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The map label for this gene is 209696236

Identifier: 209696236

GI number: 209696236

Start: 3070724

End: 3071356

Strand: Direct

Name: 209696236

Synonym: VSAL_I2832

Alternate gene names: NA

Gene position: 3070724-3071356 (Clockwise)

Preceding gene: 209696235

Following gene: 209696237

Centisome position: 92.35

GC content: 40.92

Gene sequence:

>633_bases
ATGAATCAACTTCAACGCCTATGGTGGCGCTATAAACTACGAAACCACTCGAATCACTTTCTTTTTGAACGCTACAACGG
CGAAGAATTGGTTTCTATTGATTGCGAAACAACAAGTCTTGACCCTAATCATGCGGAATTAGTGTCGATCGCGGCCATAA
AAATAAAACAGAACAGAGTATTAACAAGCCAAACGATTCATCTCAAATTAAGACCACCACACAACCTAACGTCAGAATCA
GTCAAAATACATCAACTAAGGCATCACGATCTCTCTCATGGACTGTCCGAAAAAGACGCTATCATTCAATTACTTCAATT
TATTGGTAATCGACCGATTGTCGGCTACCACATTCACTACGACAAAAAGATTTTAGACCGCAGTTGCTTACGTCACTGTG
GTCACCCTTTTCCTAATAGGCTAATCGAAGTCTGCCATATTTATCACCATAAATTAGAGTGCCTATTACCTAATGCGTAT
TACGATTTAAGCATTGAGGCCATCTCTACCCATTTAGATCTACCACAAGCCGAACGTCATGATGCTTTGCAAGATGCCAT
TGCCGCAGCATTGATTTATGTTCGTCTTCATTATGGTGATTTCCCTGAACTGCCTACCCCAAGAGCGCTTTAA

Upstream 100 bases:

>100_bases
CGATTAGATAGAAGTGAACGTGATTTACTTCGCCACAGTTTACACATCGTTAAAAAATTCAAAGAATGGCTTGGTTATCA
TTACCAAATTAGGGATTAAC

Downstream 100 bases:

>100_bases
TTCACAACTTACTGATCTGTGTCTCAAAACGCTCTTCTCTTTTCCTCTCAAATTCAGTCATTTCCTCTTTCTCTGACTAA
AGTCTAATTGTTGAAAATCG

Product: DNA polymerase III subunit epsilon

Products: NA

Alternate protein names: Exonuclease RNAse T And DNA Polymerase III; DNA Polymerase III Epsilon Subunit; Exonuclease RNAase T And DNA Polymerase III; DNA Polymerase IIIsubunit Epsilon; Exonuclease Superfamily; Exonuclease

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MNQLQRLWWRYKLRNHSNHFLFERYNGEELVSIDCETTSLDPNHAELVSIAAIKIKQNRVLTSQTIHLKLRPPHNLTSES
VKIHQLRHHDLSHGLSEKDAIIQLLQFIGNRPIVGYHIHYDKKILDRSCLRHCGHPFPNRLIEVCHIYHHKLECLLPNAY
YDLSIEAISTHLDLPQAERHDALQDAIAAALIYVRLHYGDFPELPTPRAL

Sequences:

>Translated_210_residues
MNQLQRLWWRYKLRNHSNHFLFERYNGEELVSIDCETTSLDPNHAELVSIAAIKIKQNRVLTSQTIHLKLRPPHNLTSES
VKIHQLRHHDLSHGLSEKDAIIQLLQFIGNRPIVGYHIHYDKKILDRSCLRHCGHPFPNRLIEVCHIYHHKLECLLPNAY
YDLSIEAISTHLDLPQAERHDALQDAIAAALIYVRLHYGDFPELPTPRAL
>Mature_210_residues
MNQLQRLWWRYKLRNHSNHFLFERYNGEELVSIDCETTSLDPNHAELVSIAAIKIKQNRVLTSQTIHLKLRPPHNLTSES
VKIHQLRHHDLSHGLSEKDAIIQLLQFIGNRPIVGYHIHYDKKILDRSCLRHCGHPFPNRLIEVCHIYHHKLECLLPNAY
YDLSIEAISTHLDLPQAERHDALQDAIAAALIYVRLHYGDFPELPTPRAL

Specific function: Unknown

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24510; Mature: 24510

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: PS00028 ZINC_FINGER_C2H2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQLQRLWWRYKLRNHSNHFLFERYNGEELVSIDCETTSLDPNHAELVSIAAIKIKQNRV
CCHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCCCCCCHHHHEEEEEEEEECCEE
LTSQTIHLKLRPPHNLTSESVKIHQLRHHDLSHGLSEKDAIIQLLQFIGNRPIVGYHIHY
EEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEC
DKKILDRSCLRHCGHPFPNRLIEVCHIYHHKLECLLPNAYYDLSIEAISTHLDLPQAERH
CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCCCEEEEEHEEHHHHCCCCCHHHH
DALQDAIAAALIYVRLHYGDFPELPTPRAL
HHHHHHHHHHHHHHHEECCCCCCCCCCCCC
>Mature Secondary Structure
MNQLQRLWWRYKLRNHSNHFLFERYNGEELVSIDCETTSLDPNHAELVSIAAIKIKQNRV
CCHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCCCCCCHHHHEEEEEEEEECCEE
LTSQTIHLKLRPPHNLTSESVKIHQLRHHDLSHGLSEKDAIIQLLQFIGNRPIVGYHIHY
EEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEC
DKKILDRSCLRHCGHPFPNRLIEVCHIYHHKLECLLPNAYYDLSIEAISTHLDLPQAERH
CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEECCCCEEEEEHEEHHHHCCCCCHHHH
DALQDAIAAALIYVRLHYGDFPELPTPRAL
HHHHHHHHHHHHHHHEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA