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The map label for this gene is epsC [H]

Identifier: 209696323

GI number: 209696323

Start: 3168486

End: 3169397

Strand: Reverse

Name: epsC [H]

Synonym: VSAL_I2925

Alternate gene names: 209696323

Gene position: 3169397-3168486 (Counterclockwise)

Preceding gene: 209696328

Following gene: 209696322

Centisome position: 95.32

GC content: 39.36

Gene sequence:

>912_bases
ATGGTAACAAATATGAAAATCGATAAATTCCCTCAATATTGGTTAATCTATCAATCGACTATTTCAAAAGGATTAACGGT
TATCTTAGTTGCCTGGTTTGCATGGATTTGTGGATCATTATTTTGGGCAATGTTGTCACCGCAGACGTCGGTTTCAAAAT
GGTCTCCTTCAACGGTTGCAGCGCATTCTTCAAAGCCGAAAACATCGACAGACTCATTATCTGAATTGCTTAATAGCCAA
GTCTTTGGGCGTTATAGCGAAGAGGCTAAAAAGTCAGAACAACCTAAGATTACTGAGGTCAAAGATGCGCCTAAAACGCA
GTTAAATTTGACGCTAGCAGGCATTGTGGCGAGCAGTAACCCTAAATTTAGTCTTGCTGTTATTGCTAATCGCGGACAGC
AAAATACCTATGGAATTGAAGAAACAATTGATGGTACACGAGCAACGGTAAAGGCGATTAGCCCTGATCGTATCATTATT
TCAAATAATGGTCGTGATGAAACGCTAATGCTTGAAGGGCTTGAGTACACCAAAATCTCGACAGAAAAAAATCACACCGG
TAGCTCAGGCACTGTGATCGGAAATAACCGTCAAAATTCAAATCAAGATGAATTAGAACAAATTCGTAAGGAAATGGCTC
AAAACCCACAATCAGTGCTGAAGTACATTCGTCTTTCTCAAGTGAGTAATGATGGAAAAATTGAAGGGTATCGAGTGAAT
CCAGGTAAAGACAGAAAACTGTTTGATTCTGTTGGTTTAAAGCCTGGAGACATTGCAACCAGTTTAAATGGGATTGATTT
AACCGATCCTGCGGCAATGAGTTCATTGTGGAAAAACATGTCAGAAATGACGGAATTAAATTTAACGGTTCAGCGTGATG
GACAGTTACATGACATCTTTATCGGTCTATAA

Upstream 100 bases:

>100_bases
AAAGGTAATGCCTACAGTAATTGTGGCTCTTTATTTTATAATTATAAAATGCATCAAATAATTAAAGAAGATCATTTAAG
AAAAGGATAATCAAAAGCAG

Downstream 100 bases:

>100_bases
AAACTGGTAATTAATGAATTAAGGGTATGTTGTGAAAAAGTGGATGGGCAAGGGAGCCTTATTACTGGCGAGTAGCATGG
TGTGGACATCAGCTATCGCC

Product: general secretion pathway protein C

Products: NA

Alternate protein names: Cholera toxin secretion protein epsC [H]

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MVTNMKIDKFPQYWLIYQSTISKGLTVILVAWFAWICGSLFWAMLSPQTSVSKWSPSTVAAHSSKPKTSTDSLSELLNSQ
VFGRYSEEAKKSEQPKITEVKDAPKTQLNLTLAGIVASSNPKFSLAVIANRGQQNTYGIEETIDGTRATVKAISPDRIII
SNNGRDETLMLEGLEYTKISTEKNHTGSSGTVIGNNRQNSNQDELEQIRKEMAQNPQSVLKYIRLSQVSNDGKIEGYRVN
PGKDRKLFDSVGLKPGDIATSLNGIDLTDPAAMSSLWKNMSEMTELNLTVQRDGQLHDIFIGL

Sequences:

>Translated_303_residues
MVTNMKIDKFPQYWLIYQSTISKGLTVILVAWFAWICGSLFWAMLSPQTSVSKWSPSTVAAHSSKPKTSTDSLSELLNSQ
VFGRYSEEAKKSEQPKITEVKDAPKTQLNLTLAGIVASSNPKFSLAVIANRGQQNTYGIEETIDGTRATVKAISPDRIII
SNNGRDETLMLEGLEYTKISTEKNHTGSSGTVIGNNRQNSNQDELEQIRKEMAQNPQSVLKYIRLSQVSNDGKIEGYRVN
PGKDRKLFDSVGLKPGDIATSLNGIDLTDPAAMSSLWKNMSEMTELNLTVQRDGQLHDIFIGL
>Mature_303_residues
MVTNMKIDKFPQYWLIYQSTISKGLTVILVAWFAWICGSLFWAMLSPQTSVSKWSPSTVAAHSSKPKTSTDSLSELLNSQ
VFGRYSEEAKKSEQPKITEVKDAPKTQLNLTLAGIVASSNPKFSLAVIANRGQQNTYGIEETIDGTRATVKAISPDRIII
SNNGRDETLMLEGLEYTKISTEKNHTGSSGTVIGNNRQNSNQDELEQIRKEMAQNPQSVLKYIRLSQVSNDGKIEGYRVN
PGKDRKLFDSVGLKPGDIATSLNGIDLTDPAAMSSLWKNMSEMTELNLTVQRDGQLHDIFIGL

Specific function: Required for secretion of cholera toxin through the outer membrane [H]

COG id: COG3031

COG function: function code U; Type II secretory pathway, component PulC

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP C family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001639 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33507; Mature: 33507

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTNMKIDKFPQYWLIYQSTISKGLTVILVAWFAWICGSLFWAMLSPQTSVSKWSPSTVA
CCCCCCCCCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
AHSSKPKTSTDSLSELLNSQVFGRYSEEAKKSEQPKITEVKDAPKTQLNLTLAGIVASSN
ECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCC
PKFSLAVIANRGQQNTYGIEETIDGTRATVKAISPDRIIISNNGRDETLMLEGLEYTKIS
CCEEEEEEECCCCCCCCCHHHHCCCCCEEEEECCCCEEEEECCCCCCEEEEECCEEEEEC
TEKNHTGSSGTVIGNNRQNSNQDELEQIRKEMAQNPQSVLKYIRLSQVSNDGKIEGYRVN
CCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEEC
PGKDRKLFDSVGLKPGDIATSLNGIDLTDPAAMSSLWKNMSEMTELNLTVQRDGQLHDIF
CCCCCHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEECCCCEEEEE
IGL
EEC
>Mature Secondary Structure
MVTNMKIDKFPQYWLIYQSTISKGLTVILVAWFAWICGSLFWAMLSPQTSVSKWSPSTVA
CCCCCCCCCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
AHSSKPKTSTDSLSELLNSQVFGRYSEEAKKSEQPKITEVKDAPKTQLNLTLAGIVASSN
ECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCC
PKFSLAVIANRGQQNTYGIEETIDGTRATVKAISPDRIIISNNGRDETLMLEGLEYTKIS
CCEEEEEEECCCCCCCCCHHHHCCCCCEEEEECCCCEEEEECCCCCCEEEEECCEEEEEC
TEKNHTGSSGTVIGNNRQNSNQDELEQIRKEMAQNPQSVLKYIRLSQVSNDGKIEGYRVN
CCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEEC
PGKDRKLFDSVGLKPGDIATSLNGIDLTDPAAMSSLWKNMSEMTELNLTVQRDGQLHDIF
CCCCCHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEECCCCEEEEE
IGL
EEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]