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The map label for this gene is ydcS [H]

Identifier: 209397208

GI number: 209397208

Start: 1942008

End: 1943153

Strand: Direct

Name: ydcS [H]

Synonym: ECH74115_2045

Alternate gene names: 209397208

Gene position: 1942008-1943153 (Clockwise)

Preceding gene: 209399584

Following gene: 209398098

Centisome position: 34.85

GC content: 52.27

Gene sequence:

>1146_bases
ATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTGCGCTCAGCATGACAATAATGACCGCTCACGCCGCCGAACCGCCTAC
CAATTTAGATAAACCGGAAGGGCGACTGGATATTATCGCCTGGCCGGGATATATCGAACGCGGACAAACTGATAAACAAT
ACGACTGGGTAACGCAATTCGAAAAAGAGACAGGCTGCGCGGTGAATGTTAAAACCGCCGCGACTTCCGATGAGATGGTC
AGTCTGATGACCAAAGGGGGTTACGATCTGGTTACGGCATCCGGCGATGCCTCGCTGCGTTTGATTATGGGTAAACGCGT
GCAGCCGATTAATACCGCCTTGATTCCCAACTGGAAAACGCTTGATCCGCGCGTGGTTAAAGGCGACTGGTTTAACGTTG
GCGGCAAAGTTTACGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTAAAACCTTCCCGACGCCGCCG
GATAGCTGGCAAGTGGTTTTTGTTGAGCAAAATCTGCAGGACGGCAAGAGCAATAAAGGCCGCGTTCAGGCTTATGATGG
CCCTATCTACATTGCGGACGCTGCGTTGTTCGTTAAAGCCACTCAGCCGCAGTTGGGCATCAGCGATCCGTATCAACTCA
CCGAAGAACAGTACCAGGCGGTGCTGAAAGTGCTGCGTGATCAACATAGTTTGATCCATCGCTACTGGCATGACACTACC
GTGCAAATGAGCGATTTCAAAAACGAGGGTGTGGTCGCTTCCAGTGCCTGGCCCTATCAGACCAACGCCCTGAAAGCCGA
AGGTCAGCCTGTCGCTACCGTTTTCCCGAAGGAGGGCGTTACCGGTTGGGCTGACACCACCATGCTACATAGCGAAGCGA
AACATCCGGTTTGCGCCTACAAATGGATGAACTGGTCATTAACGCCAAAAGTGCAGGGCGATGTGGCGGCCTGGTTTGGC
TCGTTACCAGTCGTGCCGGAAGGGTGTAAAGCCAGTTCGTTATTAGGCGAGAAAGGTTGTGAAACAAACGGTTTTAACTA
TTTCGATAAAATAGCCTTCTGGAAAACGCCTATAGCAGAAGGGGGCAAGTTTGTTCCCTACAGTCGCTGGACGCAGGATT
ACATTGCCATTATGGGCGGTCGCTAA

Upstream 100 bases:

>100_bases
GGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAAT
TACGACAGGAGTAAGACCTT

Downstream 100 bases:

>100_bases
CTTCGCTGGGGTGCTTTATGACGTACGCAGTGGAGTTTGACAACGTCTCGCGGTTGTACGGTGACGTGCGCGCAGTAGAT
GGCGTCAGTATTGCGATAAA

Product: ABC transporter, periplasmic substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 380

Protein sequence:

>381_residues
MSKTFARSSLCALSMTIMTAHAAEPPTNLDKPEGRLDIIAWPGYIERGQTDKQYDWVTQFEKETGCAVNVKTAATSDEMV
SLMTKGGYDLVTASGDASLRLIMGKRVQPINTALIPNWKTLDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPTPP
DSWQVVFVEQNLQDGKSNKGRVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRDQHSLIHRYWHDTT
VQMSDFKNEGVVASSAWPYQTNALKAEGQPVATVFPKEGVTGWADTTMLHSEAKHPVCAYKWMNWSLTPKVQGDVAAWFG
SLPVVPEGCKASSLLGEKGCETNGFNYFDKIAFWKTPIAEGGKFVPYSRWTQDYIAIMGGR

Sequences:

>Translated_381_residues
MSKTFARSSLCALSMTIMTAHAAEPPTNLDKPEGRLDIIAWPGYIERGQTDKQYDWVTQFEKETGCAVNVKTAATSDEMV
SLMTKGGYDLVTASGDASLRLIMGKRVQPINTALIPNWKTLDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPTPP
DSWQVVFVEQNLQDGKSNKGRVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRDQHSLIHRYWHDTT
VQMSDFKNEGVVASSAWPYQTNALKAEGQPVATVFPKEGVTGWADTTMLHSEAKHPVCAYKWMNWSLTPKVQGDVAAWFG
SLPVVPEGCKASSLLGEKGCETNGFNYFDKIAFWKTPIAEGGKFVPYSRWTQDYIAIMGGR
>Mature_380_residues
SKTFARSSLCALSMTIMTAHAAEPPTNLDKPEGRLDIIAWPGYIERGQTDKQYDWVTQFEKETGCAVNVKTAATSDEMVS
LMTKGGYDLVTASGDASLRLIMGKRVQPINTALIPNWKTLDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPTPPD
SWQVVFVEQNLQDGKSNKGRVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRDQHSLIHRYWHDTTV
QMSDFKNEGVVASSAWPYQTNALKAEGQPVATVFPKEGVTGWADTTMLHSEAKHPVCAYKWMNWSLTPKVQGDVAAWFGS
LPVVPEGCKASSLLGEKGCETNGFNYFDKIAFWKTPIAEGGKFVPYSRWTQDYIAIMGGR

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV [H]

COG id: COG0687

COG function: function code E; Spermidine/putrescine-binding periplasmic protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein potD/potF family [H]

Homologues:

Organism=Escherichia coli, GI1787711, Length=381, Percent_Identity=98.9501312335958, Blast_Score=785, Evalue=0.0,
Organism=Escherichia coli, GI1787078, Length=295, Percent_Identity=26.1016949152542, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR001188 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 42390; Mature: 42259

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTFARSSLCALSMTIMTAHAAEPPTNLDKPEGRLDIIAWPGYIERGQTDKQYDWVTQF
CCCCHHHHHHHHHHEEEHEEECCCCCCCCCCCCCCEEEEECCCHHCCCCCCCCHHHHHHH
EKETGCAVNVKTAATSDEMVSLMTKGGYDLVTASGDASLRLIMGKRVQPINTALIPNWKT
HHCCCCEEEEEECCCHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCCEEECCCCCC
LDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPTPPDSWQVVFVEQNLQDGKSNKG
CCCEEEECCEEECCCEEECCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC
RVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRDQHSLIHRYWHDTT
EEEEECCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
VQMSDFKNEGVVASSAWPYQTNALKAEGQPVATVFPKEGVTGWADTTMLHSEAKHPVCAY
EEECCCCCCCEEECCCCCCCCCCEECCCCEEEEECCCCCCCCCCHHHHHHHCCCCCEEEE
KWMNWSLTPKVQGDVAAWFGSLPVVPEGCKASSLLGEKGCETNGFNYFDKIAFWKTPIAE
EECCEEECCCCCCCHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHCCCCHHC
GGKFVPYSRWTQDYIAIMGGR
CCCCCCCHHCCCCEEEEECCC
>Mature Secondary Structure 
SKTFARSSLCALSMTIMTAHAAEPPTNLDKPEGRLDIIAWPGYIERGQTDKQYDWVTQF
CCCHHHHHHHHHHEEEHEEECCCCCCCCCCCCCCEEEEECCCHHCCCCCCCCHHHHHHH
EKETGCAVNVKTAATSDEMVSLMTKGGYDLVTASGDASLRLIMGKRVQPINTALIPNWKT
HHCCCCEEEEEECCCHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCCEEECCCCCC
LDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPTPPDSWQVVFVEQNLQDGKSNKG
CCCEEEECCEEECCCEEECCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCC
RVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRDQHSLIHRYWHDTT
EEEEECCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
VQMSDFKNEGVVASSAWPYQTNALKAEGQPVATVFPKEGVTGWADTTMLHSEAKHPVCAY
EEECCCCCCCEEECCCCCCCCCCEECCCCEEEEECCCCCCCCCCHHHHHHHCCCCCEEEE
KWMNWSLTPKVQGDVAAWFGSLPVVPEGCKASSLLGEKGCETNGFNYFDKIAFWKTPIAE
EECCEEECCCCCCCHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHCCCCHHC
GGKFVPYSRWTQDYIAIMGGR
CCCCCCCHHCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]