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The map label for this gene is yddK [H]

Identifier: 209397006

GI number: 209397006

Start: 1978202

End: 1979461

Strand: Reverse

Name: yddK [H]

Synonym: ECH74115_2080

Alternate gene names: 209397006

Gene position: 1979461-1978202 (Counterclockwise)

Preceding gene: 209396427

Following gene: 209399656

Centisome position: 35.52

GC content: 33.02

Gene sequence:

>1260_bases
ATGAAATTCCCTTCAATATTTAACAAAATAAAACCACAATCCATACAGCAACATCCAGAAAAAAATCAACTTAACTGGAT
GCTCGAATTAAATAAATGGAAAGAAGAACGTATACTTACAGGTGAAATCCATCGTCCGGAATGTCGAAACGAAGCCGCTA
AAAGGATAAGCTGTGCTTTTTTGTCGAAACAGAATGACATTGATTTATCAGGACTTAATTTATCTACTCAACCACCAGGG
CTGCAAAACTTCACCTCTATCAATCTTGATAATAACCAACTCACACATTTTGATGCAACCAACTACGATAGACTCGTAAA
ACTTAGTCTGAATAGTAACACTCTTGAGTCAATAAATATTCATCAAGGCAGAAATGTAAGCATTACACATATATCTATGA
ATAATAATTGTCTCAGAAATATTGATATAGATAGGCTTTCATCAATTACTTATTTTAGTGCGGCACATAATAAACTAGAG
TTTGTGCAATTAGAATCTTGCGAATGGCTGCAATACCTGAATCTCAGCCATAATCAATTAACTGATATTGTTACAGGAAA
TAAAGAAGAACTCTTACTGCTGGATCTATCCCATAATAAACTAGCAAGTTTACACAATGCCTTATTTCCCAACTTAAATA
CGTTACTTATCAACAACAACTTGCTTTCTGAAATTAAAATGTTTTATAGCAACTTCTGCAAAGTTCAGACATTAAACGCT
GCTAACAATCAGTTGGAAAAAATAAACCTTCATTTCCTGACTTATCTTTCATCTATCAAAAGTTTAAGGCTGGACAATAA
TAAAATAACTCGCATTGATACTGAGAACACATCCGATATTAGAAGTTTATTCCCCATAATAAAGAAGAGCGAAAGCTTAA
ATTTTTTAAATATTTCTGGCGAGAACAATTGCCCTACTATCCAGCTCATGTTATTTAATTTGTTTTCCCCAGCACTTAAG
CTTAATACTGGCCTGGCAATTCTTTCGCCTGGTGCATTTGAAGATCACTCTGACGGATTAGATGTGGATAACGAATTGTT
TCACTATACTATTAATAAAGCATATACCCCATATAATATACATACTTATAAAACAGAAGAAGTTGTAAACCAGAGGAATA
TAAAAATTAAAAATATGACCTTAGATGAAATAAACAATACTTATTGTAATAACGATTATTACAATGAGGCAATAAGAGAG
GAACCGATAGACTTTCTGGACAGATCGTTTTCCTCCAGCTCATGGCCTTTTTATCACTAA

Upstream 100 bases:

>100_bases
ATAATTGGTTAAGCCAATCCTTTACAACAGAGTTATAAAACACATCCTGGTTTATCAAGGGTGATAAATCAGAAAAACAT
TGTATTACTATGGAGCAGTT

Downstream 100 bases:

>100_bases
TTCTATAAGTGTCTGGTCTTGTTAAAAATATAGTTAATATACAACCCTTTGGATTCATCATCTGAAGGGTTGAATCATGA
CATGCGTACATAGCTTAACC

Product: leucine-rich repeat protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MKFPSIFNKIKPQSIQQHPEKNQLNWMLELNKWKEERILTGEIHRPECRNEAAKRISCAFLSKQNDIDLSGLNLSTQPPG
LQNFTSINLDNNQLTHFDATNYDRLVKLSLNSNTLESINIHQGRNVSITHISMNNNCLRNIDIDRLSSITYFSAAHNKLE
FVQLESCEWLQYLNLSHNQLTDIVTGNKEELLLLDLSHNKLASLHNALFPNLNTLLINNNLLSEIKMFYSNFCKVQTLNA
ANNQLEKINLHFLTYLSSIKSLRLDNNKITRIDTENTSDIRSLFPIIKKSESLNFLNISGENNCPTIQLMLFNLFSPALK
LNTGLAILSPGAFEDHSDGLDVDNELFHYTINKAYTPYNIHTYKTEEVVNQRNIKIKNMTLDEINNTYCNNDYYNEAIRE
EPIDFLDRSFSSSSWPFYH

Sequences:

>Translated_419_residues
MKFPSIFNKIKPQSIQQHPEKNQLNWMLELNKWKEERILTGEIHRPECRNEAAKRISCAFLSKQNDIDLSGLNLSTQPPG
LQNFTSINLDNNQLTHFDATNYDRLVKLSLNSNTLESINIHQGRNVSITHISMNNNCLRNIDIDRLSSITYFSAAHNKLE
FVQLESCEWLQYLNLSHNQLTDIVTGNKEELLLLDLSHNKLASLHNALFPNLNTLLINNNLLSEIKMFYSNFCKVQTLNA
ANNQLEKINLHFLTYLSSIKSLRLDNNKITRIDTENTSDIRSLFPIIKKSESLNFLNISGENNCPTIQLMLFNLFSPALK
LNTGLAILSPGAFEDHSDGLDVDNELFHYTINKAYTPYNIHTYKTEEVVNQRNIKIKNMTLDEINNTYCNNDYYNEAIRE
EPIDFLDRSFSSSSWPFYH
>Mature_419_residues
MKFPSIFNKIKPQSIQQHPEKNQLNWMLELNKWKEERILTGEIHRPECRNEAAKRISCAFLSKQNDIDLSGLNLSTQPPG
LQNFTSINLDNNQLTHFDATNYDRLVKLSLNSNTLESINIHQGRNVSITHISMNNNCLRNIDIDRLSSITYFSAAHNKLE
FVQLESCEWLQYLNLSHNQLTDIVTGNKEELLLLDLSHNKLASLHNALFPNLNTLLINNNLLSEIKMFYSNFCKVQTLNA
ANNQLEKINLHFLTYLSSIKSLRLDNNKITRIDTENTSDIRSLFPIIKKSESLNFLNISGENNCPTIQLMLFNLFSPALK
LNTGLAILSPGAFEDHSDGLDVDNELFHYTINKAYTPYNIHTYKTEEVVNQRNIKIKNMTLDEINNTYCNNDYYNEAIRE
EPIDFLDRSFSSSSWPFYH

Specific function: Unknown

COG id: COG4886

COG function: function code S; Leucine-rich repeat (LRR) protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 9 LRR (leucine-rich) repeats [H]

Homologues:

Organism=Escherichia coli, GI1787744, Length=111, Percent_Identity=91.8918918918919, Blast_Score=218, Evalue=8e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001611 [H]

Pfam domain/function: PF00560 LRR_1 [H]

EC number: NA

Molecular weight: Translated: 48410; Mature: 48410

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFPSIFNKIKPQSIQQHPEKNQLNWMLELNKWKEERILTGEIHRPECRNEAAKRISCAF
CCCHHHHHHCCCHHHHHCCCCCCEEEEEEECCCCCCCEEECCCCCCHHHHHHHHHEEHEE
LSKQNDIDLSGLNLSTQPPGLQNFTSINLDNNQLTHFDATNYDRLVKLSLNSNTLESINI
ECCCCCCCEECCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCEEEEEEECCCCEEEEEE
HQGRNVSITHISMNNNCLRNIDIDRLSSITYFSAAHNKLEFVQLESCEWLQYLNLSHNQL
CCCCCEEEEEEECCCCEEECCCHHHHCCEEEEHHCCCCEEEEEECCCCHHHHHCCCCHHH
TDIVTGNKEELLLLDLSHNKLASLHNALFPNLNTLLINNNLLSEIKMFYSNFCKVQTLNA
HHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCEEEEECC
ANNQLEKINLHFLTYLSSIKSLRLDNNKITRIDTENTSDIRSLFPIIKKSESLNFLNISG
CCCCHHEEHHHHHHHHHHHHHEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
ENNCPTIQLMLFNLFSPALKLNTGLAILSPGAFEDHSDGLDVDNELFHYTINKAYTPYNI
CCCCCEEEEEHHHHHCCHHEECCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCEE
HTYKTEEVVNQRNIKIKNMTLDEINNTYCNNDYYNEAIREEPIDFLDRSFSSSSWPFYH
EEEEHHHHHCCCCEEEEEEEHHHCCCCCCCCCHHHHHHHHCCHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKFPSIFNKIKPQSIQQHPEKNQLNWMLELNKWKEERILTGEIHRPECRNEAAKRISCAF
CCCHHHHHHCCCHHHHHCCCCCCEEEEEEECCCCCCCEEECCCCCCHHHHHHHHHEEHEE
LSKQNDIDLSGLNLSTQPPGLQNFTSINLDNNQLTHFDATNYDRLVKLSLNSNTLESINI
ECCCCCCCEECCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCEEEEEEECCCCEEEEEE
HQGRNVSITHISMNNNCLRNIDIDRLSSITYFSAAHNKLEFVQLESCEWLQYLNLSHNQL
CCCCCEEEEEEECCCCEEECCCHHHHCCEEEEHHCCCCEEEEEECCCCHHHHHCCCCHHH
TDIVTGNKEELLLLDLSHNKLASLHNALFPNLNTLLINNNLLSEIKMFYSNFCKVQTLNA
HHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCEEEEECC
ANNQLEKINLHFLTYLSSIKSLRLDNNKITRIDTENTSDIRSLFPIIKKSESLNFLNISG
CCCCHHEEHHHHHHHHHHHHHEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
ENNCPTIQLMLFNLFSPALKLNTGLAILSPGAFEDHSDGLDVDNELFHYTINKAYTPYNI
CCCCCEEEEEHHHHHCCHHEECCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCEE
HTYKTEEVVNQRNIKIKNMTLDEINNTYCNNDYYNEAIREEPIDFLDRSFSSSSWPFYH
EEEEHHHHHCCCCEEEEEEEHHHCCCCCCCCCHHHHHHHHCCHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]