAIRQRSNPHSTEAQFVHRMEIPVVWGEIFLLAAFFVGLA
LGDDGKVRALVAALGGGFWTWWFWLGVAGLGLIVPMLFKPWVNRSSGIPAVLAACGASLVGVLMLRFFILYAGQLTVA
>Mature_317_residues
TQTSAFHFESLVWDWPIAIYLFLIGISAGLVTLAVLLRRFYPQAGGADSTLLRTTLIVGPGAVILGLLSLVFHLTRPWTF
WKLMFHYSFTSVMSMGVMLFQLYMVVLVLWLAKIFEHDLLALQQRWLPKLGIVQKVLSLLTPVHRGLETLMLVLAVLLGA
YTGFLLSALKSYPFLNNPILPVLFLFSGISSGAAVALIAMAIRQRSNPHSTEAQFVHRMEIPVVWGEIFLLAAFFVGLAL
GDDGKVRALVAALGGGFWTWWFWLGVAGLGLIVPMLFKPWVNRSSGIPAVLAACGASLVGVLMLRFFILYAGQLTVA

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: COG3301

COG function: function code P; Formate-dependent nitrite reductase, membrane component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nrfD family [H]

Homologues:

Organism=Escherichia coli, GI1790509, Length=318, Percent_Identity=99.0566037735849, Blast_Score=615, Evalue=1e-177,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017566
- InterPro:   IPR005614 [H]

Pfam domain/function: PF03916 NrfD [H]

EC number: NA

Molecular weight: Translated: 35023; Mature: 34891

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TQTSAFHFESLVWDWPIAIYLFLIGISAGLVTLAVLLRRFYPQAGGADSTLLRTTLIVG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHC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HHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8057835; 8265357; 9278503 [H]