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The map label for this gene is rfaS [C]

Identifier: 209696420

GI number: 209696420

Start: 3280302

End: 3281303

Strand: Direct

Name: rfaS [C]

Synonym: VSAL_I3030

Alternate gene names: 209696420

Gene position: 3280302-3281303 (Clockwise)

Preceding gene: 209696419

Following gene: 209696421

Centisome position: 98.65

GC content: 29.54

Gene sequence:

>1002_bases
ATGTTAAAGAATAAAAAAATACTTTTCATTGCGCCATCATTTTTTGGTTATGAAAAAGACATCACTGATGAATTGATAGC
ATTAGGTGTGGATGTTGACTATTTTGATGAACGGCCGTTTACATCATCGATAGCTAAAATCCTTAATAGATTAAACTTTA
AAACTTTGATTAAGAGTGATATTGAAAAACACTTTACACAAATATGCTATAAAGCTACTGAAAAAAAATACGATTATTTG
TTTGTGATATCTCCAGAGACTTTAGAGCAGAAATTTATAGAAAATATCCAGTCTGCTAATGAAAGTATGATTTCAATTTT
ATACATGTGGGATTCGTTTAAAAATAAATCCAATGCAAAAAAAGTTGTATCTTGTTTTGATAGAGTATTCTCTTTTGACC
CGACTGATCGTATAAGTGGTGTCGATATAAGATTCTTGGCGCTTTTCTATAACAATAATTTTAAAAGTATAGAACGAGAT
AAATTAGTTACTACTCAATATGCAGTGTCTTTTATTGGCACTGTTCATAGTGATAGAGTTAAACTTGCCAAATCAATCAT
GAAGCAATTTAAAGATAGAGGTTTTAATACTTTTAGCTTCTTCTATTGCTCTAGTAAATTACTTTTTATATTAAAAAAAA
TGTTTACTCGTGAATTTGATTTTATCTCTTATAACGAAGTGTCTTTTAGTTCAATGTCAAAGTTAGAGATAAAAAATGTT
TTTATTAATTCTAGCGCTGTAATTGATATTCAGCATCCTGATCAAACTGGATTAACCATGCGCTCTATAGAAATGCTTGG
GTTAAATAAAAAGCTGATCATGACTAATGCGGATATAAAGAACTATGCATTTTATAGCGAAAGTAATGTTCTCGTTATTG
ACCGAGATGCGCCTGTTATTTCAGAAAGATTCATGTCATCTATCTACTTAAAACCTGAGCAAGAAATTTATGATAAATAT
TCTTTGCAAAGTTGGATCTGCACGTTATTTGATGCTGATTAA

Upstream 100 bases:

>100_bases
TCAACAAGAAGTTCAAGCTGACTTGTATGAAAGCTCCATTGCTGAAATGAAGTCAAAAGGCTTGTATAAATAACATTTAT
TTTAATAAGTATGAATCGTT

Downstream 100 bases:

>100_bases
AAGGAGTTTTTTTTGCCGAAAATATGCACAACTAATTTTAGACCTGAAGCGGTATTGTTAACCGGAGTCAGTGGGTTTAT
TGGTTCTGTTGTAAATAAAT

Product: lipopolysaccharide biosynthesis protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MLKNKKILFIAPSFFGYEKDITDELIALGVDVDYFDERPFTSSIAKILNRLNFKTLIKSDIEKHFTQICYKATEKKYDYL
FVISPETLEQKFIENIQSANESMISILYMWDSFKNKSNAKKVVSCFDRVFSFDPTDRISGVDIRFLALFYNNNFKSIERD
KLVTTQYAVSFIGTVHSDRVKLAKSIMKQFKDRGFNTFSFFYCSSKLLFILKKMFTREFDFISYNEVSFSSMSKLEIKNV
FINSSAVIDIQHPDQTGLTMRSIEMLGLNKKLIMTNADIKNYAFYSESNVLVIDRDAPVISERFMSSIYLKPEQEIYDKY
SLQSWICTLFDAD

Sequences:

>Translated_333_residues
MLKNKKILFIAPSFFGYEKDITDELIALGVDVDYFDERPFTSSIAKILNRLNFKTLIKSDIEKHFTQICYKATEKKYDYL
FVISPETLEQKFIENIQSANESMISILYMWDSFKNKSNAKKVVSCFDRVFSFDPTDRISGVDIRFLALFYNNNFKSIERD
KLVTTQYAVSFIGTVHSDRVKLAKSIMKQFKDRGFNTFSFFYCSSKLLFILKKMFTREFDFISYNEVSFSSMSKLEIKNV
FINSSAVIDIQHPDQTGLTMRSIEMLGLNKKLIMTNADIKNYAFYSESNVLVIDRDAPVISERFMSSIYLKPEQEIYDKY
SLQSWICTLFDAD
>Mature_333_residues
MLKNKKILFIAPSFFGYEKDITDELIALGVDVDYFDERPFTSSIAKILNRLNFKTLIKSDIEKHFTQICYKATEKKYDYL
FVISPETLEQKFIENIQSANESMISILYMWDSFKNKSNAKKVVSCFDRVFSFDPTDRISGVDIRFLALFYNNNFKSIERD
KLVTTQYAVSFIGTVHSDRVKLAKSIMKQFKDRGFNTFSFFYCSSKLLFILKKMFTREFDFISYNEVSFSSMSKLEIKNV
FINSSAVIDIQHPDQTGLTMRSIEMLGLNKKLIMTNADIKNYAFYSESNVLVIDRDAPVISERFMSSIYLKPEQEIYDKY
SLQSWICTLFDAD

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38907; Mature: 38907

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKNKKILFIAPSFFGYEKDITDELIALGVDVDYFDERPFTSSIAKILNRLNFKTLIKSD
CCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHH
IEKHFTQICYKATEKKYDYLFVISPETLEQKFIENIQSANESMISILYMWDSFKNKSNAK
HHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCHHHEEEEEEHHHHCCCCHHH
KVVSCFDRVFSFDPTDRISGVDIRFLALFYNNNFKSIERDKLVTTQYAVSFIGTVHSDRV
HHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
KLAKSIMKQFKDRGFNTFSFFYCSSKLLFILKKMFTREFDFISYNEVSFSSMSKLEIKNV
HHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHEEEEEE
FINSSAVIDIQHPDQTGLTMRSIEMLGLNKKLIMTNADIKNYAFYSESNVLVIDRDAPVI
EECCCEEEEEECCCCCCCCHHHHHHHCCCCEEEEECCCCCCEEEECCCCEEEEECCCCHH
SERFMSSIYLKPEQEIYDKYSLQSWICTLFDAD
HHHHHHHHCCCCHHHHHHHHHHHHHHHHEECCC
>Mature Secondary Structure
MLKNKKILFIAPSFFGYEKDITDELIALGVDVDYFDERPFTSSIAKILNRLNFKTLIKSD
CCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHH
IEKHFTQICYKATEKKYDYLFVISPETLEQKFIENIQSANESMISILYMWDSFKNKSNAK
HHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCHHHEEEEEEHHHHCCCCHHH
KVVSCFDRVFSFDPTDRISGVDIRFLALFYNNNFKSIERDKLVTTQYAVSFIGTVHSDRV
HHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
KLAKSIMKQFKDRGFNTFSFFYCSSKLLFILKKMFTREFDFISYNEVSFSSMSKLEIKNV
HHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHEEEEEE
FINSSAVIDIQHPDQTGLTMRSIEMLGLNKKLIMTNADIKNYAFYSESNVLVIDRDAPVI
EECCCEEEEEECCCCCCCCHHHHHHHCCCCEEEEECCCCCCEEEECCCCEEEEECCCCHH
SERFMSSIYLKPEQEIYDKYSLQSWICTLFDAD
HHHHHHHHCCCCHHHHHHHHHHHHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA