| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is hslO
Identifier: 209696325
GI number: 209696325
Start: 3170167
End: 3171042
Strand: Direct
Name: hslO
Synonym: VSAL_I2927
Alternate gene names: 209696325
Gene position: 3170167-3171042 (Clockwise)
Preceding gene: 209696324
Following gene: 209696326
Centisome position: 95.34
GC content: 40.98
Gene sequence:
>876_bases ATGGCAAATAACACATTGCATCGTTACCTGTTTGAAGATTTATCCGTTCGTGGTGAATTAGTTCAATTAGATGATGCTTA CCAACAAATTATTTCTAGCAAGGAATACCCAAAGCCAGTACAAAACTTATTGGGTGAGCTATTAGTTGCAACCACATTAT TAACCGCCACGTTGAAATTTGAAGGATCGATTACGCTTCAACTTCAAGGTAATGGTCCTGTCTCTCTTGTGGTTATTAAC GGCGATAACGATCAAAAAGTTCGTGGCGTTGCTCGCTTTGAAGGCGAAATTGCTGACGACGCGACATTACATCAACTAAT GGGTAAAGGTTATTTAGTTATTACTATCTCGCCTAAAGACGGCGAACGTTACCAAGGTGTTGTTGCTCTTGAAGGGAAAG ATTTAGCCGAATGTTTTGAAGGATACTTTGAGCGTTCTGAGCAATTAAAAACTCGTTTATGGTTACGTCTTGGTGAATTT GAAGGCAAACCACACGCTGCGGGTATGCTGCTTCAAGTCATGCCTGATGGGACTGGCTCTTCGGATGATTTTGAGCATTT AGAGCAACTAACGGATACCGTTAAAAACGAAGAACTCTTCAGCTTAGAAGCGGAAGATGTACTTTACCGTTTGTATAACC AAGATAAAGTTCAGTTGTTTGAACCTCAAAACGTTGAATTTTTCTGTGGGTGTTCTCGTGAACGCAGTGGCGGCGCCATC ATTACGATTGAACGTTCAGAAGTGGATGACATTATTGCAACTGAAGGCAAAGTGTCTCTTCATTGTGATTACTGTGGTAC CAGTTACGACTTTGACAGCATTGATGTTGCTCATCTTTTTGAAGAAGCCACGAAAGGTAATGACACGGTTCATTAA
Upstream 100 bases:
>100_bases GCAACAATAACTGACTTTCTTCTTTATTTACCTTTTCTCAAGGTTATAGCGGCTATAATAGCGATAACTGTAACCTCTAA TACAATTGCTGGAGTATTTC
Downstream 100 bases:
>100_bases TTCTTCATACAATTAATTCTTCATACAGAATAAGTTCTTTATTTTGTTTTAAAGCCAGCCATTAGGTTGGCTTTTTTTAT GGATTTTTTTGATGTAAAGC
Product: Hsp33-like chaperonin
Products: NA
Alternate protein names: Heat shock protein 33 homolog; HSP33
Number of amino acids: Translated: 291; Mature: 290
Protein sequence:
>291_residues MANNTLHRYLFEDLSVRGELVQLDDAYQQIISSKEYPKPVQNLLGELLVATTLLTATLKFEGSITLQLQGNGPVSLVVIN GDNDQKVRGVARFEGEIADDATLHQLMGKGYLVITISPKDGERYQGVVALEGKDLAECFEGYFERSEQLKTRLWLRLGEF EGKPHAAGMLLQVMPDGTGSSDDFEHLEQLTDTVKNEELFSLEAEDVLYRLYNQDKVQLFEPQNVEFFCGCSRERSGGAI ITIERSEVDDIIATEGKVSLHCDYCGTSYDFDSIDVAHLFEEATKGNDTVH
Sequences:
>Translated_291_residues MANNTLHRYLFEDLSVRGELVQLDDAYQQIISSKEYPKPVQNLLGELLVATTLLTATLKFEGSITLQLQGNGPVSLVVIN GDNDQKVRGVARFEGEIADDATLHQLMGKGYLVITISPKDGERYQGVVALEGKDLAECFEGYFERSEQLKTRLWLRLGEF EGKPHAAGMLLQVMPDGTGSSDDFEHLEQLTDTVKNEELFSLEAEDVLYRLYNQDKVQLFEPQNVEFFCGCSRERSGGAI ITIERSEVDDIIATEGKVSLHCDYCGTSYDFDSIDVAHLFEEATKGNDTVH >Mature_290_residues ANNTLHRYLFEDLSVRGELVQLDDAYQQIISSKEYPKPVQNLLGELLVATTLLTATLKFEGSITLQLQGNGPVSLVVING DNDQKVRGVARFEGEIADDATLHQLMGKGYLVITISPKDGERYQGVVALEGKDLAECFEGYFERSEQLKTRLWLRLGEFE GKPHAAGMLLQVMPDGTGSSDDFEHLEQLTDTVKNEELFSLEAEDVLYRLYNQDKVQLFEPQNVEFFCGCSRERSGGAII TIERSEVDDIIATEGKVSLHCDYCGTSYDFDSIDVAHLFEEATKGNDTVH
