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The map label for this gene is symE

Identifier: 209396668

GI number: 209396668

Start: 5510915

End: 5511256

Strand: Reverse

Name: symE

Synonym: ECH74115_5858

Alternate gene names: 209396668

Gene position: 5511256-5510915 (Counterclockwise)

Preceding gene: 209396465

Following gene: 209397786

Centisome position: 98.91

GC content: 55.26

Gene sequence:

>342_bases
ATGACTGATACGCATTCTATTGCACAACCGTTCGAAGCAGAAGTCTCCCCGGCAAATAACCGTCAATTAACCGTGAGTTA
TGCGAGTCGTTACCCGGATTACAGCCGTATTCCCGCCATCACCCTGAAAGGTCAGTGGCTGGAAGCCGCCGGTTTTGCCA
CCGGCACGGTGGTAGATGTCAAAGTGATGGAAGGCTGTATTGTCCTCACCGCCCAACCACCCGCCGCCGCCGAGAGCGAA
CTGATGCAGTCGCTGCGCCAGGTGTGCAAGCTGTCGGCGCGTAAACAAAGGCAGGTGCAGGAGTTTATTGGGGTGATTGC
GGGTAAACAGAAAGTTGCCTGA

Upstream 100 bases:

>100_bases
ATATTTACTGATGATATATCCAGGTATTTAGCGCGGTGCGGATGTGCGCCAACACACCCGCACCGCTAATCACAATCACT
ATTTATAGGGAATAGCAGTT

Downstream 100 bases:

>100_bases
TACATTGACCCGGTAGCGCCAGGACTACCGGGCATTTTTCGCTGCGTTATACCAACGCGCTCTCCATCTGTTTTTCAAAT
GCCTGACGAATTAACCCCAT

Product: endoribonuclease SymE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 112

Protein sequence:

>113_residues
MTDTHSIAQPFEAEVSPANNRQLTVSYASRYPDYSRIPAITLKGQWLEAAGFATGTVVDVKVMEGCIVLTAQPPAAAESE
LMQSLRQVCKLSARKQRQVQEFIGVIAGKQKVA

Sequences:

>Translated_113_residues
MTDTHSIAQPFEAEVSPANNRQLTVSYASRYPDYSRIPAITLKGQWLEAAGFATGTVVDVKVMEGCIVLTAQPPAAAESE
LMQSLRQVCKLSARKQRQVQEFIGVIAGKQKVA
>Mature_112_residues
TDTHSIAQPFEAEVSPANNRQLTVSYASRYPDYSRIPAITLKGQWLEAAGFATGTVVDVKVMEGCIVLTAQPPAAAESEL
MQSLRQVCKLSARKQRQVQEFIGVIAGKQKVA

Specific function: Involved in the degradation and recycling of damaged RNA. It is itself a target for degradation by the ATP-dependent protease La

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the symE family

Homologues:

Organism=Escherichia coli, GI145693217, Length=113, Percent_Identity=93.8053097345133, Blast_Score=221, Evalue=8e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SYME_ECO55 (B7LDZ6)

Other databases:

- EMBL:   CU928145
- RefSeq:   YP_002405852.1
- EnsemblBacteria:   EBESCT00000129594
- GeneID:   7145280
- GenomeReviews:   CU928145_GR
- KEGG:   eck:EC55989_5009
- GeneTree:   EBGT00050000011685
- HOGENOM:   HBG468060
- OMA:   YTRIPAI
- ProtClustDB:   PRK13605
- BioCyc:   ECOL585055:EC55989_5009-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01193
- InterPro:   IPR020883
- InterPro:   IPR014944

Pfam domain/function: PF08845 DUF1813

EC number: NA

Molecular weight: Translated: 12294; Mature: 12163

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTHSIAQPFEAEVSPANNRQLTVSYASRYPDYSRIPAITLKGQWLEAAGFATGTVVDV
CCCCCCCCCCCCCCCCCCCCCEEEEEEHHCCCCCCCCCEEEECCCEECCCCCCCCCEEEE
KVMEGCIVLTAQPPAAAESELMQSLRQVCKLSARKQRQVQEFIGVIAGKQKVA
EECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TDTHSIAQPFEAEVSPANNRQLTVSYASRYPDYSRIPAITLKGQWLEAAGFATGTVVDV
CCCCCCCCCCCCCCCCCCCCEEEEEEHHCCCCCCCCCEEEECCCEECCCCCCCCCEEEE
KVMEGCIVLTAQPPAAAESELMQSLRQVCKLSARKQRQVQEFIGVIAGKQKVA
EECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA