| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209696235
Identifier: 209696235
GI number: 209696235
Start: 3068890
End: 3070722
Strand: Direct
Name: 209696235
Synonym: VSAL_I2831
Alternate gene names: NA
Gene position: 3068890-3070722 (Clockwise)
Preceding gene: 209696232
Following gene: 209696236
Centisome position: 92.29
GC content: 38.46
Gene sequence:
>1833_bases ATGCCAAACAATATTGATCTCACCATTGCACCCTTCAATAAATTAAACGACAGACAGAAAAAGACGTTAATTAATCATCT TGATATTGCGTATTTTCGGCATGGCGACACGTTACTTTATCAAGGTCAGCCTTCTGAACATCTTTTCATTATCATTAAGG GCATTGTTGAAGAACGATCCAGCAGTAATGGAGAAATTTACGCTCATTATACGAATGACGATATTTTTGACGTACGATCT CAACTCGAACAACCCGTAAAACATACTTATCAAGCCATTGAAGATACCTTGTGCCACCTGCTGCCTACCGCCATTTTCCT TACTCTTTATCATGAAAACACAGAGTTCGCCGCTTATTTCAATAGCAGTTTGGCCACACGAAAAGCGTTAATGACACAAG CTCATCAACAGCAAAACTTAGCGGAGTTTATTCTCACCAAAATAGATAACGAAACCATTCAACCCAGTTTAGTTGTTGAT TGGAATACCTCATTACAACAAGTCACTCAATTATTAAAAGACAAGGCAGTGGATGCATTATTTGTTGAACTAAACCAATA CGATACTCGCCATAAATCGAATACTGCGCATTTACCGATTGGGATAATTACTCGAACAGATTTACTGCACGCTCTTATGC TCGAAGGCTATTCTCCTAATCATCCGGTAGGTCCAATAACCACTTACCCGATAGTAAGTATCAAAAAATACGATTATTTG TTCAATGCCATGACACTAATGACCCGCCACCACGTGAAACGAGTGGCGGTTATTGAAGAAAATAAATTGATCGGTATGTT AGATATGACTCAAATATTGAGCTTATTTTCCACCCACTACCATGTACTCACATTGAGAATTGCTCGAGCACAAACCATTG ATGAACTCGCTTTGGCGGCCAACAGCCAAGCACAGTTAGTTGAAACGCTTCTTAACAATGGAATTCGTACCCGTTTTATT ATGGAATTGATTTCTACCATTAATGAACAAATTATAGAAAAAGCATTTAATCTCACCGTGCCTAAAGCTCTGCATGATCA TTGCTGCTTGATCGTGATGGGATCAGAAGGAAGAGGCGAACAAATTCTTAAAACCGATCAAGACAATGCCTTAATCATTA AAGAAGGATTAAAGTGGCATCAATGCCATGAACTGATGAAGAAGTTCACTCACACCCTGCTGCAGCTAGGCTATCCATTA TGCAAAGGGAATATCATGGTCAGCAATGCGCATTGGGTAAAAACTGAACGTGAATGGCAACATTACATCACCAAATTAAG CACCGAATATAACGGTGAAAACATGATGCACCTTGCTATTTTATCGGATGCTCATGCCGTTGCGGGAAATCACCAATTAC TTTCTCCTCTAAAACATTTATTAACTCAGAAGATGCAAGAAAATGAGCTCGCACTCAGTATCTTTGCCAGCCCTGCATTG CAATTTATTGTGCCATTAACTCTATTCGGAAAAGTAAAAAACAAAAAAGAAGGCATTGATATTAAACAAGGTGGCATTTT CCCTATCGTTCACGGAATTCGAACTCTCAGCTTAGAACATGGTATTACCGACACAAACACATTTACTCGTATTGAACTTC TTTGCCAACAGAACATCCTTGAATCCACAACAGCAGAAAATTTGAGTGAAGCTCTAAAGCTATTTTTTAAATTACGCTTA CGCCACCAGTTAGAAGAAGTAAACCCAATGCCCAGTAATCAAATTCACATTCAACGATTAGATAGAAGTGAACGTGATTT ACTTCGCCACAGTTTACACATCGTTAAAAAATTCAAAGAATGGCTTGGTTATCATTACCAAATTAGGGATTAA
Upstream 100 bases:
>100_bases AAACCCGAGATTTTAGAACTTTATGGGTAGACTAAAGTCGTCTTCATACTGTGCCTTTTTTTAGCCAAAATAGTAAAAAG GAACGCACAGAGGATGGGTT
Downstream 100 bases:
>100_bases CATGAATCAACTTCAACGCCTATGGTGGCGCTATAAACTACGAAACCACTCGAATCACTTTCTTTTTGAACGCTACAACG GCGAAGAATTGGTTTCTATT
Product: nucleotidyltransferases
Products: NA
