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The map label for this gene is lpfE [H]

Identifier: 209398023

GI number: 209398023

Start: 4555658

End: 4556188

Strand: Reverse

Name: lpfE [H]

Synonym: ECH74115_4917

Alternate gene names: 209398023

Gene position: 4556188-4555658 (Counterclockwise)

Preceding gene: 209397444

Following gene: 209399321

Centisome position: 81.77

GC content: 51.41

Gene sequence:

>531_bases
ATGAAGTTCAAACGATTGCTGCATAGCGGCATCGCCAGTTTGAGTCTGGTTGCCTGCGGGGTGAATGCGGCGACGGATCT
TGGCCCGGCAGGGGATATTCATTTCTCCATCACTATCACCACTAAAGCTTGCGAGATGGAAAAAAGCGATCTCGAAGTCG
ATATGGGAACAATGACGCTGCAAAAACCTGCGGCAGTCGGTACGGTGTTGAGCAAGAAAGATTTCACCATTGAACTCAAA
GAGTGCGATGGGATATCCAAAGCGACCGTTGAGATGGACAGTCAGTCGGACAGCGATGATGATTCCATGTTTGCCCTTGA
GGCTGGTGGCGCAACGGGTGTTGCGTTGAAGATAGAGGACGATAAAGGAACGCAGCAAGTTCCCAAAGGCTCCAGCGGAA
CGCCGATTGAATGGGCGATTGATGGCGAAACCACGTCGCTTCACTACCAGGCGAGTTATGTGGTCGTCAACACTCAGGCC
ACTGGTGGCACAGCGAATGCCCTTGTCAATTTTTCCATCACCTATGAGTAA

Upstream 100 bases:

>100_bases
ATTCGACTGCTGGCTTTACCGATTAGCACGACGGGTAAAGCGCCTAAAGGCGGGACGTTTGAAGGCGTAACGACCATATA
TCTTGAAATGGAGTGATGCC

Downstream 100 bases:

>100_bases
GTTACTGGGCCAGCATCCTGGCCCAACCTATCTCTGAATAGTCGTTAATCCGTTAAAATGGTCTATTCCGGACTTGCACT
TTTGTAAATTTGTGCTTCAT

Product: protein LpfE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MKFKRLLHSGIASLSLVACGVNAATDLGPAGDIHFSITITTKACEMEKSDLEVDMGTMTLQKPAAVGTVLSKKDFTIELK
ECDGISKATVEMDSQSDSDDDSMFALEAGGATGVALKIEDDKGTQQVPKGSSGTPIEWAIDGETTSLHYQASYVVVNTQA
TGGTANALVNFSITYE

Sequences:

>Translated_176_residues
MKFKRLLHSGIASLSLVACGVNAATDLGPAGDIHFSITITTKACEMEKSDLEVDMGTMTLQKPAAVGTVLSKKDFTIELK
ECDGISKATVEMDSQSDSDDDSMFALEAGGATGVALKIEDDKGTQQVPKGSSGTPIEWAIDGETTSLHYQASYVVVNTQA
TGGTANALVNFSITYE
>Mature_176_residues
MKFKRLLHSGIASLSLVACGVNAATDLGPAGDIHFSITITTKACEMEKSDLEVDMGTMTLQKPAAVGTVLSKKDFTIELK
ECDGISKATVEMDSQSDSDDDSMFALEAGGATGVALKIEDDKGTQQVPKGSSGTPIEWAIDGETTSLHYQASYVVVNTQA
TGGTANALVNFSITYE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI87082421, Length=184, Percent_Identity=31.5217391304348, Blast_Score=71, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 18475; Mature: 18475

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFKRLLHSGIASLSLVACGVNAATDLGPAGDIHFSITITTKACEMEKSDLEVDMGTMTL
CCHHHHHHHCHHHEEEEEECCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCEEEECEEEE
QKPAAVGTVLSKKDFTIELKECDGISKATVEMDSQSDSDDDSMFALEAGGATGVALKIED
ECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEC
DKGTQQVPKGSSGTPIEWAIDGETTSLHYQASYVVVNTQATGGTANALVNFSITYE
CCCCCCCCCCCCCCCEEEEECCCEEEEEEEEEEEEEEECCCCCCCEEEEEEEEEEC
>Mature Secondary Structure
MKFKRLLHSGIASLSLVACGVNAATDLGPAGDIHFSITITTKACEMEKSDLEVDMGTMTL
CCHHHHHHHCHHHEEEEEECCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCEEEECEEEE
QKPAAVGTVLSKKDFTIELKECDGISKATVEMDSQSDSDDDSMFALEAGGATGVALKIED
ECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEC
DKGTQQVPKGSSGTPIEWAIDGETTSLHYQASYVVVNTQATGGTANALVNFSITYE
CCCCCCCCCCCCCCCEEEEECCCEEEEEEEEEEEEEEECCCCCCCEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721701; 11677609 [H]