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The map label for this gene is fimD [H]

Identifier: 209396439

GI number: 209396439

Start: 2024700

End: 2026922

Strand: Reverse

Name: fimD [H]

Synonym: ECH74115_2118

Alternate gene names: 209396439

Gene position: 2026922-2024700 (Counterclockwise)

Preceding gene: 209399101

Following gene: 209397662

Centisome position: 36.38

GC content: 44.67

Gene sequence:

>2223_bases
TTGGTCGACGCATCAACTGAGTTTGATGTTGGTCAGCAACATCTGTCACTCTCCGTTCCGCAAATTTATGTTGGCAGAAT
GGCTCGCGGCTATGTTTCTCCTGATCTGTGGGAAGAAGGAATAAATGCTGGGCTTCTAAACTATAGTTTTAATGGTAATT
CTATTAATAATCGTAGTAACCATAATGCAGGAAAATCCAACTATGCATATTTGAATTTACAGAGTGGCATCAACATTGGT
AGTTGGCGACTACGCGATAACTCAACGTGGAGTTATAACAGTGGGAGTAGCAATTCATCTGACAGCAATAAATGGCAGCA
TATCAATACGTCGGCTGAACGTGACATTATTCCCTTACGCTCACGGTTAACGGTAGGTGATAGTTATACCGATGGCGATA
TTTTTGATAGTGTGAACTTTCGTGGCCTCAAAATAAATTCAACAGAAGCGATGTTGCCCGATAGCCAACATGGTTTCGCT
CCGGTGATTCATGGTATTGCCCGTGGCACCGCACAAGTGAGTGTAAAACAGAACGGATACGATGTTTATCAGACTACTGT
TCCACCCGGCCCTTTTACTATTGATGATATCAACTCTGCGGCCAATGGTGGTGATCTGCAAGTAACCATAAAAGAGGCAG
ACGGCAGTATTCAGACATTATATGTTCCTTATTCGTCTGTTCCGGTTCTCCAACGTGCTGGATATACGCGTTATGCGCTT
GCCATGGGGGAATATCGTAGTGGAAATAACCTGCAAAGCTCCCCCAGGTTCATACAAGGTAGCTTGATGCATGGACTGGA
AGGAAACTGGACACCTTATGGCGGAATGCAAATTGCAGAAGATTATCAGGCCTTCAACCTTGGTATTGGTAAAGATTTAG
GACTTTTTGGTGCCTTTTCTTTCGATATCACGCAGGCCAATACGACACTTGCAGATGGCACCCGTCACAGCGGGCAATCG
GTTAAATCCGTCTACAGCAAATCCTTCTACCAGACAGGAACCAATATCCAGGTCGCAGGATATCGCTATTCTACGCAAGG
TTTTTATAACTTATCCGACAGTGCCTACAGTCGAATGAGTGGTTACACCGTCAAGCCTCCTACCGGAGACAGCAATGAGC
AGACACAATTTATTGATTATTTTAATCTGTTCTACAGTAAGCGTGGTCAGGAACAAATAAGCATCTCTCAGCAGCTTGGA
AATTACGGTGCGACATTTTTCAGTGCCAGTCGCCAAAGTTACTGGAACACGTCACGCAGCGACCAGCAAATATCATTTGG
ATTAAATGTGCCGTTTGGTGATATTACGACTTCGCTGAATTACAGCTATTCCAATAATATATGGCAAAACGATCGGGATC
ATTTACTCGCTTTTACGCTTAATGTTCCCTTCAGTCATTGGATGCGTACAGACAGTCAGTCGGCATTTCGTAATTCAAAC
GCCAGTTACAGTATGTCAAACGATTTGAAAGGCGGCATGACCAATCTATCGGGGGTTTATGGCACTCTGCTGCCGGATAA
TAACCTGAATTATAGCGTTCAGGTCGGTAACACCCACGGAGGTAATACATCGTCTGGCACCAGTGGTTACAGTACTCTTA
ATTATCGTGGAGCTTACGGCAATACTAATGTCGGTTACAGTCGGAGTGGTGACAGCAGCCAGATTTATTACGGAATGAGT
GGTGGGATTATTGCTCATGCTGATGGCATCACCTTTGGACAGCCGCTGGGCGACACAATGGTTCTGGTTAAGGCTCCTGG
CGCTGATAATGTCAAAATAGAGAACCAGACCGGAATTCATACCGACTGGCGTGGCTATGCCATATTACCATTTGCGACAG
AATATAGAGAAAATCGTGTCGCTCTTAACGCGAATTCCCTTGCAGATAATGTTGAACTGGATGAAACCGTGGTCACTGTC
ATCCCAACTCACGGTGCTATTGCCAGAGCAACATTTAATGCACAAATCGGCGGGAAAGTATTAATGACGTTGAAGTACGG
TAATAAAAGCGTTCCATTCGGTGCAATTGTCACTCACGGAGAGAATAAAAATGGCAGCATTGTCGCGGAAAACGGTCAGG
TTTATCTGACTGGACTTCCACAGTCAGGGAAATTACAGGTTTCATGGGGCAATGATAAAAACTCAAACTGTATTGTCGAT
TACAAGCTTCCTGAAGTCTCTCCTGGAACCTTGCTGAACCAGCAGACAGCAATCTGTCGCTAA

Upstream 100 bases:

>100_bases
CAGTCTTGGCATAAAAAAATCTGCGTTATTAGACAATAAGGAACATTCAGCAGAAAAACATGTGCCGGACAACAGCGCAT
GCACACCACTTCAGGATCGT

Downstream 100 bases:

>100_bases
GGAACAATAGATTATGAAATACAATAACATTATTTTCCTCGGTTTATGTCTGGGGTTAACCACCTATTCTGCTTTATCCG
CAGATAGCGTTATTAAAATT

Product: fimbrial usher family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 740; Mature: 740

Protein sequence:

>740_residues
MVDASTEFDVGQQHLSLSVPQIYVGRMARGYVSPDLWEEGINAGLLNYSFNGNSINNRSNHNAGKSNYAYLNLQSGINIG
SWRLRDNSTWSYNSGSSNSSDSNKWQHINTSAERDIIPLRSRLTVGDSYTDGDIFDSVNFRGLKINSTEAMLPDSQHGFA
PVIHGIARGTAQVSVKQNGYDVYQTTVPPGPFTIDDINSAANGGDLQVTIKEADGSIQTLYVPYSSVPVLQRAGYTRYAL
AMGEYRSGNNLQSSPRFIQGSLMHGLEGNWTPYGGMQIAEDYQAFNLGIGKDLGLFGAFSFDITQANTTLADGTRHSGQS
VKSVYSKSFYQTGTNIQVAGYRYSTQGFYNLSDSAYSRMSGYTVKPPTGDSNEQTQFIDYFNLFYSKRGQEQISISQQLG
NYGATFFSASRQSYWNTSRSDQQISFGLNVPFGDITTSLNYSYSNNIWQNDRDHLLAFTLNVPFSHWMRTDSQSAFRNSN
ASYSMSNDLKGGMTNLSGVYGTLLPDNNLNYSVQVGNTHGGNTSSGTSGYSTLNYRGAYGNTNVGYSRSGDSSQIYYGMS
GGIIAHADGITFGQPLGDTMVLVKAPGADNVKIENQTGIHTDWRGYAILPFATEYRENRVALNANSLADNVELDETVVTV
IPTHGAIARATFNAQIGGKVLMTLKYGNKSVPFGAIVTHGENKNGSIVAENGQVYLTGLPQSGKLQVSWGNDKNSNCIVD
YKLPEVSPGTLLNQQTAICR

Sequences:

>Translated_740_residues
MVDASTEFDVGQQHLSLSVPQIYVGRMARGYVSPDLWEEGINAGLLNYSFNGNSINNRSNHNAGKSNYAYLNLQSGINIG
SWRLRDNSTWSYNSGSSNSSDSNKWQHINTSAERDIIPLRSRLTVGDSYTDGDIFDSVNFRGLKINSTEAMLPDSQHGFA
PVIHGIARGTAQVSVKQNGYDVYQTTVPPGPFTIDDINSAANGGDLQVTIKEADGSIQTLYVPYSSVPVLQRAGYTRYAL
AMGEYRSGNNLQSSPRFIQGSLMHGLEGNWTPYGGMQIAEDYQAFNLGIGKDLGLFGAFSFDITQANTTLADGTRHSGQS
VKSVYSKSFYQTGTNIQVAGYRYSTQGFYNLSDSAYSRMSGYTVKPPTGDSNEQTQFIDYFNLFYSKRGQEQISISQQLG
NYGATFFSASRQSYWNTSRSDQQISFGLNVPFGDITTSLNYSYSNNIWQNDRDHLLAFTLNVPFSHWMRTDSQSAFRNSN
ASYSMSNDLKGGMTNLSGVYGTLLPDNNLNYSVQVGNTHGGNTSSGTSGYSTLNYRGAYGNTNVGYSRSGDSSQIYYGMS
GGIIAHADGITFGQPLGDTMVLVKAPGADNVKIENQTGIHTDWRGYAILPFATEYRENRVALNANSLADNVELDETVVTV
IPTHGAIARATFNAQIGGKVLMTLKYGNKSVPFGAIVTHGENKNGSIVAENGQVYLTGLPQSGKLQVSWGNDKNSNCIVD
YKLPEVSPGTLLNQQTAICR
>Mature_740_residues
MVDASTEFDVGQQHLSLSVPQIYVGRMARGYVSPDLWEEGINAGLLNYSFNGNSINNRSNHNAGKSNYAYLNLQSGINIG
SWRLRDNSTWSYNSGSSNSSDSNKWQHINTSAERDIIPLRSRLTVGDSYTDGDIFDSVNFRGLKINSTEAMLPDSQHGFA
PVIHGIARGTAQVSVKQNGYDVYQTTVPPGPFTIDDINSAANGGDLQVTIKEADGSIQTLYVPYSSVPVLQRAGYTRYAL
AMGEYRSGNNLQSSPRFIQGSLMHGLEGNWTPYGGMQIAEDYQAFNLGIGKDLGLFGAFSFDITQANTTLADGTRHSGQS
VKSVYSKSFYQTGTNIQVAGYRYSTQGFYNLSDSAYSRMSGYTVKPPTGDSNEQTQFIDYFNLFYSKRGQEQISISQQLG
NYGATFFSASRQSYWNTSRSDQQISFGLNVPFGDITTSLNYSYSNNIWQNDRDHLLAFTLNVPFSHWMRTDSQSAFRNSN
ASYSMSNDLKGGMTNLSGVYGTLLPDNNLNYSVQVGNTHGGNTSSGTSGYSTLNYRGAYGNTNVGYSRSGDSSQIYYGMS
GGIIAHADGITFGQPLGDTMVLVKAPGADNVKIENQTGIHTDWRGYAILPFATEYRENRVALNANSLADNVELDETVVTV
IPTHGAIARATFNAQIGGKVLMTLKYGNKSVPFGAIVTHGENKNGSIVAENGQVYLTGLPQSGKLQVSWGNDKNSNCIVD
YKLPEVSPGTLLNQQTAICR

Specific function: Involved in the export and assembly of fimA fimbrial subunits across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1790772, Length=738, Percent_Identity=60.840108401084, Blast_Score=966, Evalue=0.0,
Organism=Escherichia coli, GI1787172, Length=746, Percent_Identity=45.5764075067024, Blast_Score=651, Evalue=0.0,
Organism=Escherichia coli, GI1786744, Length=739, Percent_Identity=43.4370771312585, Blast_Score=620, Evalue=1e-179,
Organism=Escherichia coli, GI1789533, Length=738, Percent_Identity=37.3983739837398, Blast_Score=452, Evalue=1e-128,
Organism=Escherichia coli, GI1786332, Length=738, Percent_Identity=33.3333333333333, Blast_Score=351, Evalue=8e-98,
Organism=Escherichia coli, GI1788427, Length=722, Percent_Identity=29.7783933518006, Blast_Score=296, Evalue=3e-81,
Organism=Escherichia coli, GI87081778, Length=734, Percent_Identity=27.3841961852861, Blast_Score=219, Evalue=5e-58,
Organism=Escherichia coli, GI1789610, Length=705, Percent_Identity=24.113475177305, Blast_Score=124, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 80697; Mature: 80697

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDASTEFDVGQQHLSLSVPQIYVGRMARGYVSPDLWEEGINAGLLNYSFNGNSINNRSN
CCCCCCCCCCCCHHEEECCCHHHHHHHHCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCC
HNAGKSNYAYLNLQSGINIGSWRLRDNSTWSYNSGSSNSSDSNKWQHINTSAERDIIPLR
CCCCCCCEEEEEECCCCCCCEEEEECCCEEEECCCCCCCCCCCCEEEECCCCCCCEEECC
SRLTVGDSYTDGDIFDSVNFRGLKINSTEAMLPDSQHGFAPVIHGIARGTAQVSVKQNGY
CEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCE
DVYQTTVPPGPFTIDDINSAANGGDLQVTIKEADGSIQTLYVPYSSVPVLQRAGYTRYAL
EEEEEECCCCCEEHHCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCHHHHCCCEEEEE
AMGEYRSGNNLQSSPRFIQGSLMHGLEGNWTPYGGMQIAEDYQAFNLGIGKDLGLFGAFS
EECCCCCCCCCCCCCCEEEHHHHHCCCCCCCCCCCCEEECCCEEEECCCCCCCCEEEEEE
FDITQANTTLADGTRHSGQSVKSVYSKSFYQTGTNIQVAGYRYSTQGFYNLSDSAYSRMS
EEEEECCCEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCEEECCHHHHHHHC
GYTVKPPTGDSNEQTQFIDYFNLFYSKRGQEQISISQQLGNYGATFFSASRQSYWNTSRS
CCEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEECCCHHHCCCCCC
DQQISFGLNVPFGDITTSLNYSYSNNIWQNDRDHLLAFTLNVPFSHWMRTDSQSAFRNSN
CCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCHHHHHCCCCHHHHHCCC
ASYSMSNDLKGGMTNLSGVYGTLLPDNNLNYSVQVGNTHGGNTSSGTSGYSTLNYRGAYG
CCEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCC
NTNVGYSRSGDSSQIYYGMSGGIIAHADGITFGQPLGDTMVLVKAPGADNVKIENQTGIH
CCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCCCEEECCCCCCC
TDWRGYAILPFATEYRENRVALNANSLADNVELDETVVTVIPTHGAIARATFNAQIGGKV
CCCCCEEEEEEHHCCCCCEEEEECCCCCCCCEECCEEEEEEECCCCEEEEEECCCCCCEE
LMTLKYGNKSVPFGAIVTHGENKNGSIVAENGQVYLTGLPQSGKLQVSWGNDKNSNCIVD
EEEEEECCCCCCCEEEEECCCCCCCCEEEECCEEEEEECCCCCEEEEEECCCCCCCEEEE
YKLPEVSPGTLLNQQTAICR
EECCCCCCCCEECCCHHCCC
>Mature Secondary Structure
MVDASTEFDVGQQHLSLSVPQIYVGRMARGYVSPDLWEEGINAGLLNYSFNGNSINNRSN
CCCCCCCCCCCCHHEEECCCHHHHHHHHCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCC
HNAGKSNYAYLNLQSGINIGSWRLRDNSTWSYNSGSSNSSDSNKWQHINTSAERDIIPLR
CCCCCCCEEEEEECCCCCCCEEEEECCCEEEECCCCCCCCCCCCEEEECCCCCCCEEECC
SRLTVGDSYTDGDIFDSVNFRGLKINSTEAMLPDSQHGFAPVIHGIARGTAQVSVKQNGY
CEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCE
DVYQTTVPPGPFTIDDINSAANGGDLQVTIKEADGSIQTLYVPYSSVPVLQRAGYTRYAL
EEEEEECCCCCEEHHCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCHHHHCCCEEEEE
AMGEYRSGNNLQSSPRFIQGSLMHGLEGNWTPYGGMQIAEDYQAFNLGIGKDLGLFGAFS
EECCCCCCCCCCCCCCEEEHHHHHCCCCCCCCCCCCEEECCCEEEECCCCCCCCEEEEEE
FDITQANTTLADGTRHSGQSVKSVYSKSFYQTGTNIQVAGYRYSTQGFYNLSDSAYSRMS
EEEEECCCEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCEEECCHHHHHHHC
GYTVKPPTGDSNEQTQFIDYFNLFYSKRGQEQISISQQLGNYGATFFSASRQSYWNTSRS
CCEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEECCCHHHCCCCCC
DQQISFGLNVPFGDITTSLNYSYSNNIWQNDRDHLLAFTLNVPFSHWMRTDSQSAFRNSN
CCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCHHHHHCCCCHHHHHCCC
ASYSMSNDLKGGMTNLSGVYGTLLPDNNLNYSVQVGNTHGGNTSSGTSGYSTLNYRGAYG
CCEEECCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEECCCC
NTNVGYSRSGDSSQIYYGMSGGIIAHADGITFGQPLGDTMVLVKAPGADNVKIENQTGIH
CCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCCCEEECCCCCCC
TDWRGYAILPFATEYRENRVALNANSLADNVELDETVVTVIPTHGAIARATFNAQIGGKV
CCCCCEEEEEEHHCCCCCEEEEECCCCCCCCEECCEEEEEEECCCCEEEEEECCCCCCEE
LMTLKYGNKSVPFGAIVTHGENKNGSIVAENGQVYLTGLPQSGKLQVSWGNDKNSNCIVD
EEEEEECCCCCCCEEEEECCCCCCCCEEEECCEEEEEECCCCCEEEEEECCCCCCCEEEE
YKLPEVSPGTLLNQQTAICR
EECCCCCCCCEECCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1970114; 7610040; 9278503 [H]