| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is maeB [H]
Identifier: 209696151
GI number: 209696151
Start: 2971385
End: 2972632
Strand: Direct
Name: maeB [H]
Synonym: VSAL_I2745
Alternate gene names: 209696151
Gene position: 2971385-2972632 (Clockwise)
Preceding gene: 209696150
Following gene: 209696153
Centisome position: 89.36
GC content: 42.39
Gene sequence:
>1248_bases ATGTCTGAAGATTTTCGCGAACAAGCTCTCCATTATCACGCTTACCCAACGCCGGGTAAAATTGAAATAGCACTGACTAA ACCCGCCGATACGGTAGAAGACCTTGCTTTGGCTTATAGCCCAGGAGTAGCTGAACCAGTACGTGAAATCGCGAAAAACC CAGACGATGTTTATAAATACACGTCTAAAGGCAATATGGTTGCGGTTATTTCAAATGGTACGGCTATTTTAGGCTTAGGT AATTTAGGTCCTCTGGCTTCAAAACCTGTAATGGAAGGCAAATCATTACTTTTCAAACGATTTGCCGGTCTAGATTCGAT TGATATCGAAGTGAAACATCGCACTATTGATGAATTTGTAGATACAGTGGCGAACATTGCAGATACTTTTGGTGGTATTA ATTTAGAAGACATCAAAGCCCCTGATTGTTTTGAAATTGAACGTCGTTTAATTGAACGTTGTGATATTCCTGTATTCCAC GATGATCAGCACGGTACTGCAATTGTAACGGCAGCGGGCATGTTGAATGCTATCGAGCTTCAAGGTAAGAAGTTAGAAGA CGCGATCATTGTTTGTTTAGGTGCGGGTGCCGCGGCGGTTGCCTGCATGGAAATGCTGATTAAATGTGGCGCGATGCGCG AGAAGATCTACATGCTTGATCGTAAAGGCGTAATTCACACTCGTCGTGATGACATTAATGAATATAAACAACGTTTTGCG AACAACACAGATAAACGTACGCTTGAAGATGTTATTGAAGGCGCTGATTTATTCTTAGGGGTATCGGGTCCTAACCTATT GCCACCTGAAGCGCTTAAATTAATGGCTGATAAGCCCGTTGTATTTGCTTGTTCAAATCCAGATCCTGAGATCAAACCAG AATTGGCTCATGAAGTTCGTAATGATTTAATTATGGGTACTGGTCGTTCTGATTATCCTAACCAAGTAAATAACGTACTT TGTTTCCCATTTATCTTCCGTGGTGCACTCGATGTTCGTGCAAGCGTGATTAATGATGAAATGAAATTGGCTGCGGTTGA AGCAATTCGTCAATTAACGAAAGAACCTGTGCCTGTCGAAGTATTAAAAGCGGCGGGTGTTGATTCTTTAGAGTTTGGCA AAGGTTACATCATTCCTAAACCGATGGATCCTCGTTTACTTCCTCGAGTTGCAAAAGCGGTAGCACAAGCCGCGGTTGAT TCAGGTGTCGCTCGTATTGAAATGCCAGAAGGATACATGGAAGCGTAA
Upstream 100 bases:
>100_bases TCTGTAAGCGAAGACTATGAAGTTTGAGCTAGATCAACTATTATATAGTTTACTATTTTGAAACAATTCTCTTATATTTA TTAGCATTCAGGAAAACCCC
Downstream 100 bases:
>100_bases ACTGCTTTTATATATTAATTAAAGTAAAAAGGCTTCCTACGTCATTGATGAGGAAGCCTTTTTATTAGAGGGAATTAAAT TATGGGTTTACCACCAAACG
Product: NADP-dependent malic enzyme
Products: NA
Alternate protein names: NADP-ME [H]
Number of amino acids: Translated: 415; Mature: 414
Protein sequence:
>415_residues MSEDFREQALHYHAYPTPGKIEIALTKPADTVEDLALAYSPGVAEPVREIAKNPDDVYKYTSKGNMVAVISNGTAILGLG NLGPLASKPVMEGKSLLFKRFAGLDSIDIEVKHRTIDEFVDTVANIADTFGGINLEDIKAPDCFEIERRLIERCDIPVFH DDQHGTAIVTAAGMLNAIELQGKKLEDAIIVCLGAGAAAVACMEMLIKCGAMREKIYMLDRKGVIHTRRDDINEYKQRFA NNTDKRTLEDVIEGADLFLGVSGPNLLPPEALKLMADKPVVFACSNPDPEIKPELAHEVRNDLIMGTGRSDYPNQVNNVL CFPFIFRGALDVRASVINDEMKLAAVEAIRQLTKEPVPVEVLKAAGVDSLEFGKGYIIPKPMDPRLLPRVAKAVAQAAVD SGVARIEMPEGYMEA
Sequences:
>Translated_415_residues MSEDFREQALHYHAYPTPGKIEIALTKPADTVEDLALAYSPGVAEPVREIAKNPDDVYKYTSKGNMVAVISNGTAILGLG NLGPLASKPVMEGKSLLFKRFAGLDSIDIEVKHRTIDEFVDTVANIADTFGGINLEDIKAPDCFEIERRLIERCDIPVFH DDQHGTAIVTAAGMLNAIELQGKKLEDAIIVCLGAGAAAVACMEMLIKCGAMREKIYMLDRKGVIHTRRDDINEYKQRFA NNTDKRTLEDVIEGADLFLGVSGPNLLPPEALKLMADKPVVFACSNPDPEIKPELAHEVRNDLIMGTGRSDYPNQVNNVL CFPFIFRGALDVRASVINDEMKLAAVEAIRQLTKEPVPVEVLKAAGVDSLEFGKGYIIPKPMDPRLLPRVAKAVAQAAVD SGVARIEMPEGYMEA >Mature_414_residues SEDFREQALHYHAYPTPGKIEIALTKPADTVEDLALAYSPGVAEPVREIAKNPDDVYKYTSKGNMVAVISNGTAILGLGN LGPLASKPVMEGKSLLFKRFAGLDSIDIEVKHRTIDEFVDTVANIADTFGGINLEDIKAPDCFEIERRLIERCDIPVFHD DQHGTAIVTAAGMLNAIELQGKKLEDAIIVCLGAGAAAVACMEMLIKCGAMREKIYMLDRKGVIHTRRDDINEYKQRFAN NTDKRTLEDVIEGADLFLGVSGPNLLPPEALKLMADKPVVFACSNPDPEIKPELAHEVRNDLIMGTGRSDYPNQVNNVLC FPFIFRGALDVRASVINDEMKLAAVEAIRQLTKEPVPVEVLKAAGVDSLEFGKGYIIPKPMDPRLLPRVAKAVAQAAVDS GVARIEMPEGYMEA
Specific function: Unknown
COG id: COG0281
COG function: function code C; Malic enzyme
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the phosphate acetyltransferase and butyryltransferase family [H]
Homologues:
Organism=Homo sapiens, GI4505143, Length=357, Percent_Identity=26.0504201680672, Blast_Score=89, Evalue=7e-18, Organism=Homo sapiens, GI62420882, Length=351, Percent_Identity=28.7749287749288, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI62420880, Length=351, Percent_Identity=28.7749287749288, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI239049447, Length=351, Percent_Identity=28.7749287749288, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI4505145, Length=351, Percent_Identity=27.9202279202279, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI270265879, Length=317, Percent_Identity=27.7602523659306, Blast_Score=68, Evalue=1e-11, Organism=Escherichia coli, GI1788806, Length=406, Percent_Identity=58.3743842364532, Blast_Score=466, Evalue=1e-132, Organism=Escherichia coli, GI87081919, Length=515, Percent_Identity=24.4660194174757, Blast_Score=87, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17537199, Length=414, Percent_Identity=25.8454106280193, Blast_Score=75, Evalue=6e-14, Organism=Saccharomyces cerevisiae, GI6322823, Length=308, Percent_Identity=25.974025974026, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI78707242, Length=342, Percent_Identity=26.9005847953216, Blast_Score=89, Evalue=6e-18, Organism=Drosophila melanogaster, GI78707238, Length=342, Percent_Identity=26.9005847953216, Blast_Score=89, Evalue=6e-18, Organism=Drosophila melanogaster, GI281362674, Length=456, Percent_Identity=25.219298245614, Blast_Score=88, Evalue=8e-18, Organism=Drosophila melanogaster, GI78707240, Length=342, Percent_Identity=26.9005847953216, Blast_Score=88, Evalue=9e-18, Organism=Drosophila melanogaster, GI281362672, Length=456, Percent_Identity=25.219298245614, Blast_Score=88, Evalue=9e-18, Organism=Drosophila melanogaster, GI21356279, Length=456, Percent_Identity=25.219298245614, Blast_Score=88, Evalue=9e-18, Organism=Drosophila melanogaster, GI24646388, Length=349, Percent_Identity=27.5071633237822, Blast_Score=81, Evalue=1e-15, Organism=Drosophila melanogaster, GI24646386, Length=349, Percent_Identity=27.5071633237822, Blast_Score=81, Evalue=1e-15, Organism=Drosophila melanogaster, GI78707232, Length=351, Percent_Identity=23.3618233618234, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI281363505, Length=366, Percent_Identity=24.8633879781421, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI78707236, Length=366, Percent_Identity=24.8633879781421, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI281363503, Length=366, Percent_Identity=23.224043715847, Blast_Score=75, Evalue=8e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015884 - InterPro: IPR012301 - InterPro: IPR012302 - InterPro: IPR012188 - InterPro: IPR016040 - InterPro: IPR002505 [H]
Pfam domain/function: PF00390 malic; PF03949 Malic_M; PF01515 PTA_PTB [H]
EC number: =1.1.1.40 [H]
Molecular weight: Translated: 45329; Mature: 45198
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: PS00331 MALIC_ENZYMES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEDFREQALHYHAYPTPGKIEIALTKPADTVEDLALAYSPGVAEPVREIAKNPDDVYKY CCHHHHHHHHEECCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHCCCHHHHEE TSKGNMVAVISNGTAILGLGNLGPLASKPVMEGKSLLFKRFAGLDSIDIEVKHRTIDEFV CCCCCEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHH DTVANIADTFGGINLEDIKAPDCFEIERRLIERCDIPVFHDDQHGTAIVTAAGMLNAIEL HHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHCCCCEEECCCCCCEEEEHHHHHHHHHH QGKKLEDAIIVCLGAGAAAVACMEMLIKCGAMREKIYMLDRKGVIHTRRDDINEYKQRFA CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHC NNTDKRTLEDVIEGADLFLGVSGPNLLPPEALKLMADKPVVFACSNPDPEIKPELAHEVR CCCCHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHH NDLIMGTGRSDYPNQVNNVLCFPFIFRGALDVRASVINDEMKLAAVEAIRQLTKEPVPVE HCEEECCCCCCCCHHHHCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH VLKAAGVDSLEFGKGYIIPKPMDPRLLPRVAKAVAQAAVDSGVARIEMPEGYMEA HHHHCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCHHCCC >Mature Secondary Structure SEDFREQALHYHAYPTPGKIEIALTKPADTVEDLALAYSPGVAEPVREIAKNPDDVYKY CHHHHHHHHEECCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHCCCHHHHEE TSKGNMVAVISNGTAILGLGNLGPLASKPVMEGKSLLFKRFAGLDSIDIEVKHRTIDEFV CCCCCEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHH DTVANIADTFGGINLEDIKAPDCFEIERRLIERCDIPVFHDDQHGTAIVTAAGMLNAIEL HHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHCCCCEEECCCCCCEEEEHHHHHHHHHH QGKKLEDAIIVCLGAGAAAVACMEMLIKCGAMREKIYMLDRKGVIHTRRDDINEYKQRFA CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHC NNTDKRTLEDVIEGADLFLGVSGPNLLPPEALKLMADKPVVFACSNPDPEIKPELAHEVR CCCCHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHH NDLIMGTGRSDYPNQVNNVLCFPFIFRGALDVRASVINDEMKLAAVEAIRQLTKEPVPVE HCEEECCCCCCCCHHHHCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH VLKAAGVDSLEFGKGYIIPKPMDPRLLPRVAKAVAQAAVDSGVARIEMPEGYMEA HHHHCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503; 36376 [H]