Alternate protein names: Signal-Transduction Protein; Nucleotidyltransferase; Signal Transduction Protein; Signal Transduction Protein With CBS Domains; Signal-Transduction Protein With CBS Domains; Nucleotidyltransferase Family; CBS Domain Protein; Signal Protein; Inosine-5-Monophosphate Dehydrogenase; DNA Polymerase III Subunit Epsilon; CBS Signal-Transduction Protein; Multidomain-Containing Protein; Nucleotidyltransferase Domain Family Protein; Cyclic Nucleotide-Regulated Nucleotidyltransferase; Nucleotidyltransferases
Number of amino acids: Translated: 610; Mature: 609
Protein sequence:
>610_residues MPNNIDLTIAPFNKLNDRQKKTLINHLDIAYFRHGDTLLYQGQPSEHLFIIIKGIVEERSSSNGEIYAHYTNDDIFDVRS QLEQPVKHTYQAIEDTLCHLLPTAIFLTLYHENTEFAAYFNSSLATRKALMTQAHQQQNLAEFILTKIDNETIQPSLVVD WNTSLQQVTQLLKDKAVDALFVELNQYDTRHKSNTAHLPIGIITRTDLLHALMLEGYSPNHPVGPITTYPIVSIKKYDYL FNAMTLMTRHHVKRVAVIEENKLIGMLDMTQILSLFSTHYHVLTLRIARAQTIDELALAANSQAQLVETLLNNGIRTRFI MELISTINEQIIEKAFNLTVPKALHDHCCLIVMGSEGRGEQILKTDQDNALIIKEGLKWHQCHELMKKFTHTLLQLGYPL CKGNIMVSNAHWVKTEREWQHYITKLSTEYNGENMMHLAILSDAHAVAGNHQLLSPLKHLLTQKMQENELALSIFASPAL QFIVPLTLFGKVKNKKEGIDIKQGGIFPIVHGIRTLSLEHGITDTNTFTRIELLCQQNILESTTAENLSEALKLFFKLRL RHQLEEVNPMPSNQIHIQRLDRSERDLLRHSLHIVKKFKEWLGYHYQIRD
Sequences:
>Translated_610_residues MPNNIDLTIAPFNKLNDRQKKTLINHLDIAYFRHGDTLLYQGQPSEHLFIIIKGIVEERSSSNGEIYAHYTNDDIFDVRS QLEQPVKHTYQAIEDTLCHLLPTAIFLTLYHENTEFAAYFNSSLATRKALMTQAHQQQNLAEFILTKIDNETIQPSLVVD WNTSLQQVTQLLKDKAVDALFVELNQYDTRHKSNTAHLPIGIITRTDLLHALMLEGYSPNHPVGPITTYPIVSIKKYDYL FNAMTLMTRHHVKRVAVIEENKLIGMLDMTQILSLFSTHYHVLTLRIARAQTIDELALAANSQAQLVETLLNNGIRTRFI MELISTINEQIIEKAFNLTVPKALHDHCCLIVMGSEGRGEQILKTDQDNALIIKEGLKWHQCHELMKKFTHTLLQLGYPL CKGNIMVSNAHWVKTEREWQHYITKLSTEYNGENMMHLAILSDAHAVAGNHQLLSPLKHLLTQKMQENELALSIFASPAL QFIVPLTLFGKVKNKKEGIDIKQGGIFPIVHGIRTLSLEHGITDTNTFTRIELLCQQNILESTTAENLSEALKLFFKLRL RHQLEEVNPMPSNQIHIQRLDRSERDLLRHSLHIVKKFKEWLGYHYQIRD >Mature_609_residues PNNIDLTIAPFNKLNDRQKKTLINHLDIAYFRHGDTLLYQGQPSEHLFIIIKGIVEERSSSNGEIYAHYTNDDIFDVRSQ LEQPVKHTYQAIEDTLCHLLPTAIFLTLYHENTEFAAYFNSSLATRKALMTQAHQQQNLAEFILTKIDNETIQPSLVVDW NTSLQQVTQLLKDKAVDALFVELNQYDTRHKSNTAHLPIGIITRTDLLHALMLEGYSPNHPVGPITTYPIVSIKKYDYLF NAMTLMTRHHVKRVAVIEENKLIGMLDMTQILSLFSTHYHVLTLRIARAQTIDELALAANSQAQLVETLLNNGIRTRFIM ELISTINEQIIEKAFNLTVPKALHDHCCLIVMGSEGRGEQILKTDQDNALIIKEGLKWHQCHELMKKFTHTLLQLGYPLC KGNIMVSNAHWVKTEREWQHYITKLSTEYNGENMMHLAILSDAHAVAGNHQLLSPLKHLLTQKMQENELALSIFASPALQ FIVPLTLFGKVKNKKEGIDIKQGGIFPIVHGIRTLSLEHGITDTNTFTRIELLCQQNILESTTAENLSEALKLFFKLRLR HQLEEVNPMPSNQIHIQRLDRSERDLLRHSLHIVKKFKEWLGYHYQIRD
Specific function: Unknown
COG id: COG2905
COG function: function code T; Predicted signal-transduction protein containing cAMP-binding and CBS domains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 70076; Mature: 69945
Theoretical pI: Translated: 7.23; Mature: 7.23
Prosite motif: PS50042 CNMP_BINDING_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNNIDLTIAPFNKLNDRQKKTLINHLDIAYFRHGDTLLYQGQPSEHLFIIIKGIVEERS CCCCCEEEEECCHHCCHHHHHHHHHHHHEEEEECCCEEEECCCCCCEEEEEEEHHHHHCC SSNGEIYAHYTNDDIFDVRSQLEQPVKHTYQAIEDTLCHLLPTAIFLTLYHENTEFAAYF CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEHH NSSLATRKALMTQAHQQQNLAEFILTKIDNETIQPSLVVDWNTSLQQVTQLLKDKAVDAL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCHHHE FVELNQYDTRHKSNTAHLPIGIITRTDLLHALMLEGYSPNHPVGPITTYPIVSIKKYDYL EEEHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHH FNAMTLMTRHHVKRVAVIEENKLIGMLDMTQILSLFSTHYHVLTLRIARAQTIDELALAA HHHHHHHHHHHHHHEEEEECCCEEEHHHHHHHHHHHHCCHHEEEEEHHHHHHHHHHHHHC NSQAQLVETLLNNGIRTRFIMELISTINEQIIEKAFNLTVPKALHDHCCLIVMGSEGRGE CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCEEEEEECCCCCCC QILKTDQDNALIIKEGLKWHQCHELMKKFTHTLLQLGYPLCKGNIMVSNAHWVKTEREWQ CCEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEECCCEEEECCEEECCHHHHH HYITKLSTEYNGENMMHLAILSDAHAVAGNHQLLSPLKHLLTQKMQENELALSIFASPAL HHHHHHHCCCCCCCEEEEEEECCCHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEHHHHHH QFIVPLTLFGKVKNKKEGIDIKQGGIFPIVHGIRTLSLEHGITDTNTFTRIELLCQQNIL HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH ESTTAENLSEALKLFFKLRLRHQLEEVNPMPSNQIHIQRLDRSERDLLRHSLHIVKKFKE HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHH WLGYHYQIRD HCCCEEEECC >Mature Secondary Structure PNNIDLTIAPFNKLNDRQKKTLINHLDIAYFRHGDTLLYQGQPSEHLFIIIKGIVEERS CCCCEEEEECCHHCCHHHHHHHHHHHHEEEEECCCEEEECCCCCCEEEEEEEHHHHHCC SSNGEIYAHYTNDDIFDVRSQLEQPVKHTYQAIEDTLCHLLPTAIFLTLYHENTEFAAYF CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEHH NSSLATRKALMTQAHQQQNLAEFILTKIDNETIQPSLVVDWNTSLQQVTQLLKDKAVDAL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCHHHE FVELNQYDTRHKSNTAHLPIGIITRTDLLHALMLEGYSPNHPVGPITTYPIVSIKKYDYL EEEHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHH FNAMTLMTRHHVKRVAVIEENKLIGMLDMTQILSLFSTHYHVLTLRIARAQTIDELALAA HHHHHHHHHHHHHHEEEEECCCEEEHHHHHHHHHHHHCCHHEEEEEHHHHHHHHHHHHHC NSQAQLVETLLNNGIRTRFIMELISTINEQIIEKAFNLTVPKALHDHCCLIVMGSEGRGE CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCEEEEEECCCCCCC QILKTDQDNALIIKEGLKWHQCHELMKKFTHTLLQLGYPLCKGNIMVSNAHWVKTEREWQ CCEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEECCCEEEECCEEECCHHHHH HYITKLSTEYNGENMMHLAILSDAHAVAGNHQLLSPLKHLLTQKMQENELALSIFASPAL HHHHHHHCCCCCCCEEEEEEECCCHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEHHHHHH QFIVPLTLFGKVKNKKEGIDIKQGGIFPIVHGIRTLSLEHGITDTNTFTRIELLCQQNIL HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH ESTTAENLSEALKLFFKLRLRHQLEEVNPMPSNQIHIQRLDRSERDLLRHSLHIVKKFKE HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHH WLGYHYQIRD HCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA