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The map label for this gene is ydeS [H]

Identifier: 209397662

GI number: 209397662

Start: 2024156

End: 2024686

Strand: Reverse

Name: ydeS [H]

Synonym: ECH74115_2117

Alternate gene names: 209397662

Gene position: 2024686-2024156 (Counterclockwise)

Preceding gene: 209396439

Following gene: 209400755

Centisome position: 36.34

GC content: 45.57

Gene sequence:

>531_bases
ATGAAATACAATAACATTATTTTCCTCGGTTTATGTCTGGGGTTAACCACCTATTCTGCTTTATCCGCAGATAGCGTTAT
TAAAATTAGCGGGCGCGTCCTCGATTATGGCTGCACAGTCTCATCGGATTCGCTTAATTTTACCGTAGATCTCCAAAAAA
ACAGTGCCAGACAATTTCCAACGACCGGTAGCACAAGTCCAGCCGTCCCTTTTCAGATTACGTTAAGTGAATGCAGCAAA
GGGACAACGGGGGTTCGGGTTGCATTTAACGGTATTGAGGACGCAGAAAATAATACTCTGTTGAAACTGGATGAGGGAAG
CAATACGGCCTCCGGTTTAGGTATAGAAATACTGGACGGAAATATGCGTCCGGTGAAACTGAATGACCTTCATGCCGGGA
TGCAGTGGATCCCACTGGTACCAGAACAGAACAATATTTTGCCTTACTCCGCTCGTCTGAAGTCAACTCAGAAGTCCGTC
AATCCGGGACTGGTGAGGGCTTCGGCAACCTTTACCCTTGAATTTCAATAA

Upstream 100 bases:

>100_bases
AAAAACTCAAACTGTATTGTCGATTACAAGCTTCCTGAAGTCTCTCCTGGAACCTTGCTGAACCAGCAGACAGCAATCTG
TCGCTAAGGAACAATAGATT

Downstream 100 bases:

>100_bases
TCAGAGTCAGATATGAAAAGACTTCACAAGAGGTTCCTCTTAGCTACGTTTTGCGCGTTATTAACAGCAACTCTCCAGGC
CGCCGATGTCACTATCACTG

Product: protein FimF homolog

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MKYNNIIFLGLCLGLTTYSALSADSVIKISGRVLDYGCTVSSDSLNFTVDLQKNSARQFPTTGSTSPAVPFQITLSECSK
GTTGVRVAFNGIEDAENNTLLKLDEGSNTASGLGIEILDGNMRPVKLNDLHAGMQWIPLVPEQNNILPYSARLKSTQKSV
NPGLVRASATFTLEFQ

Sequences:

>Translated_176_residues
MKYNNIIFLGLCLGLTTYSALSADSVIKISGRVLDYGCTVSSDSLNFTVDLQKNSARQFPTTGSTSPAVPFQITLSECSK
GTTGVRVAFNGIEDAENNTLLKLDEGSNTASGLGIEILDGNMRPVKLNDLHAGMQWIPLVPEQNNILPYSARLKSTQKSV
NPGLVRASATFTLEFQ
>Mature_176_residues
MKYNNIIFLGLCLGLTTYSALSADSVIKISGRVLDYGCTVSSDSLNFTVDLQKNSARQFPTTGSTSPAVPFQITLSECSK
GTTGVRVAFNGIEDAENNTLLKLDEGSNTASGLGIEILDGNMRPVKLNDLHAGMQWIPLVPEQNNILPYSARLKSTQKSV
NPGLVRASATFTLEFQ

Specific function: Unknown

COG id: COG3539

COG function: function code NU; P pilus assembly protein, pilin FimA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1787781, Length=176, Percent_Identity=99.4318181818182, Blast_Score=359, Evalue=1e-101,
Organism=Escherichia coli, GI1790773, Length=171, Percent_Identity=45.0292397660819, Blast_Score=149, Evalue=1e-37,
Organism=Escherichia coli, GI87081805, Length=177, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI87081753, Length=165, Percent_Identity=32.7272727272727, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI87082421, Length=153, Percent_Identity=28.7581699346405, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787174, Length=156, Percent_Identity=32.0512820512821, Blast_Score=64, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 18935; Mature: 18935

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYNNIIFLGLCLGLTTYSALSADSVIKISGRVLDYGCTVSSDSLNFTVDLQKNSARQFP
CCCCCEEEEEEHHHHHHHHHCCCCCEEEEECEEEEECCEEECCCEEEEEEEECCCCCCCC
TTGSTSPAVPFQITLSECSKGTTGVRVAFNGIEDAENNTLLKLDEGSNTASGLGIEILDG
CCCCCCCCCEEEEEHHHCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCEEEEECC
NMRPVKLNDLHAGMQWIPLVPEQNNILPYSARLKSTQKSVNPGLVRASATFTLEFQ
CCCEEEECCCCCCCEEEEECCCCCCEECHHHHHHHHHCCCCCCEEEEEEEEEEEEC
>Mature Secondary Structure
MKYNNIIFLGLCLGLTTYSALSADSVIKISGRVLDYGCTVSSDSLNFTVDLQKNSARQFP
CCCCCEEEEEEHHHHHHHHHCCCCCEEEEECEEEEECCEEECCCEEEEEEEECCCCCCCC
TTGSTSPAVPFQITLSECSKGTTGVRVAFNGIEDAENNTLLKLDEGSNTASGLGIEILDG
CCCCCCCCCEEEEEHHHCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCEEEEECC
NMRPVKLNDLHAGMQWIPLVPEQNNILPYSARLKSTQKSVNPGLVRASATFTLEFQ
CCCEEEECCCCCCCEEEEECCCCCCEECHHHHHHHHHCCCCCCEEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]