Specific function: Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
COG id: COG1281
COG function: function code O; Disulfide bond chaperones of the HSP33 family
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HSP33 family
Homologues:
Organism=Escherichia coli, GI87082260, Length=289, Percent_Identity=56.0553633217993, Blast_Score=355, Evalue=2e-99,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): HSLO_ALISL (B6EGP6)
Other databases:
- EMBL: FM178379 - RefSeq: YP_002264256.1 - ProteinModelPortal: B6EGP6 - GeneID: 6988685 - GenomeReviews: FM178379_GR - KEGG: vsa:VSAL_I2927 - HOGENOM: HBG296531 - OMA: AMTIDQG - ProtClustDB: PRK00114 - GO: GO:0005737 - HAMAP: MF_00117 - InterPro: IPR000397 - InterPro: IPR016154 - InterPro: IPR016153 - InterPro: IPR023212 - Gene3D: G3DSA:1.10.287.480 - Gene3D: G3DSA:3.90.1280.10 - Gene3D: G3DSA:3.55.30.10 - PIRSF: PIRSF005261
Pfam domain/function: PF01430 HSP33; SSF64397 Heat_shock_Hsp33_N
EC number: NA
Molecular weight: Translated: 32499; Mature: 32368
Theoretical pI: Translated: 4.25; Mature: 4.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANNTLHRYLFEDLSVRGELVQLDDAYQQIISSKEYPKPVQNLLGELLVATTLLTATLKF CCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEEEE EGSITLQLQGNGPVSLVVINGDNDQKVRGVARFEGEIADDATLHQLMGKGYLVITISPKD CCEEEEEEECCCCEEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHCCCEEEEEEECCC GERYQGVVALEGKDLAECFEGYFERSEQLKTRLWLRLGEFEGKPHAAGMLLQVMPDGTGS CCHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC SDDFEHLEQLTDTVKNEELFSLEAEDVLYRLYNQDKVQLFEPQNVEFFCGCSRERSGGAI CHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCEEEECCCCCEEEEECCCCCCCCEE ITIERSEVDDIIATEGKVSLHCDYCGTSYDFDSIDVAHLFEEATKGNDTVH EEEECCCCCHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCC >Mature Secondary Structure ANNTLHRYLFEDLSVRGELVQLDDAYQQIISSKEYPKPVQNLLGELLVATTLLTATLKF CCCHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEEEE EGSITLQLQGNGPVSLVVINGDNDQKVRGVARFEGEIADDATLHQLMGKGYLVITISPKD CCEEEEEEECCCCEEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHCCCEEEEEEECCC GERYQGVVALEGKDLAECFEGYFERSEQLKTRLWLRLGEFEGKPHAAGMLLQVMPDGTGS CCHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC SDDFEHLEQLTDTVKNEELFSLEAEDVLYRLYNQDKVQLFEPQNVEFFCGCSRERSGGAI CHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCEEEECCCCCEEEEECCCCCCCCEE ITIERSEVDDIIATEGKVSLHCDYCGTSYDFDSIDVAHLFEEATKGNDTVH EEEECCCCCHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA