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The map label for this gene is tolC [H]

Identifier: 209696083

GI number: 209696083

Start: 2893685

End: 2895010

Strand: Direct

Name: tolC [H]

Synonym: VSAL_I2675

Alternate gene names: 209696083

Gene position: 2893685-2895010 (Clockwise)

Preceding gene: 209696076

Following gene: 209696087

Centisome position: 87.02

GC content: 39.22

Gene sequence:

>1326_bases
ATGAAAAAACTGCTTCCGCTTTTTATTGGAATGGCATTAGGTAGTTTCAGCTCTCTAGCTACTGCTGATGACCTAGCGCA
AATCTACAATCAAGCTAAAGAAAATGACCCCCAATTATTAAGAGCTGCGGCGACTAAAGATGCGGCATTTGAAGCGGTGA
ACTCTTCTCAAAGTTCATTATTACCACAAATAGATTTAACCGCAGGTTACAACATATTACGTAGTGATGAAGATCGTAGA
GATAATGACCGATTAACTGCAGGTATTAATTTATCTCAAGAACTTTACCAACAATCAAGCTGGGTAAGTTTAGATATTTC
TGAGAAAAATGCTCGCCAAGCAGATTCTGCTTATGCAGCAGAGCAACAAAACGTGATTTTACGTGTTGCTCAGGCTTATT
TTGATGTATTACGTGCTAACGACAATCTAGAATTTGTCCGCTCAGAAAAAGCCGCTGTTGGTCGTCAACTTGAACAAACA
AAACAACGTTTTGATGTTGGTCTATCCGCAATTACTGATGTTCATGATGCACAAGCTGAATACGATAGCGTACTAGCGAA
TGAAGTATTAACCGAAAACCAACTAGTAAACAGCTACGAAGATCTTCGTGTTATTACGGGTTTAGGTCATACCTCTCTAA
GTGTATTAGATACTAAGCGTTTCTCTGCGAGTCCTTCAGAACAATCATCTGACACTTTAATTGAAGAAGCTCAAAAGAAA
AACTTAACACTATTGGCTTCTCGCATTAGTGCTGATATTGCAAAAGATAACATCTCCTTAGCAAGCTCTGGTCACATGCC
ATCGTTAACATTAGACGCTAGTTATAATTATACTGACCAAAGCAATTCGGGCTTATCAGCAAACGACGGTAACTACGGTG
ACATCAACGCAGGCATTAACTTAAATATCCCTCTATACACGGGTGGTAATACAAGTTCATTAACAAGCCAAGCTGAATTC
CAATATGTCGCAGCAAGCCAAGATCTTGAAGCTACATACCGCGAAGTCACTAAAGATGTTCGTGCTTACAATAACAACAT
TAATGCCTCTATTGGTGCATTAAAAGCCTACGGACAAACGGTTATCTCAGCAAACTCTGCATTAGAAGCAACAGAAGCAG
GCTTTGATGTAGGTACTCGTACTATTGTTGATGTGTTGGATTCAACTCGTCGTTTATACGATGCAAACCGTAACCTAGCA
AATGCTCGTTACGATTACATTTTAAGTGTTCTTCAGCTAAAACAAGCCGTTGGTACACTAAGCGAACAAGATATTATCGA
TATCAACATGGGTCTAAAAGCGGGTAAAACAACTCAAGCTAAATAA

Upstream 100 bases:

>100_bases
TAAACGTAAAAAAATGTAATCTTTGCAGCCATAGTCTATAGAGATAAGGTACACTCTATGTACTATTTTTATATAAAACA
ATTTTGCAGGATCAACCACC

Downstream 100 bases:

>100_bases
CCTGATATCAAATAAAAAAAGCCACATTATTTATAATGTGGCTTTTTTATTAGCGATTAAAGAGTAAAAACTAAATTAGC
CTCTACCACCTTTAATGGCT

Product: outer membrane channel protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MKKLLPLFIGMALGSFSSLATADDLAQIYNQAKENDPQLLRAAATKDAAFEAVNSSQSSLLPQIDLTAGYNILRSDEDRR
DNDRLTAGINLSQELYQQSSWVSLDISEKNARQADSAYAAEQQNVILRVAQAYFDVLRANDNLEFVRSEKAAVGRQLEQT
KQRFDVGLSAITDVHDAQAEYDSVLANEVLTENQLVNSYEDLRVITGLGHTSLSVLDTKRFSASPSEQSSDTLIEEAQKK
NLTLLASRISADIAKDNISLASSGHMPSLTLDASYNYTDQSNSGLSANDGNYGDINAGINLNIPLYTGGNTSSLTSQAEF
QYVAASQDLEATYREVTKDVRAYNNNINASIGALKAYGQTVISANSALEATEAGFDVGTRTIVDVLDSTRRLYDANRNLA
NARYDYILSVLQLKQAVGTLSEQDIIDINMGLKAGKTTQAK

Sequences:

>Translated_441_residues
MKKLLPLFIGMALGSFSSLATADDLAQIYNQAKENDPQLLRAAATKDAAFEAVNSSQSSLLPQIDLTAGYNILRSDEDRR
DNDRLTAGINLSQELYQQSSWVSLDISEKNARQADSAYAAEQQNVILRVAQAYFDVLRANDNLEFVRSEKAAVGRQLEQT
KQRFDVGLSAITDVHDAQAEYDSVLANEVLTENQLVNSYEDLRVITGLGHTSLSVLDTKRFSASPSEQSSDTLIEEAQKK
NLTLLASRISADIAKDNISLASSGHMPSLTLDASYNYTDQSNSGLSANDGNYGDINAGINLNIPLYTGGNTSSLTSQAEF
QYVAASQDLEATYREVTKDVRAYNNNINASIGALKAYGQTVISANSALEATEAGFDVGTRTIVDVLDSTRRLYDANRNLA
NARYDYILSVLQLKQAVGTLSEQDIIDINMGLKAGKTTQAK
>Mature_441_residues
MKKLLPLFIGMALGSFSSLATADDLAQIYNQAKENDPQLLRAAATKDAAFEAVNSSQSSLLPQIDLTAGYNILRSDEDRR
DNDRLTAGINLSQELYQQSSWVSLDISEKNARQADSAYAAEQQNVILRVAQAYFDVLRANDNLEFVRSEKAAVGRQLEQT
KQRFDVGLSAITDVHDAQAEYDSVLANEVLTENQLVNSYEDLRVITGLGHTSLSVLDTKRFSASPSEQSSDTLIEEAQKK
NLTLLASRISADIAKDNISLASSGHMPSLTLDASYNYTDQSNSGLSANDGNYGDINAGINLNIPLYTGGNTSSLTSQAEF
QYVAASQDLEATYREVTKDVRAYNNNINASIGALKAYGQTVISANSALEATEAGFDVGTRTIVDVLDSTRRLYDANRNLA
NARYDYILSVLQLKQAVGTLSEQDIIDINMGLKAGKTTQAK

Specific function: May be specialized for signal sequence independent, extracellular secretion in Gram-negative bacteria [H]

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI87082199, Length=449, Percent_Identity=45.2115812917595, Blast_Score=358, Evalue=1e-100,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 240 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010130 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 47947; Mature: 47947

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLLPLFIGMALGSFSSLATADDLAQIYNQAKENDPQLLRAAATKDAAFEAVNSSQSSL
CCHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHC
LPQIDLTAGYNILRSDEDRRDNDRLTAGINLSQELYQQSSWVSLDISEKNARQADSAYAA
CCEEECCCCCHHHCCCCCCCCCCCEEECCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
EQQNVILRVAQAYFDVLRANDNLEFVRSEKAAVGRQLEQTKQRFDVGLSAITDVHDAQAE
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YDSVLANEVLTENQLVNSYEDLRVITGLGHTSLSVLDTKRFSASPSEQSSDTLIEEAQKK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHCCHHCCCCCCCCCHHHHHHHHHHC
NLTLLASRISADIAKDNISLASSGHMPSLTLDASYNYTDQSNSGLSANDGNYGDINAGIN
CHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEECCCEE
LNIPLYTGGNTSSLTSQAEFQYVAASQDLEATYREVTKDVRAYNNNINASIGALKAYGQT
EEEEEEECCCCCCCCCHHHEEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
VISANSALEATEAGFDVGTRTIVDVLDSTRRLYDANRNLANARYDYILSVLQLKQAVGTL
HHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
SEQDIIDINMGLKAGKTTQAK
CCCCEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MKKLLPLFIGMALGSFSSLATADDLAQIYNQAKENDPQLLRAAATKDAAFEAVNSSQSSL
CCHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHC
LPQIDLTAGYNILRSDEDRRDNDRLTAGINLSQELYQQSSWVSLDISEKNARQADSAYAA
CCEEECCCCCHHHCCCCCCCCCCCEEECCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
EQQNVILRVAQAYFDVLRANDNLEFVRSEKAAVGRQLEQTKQRFDVGLSAITDVHDAQAE
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YDSVLANEVLTENQLVNSYEDLRVITGLGHTSLSVLDTKRFSASPSEQSSDTLIEEAQKK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHCCHHCCCCCCCCCHHHHHHHHHHC
NLTLLASRISADIAKDNISLASSGHMPSLTLDASYNYTDQSNSGLSANDGNYGDINAGIN
CHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEECCCEE
LNIPLYTGGNTSSLTSQAEFQYVAASQDLEATYREVTKDVRAYNNNINASIGALKAYGQT
EEEEEEECCCCCCCCCHHHEEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
VISANSALEATEAGFDVGTRTIVDVLDSTRRLYDANRNLANARYDYILSVLQLKQAVGTL
HHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
SEQDIIDINMGLKAGKTTQAK
CCCCEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]