| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is secA
Identifier: 209696045
GI number: 209696045
Start: 2851682
End: 2854405
Strand: Reverse
Name: secA
Synonym: VSAL_I2637
Alternate gene names: 209696045
Gene position: 2854405-2851682 (Counterclockwise)
Preceding gene: 209696047
Following gene: 209696044
Centisome position: 85.84
GC content: 38.47
Gene sequence:
>2724_bases ATGTTTTCTAAAATCCTAACTAAAGTTATTGGTAGCCGTAATGATCGTACATTACGTAAGCTACGTAAAATTGTTGACCA AATTAATAAACTTGAACCACAATTCGAATCATTACAAGACGAAGAATTAAAAGCGAAAACGATAGAGTTCCGTTCACGTT TAGAACAAGGTGAATCTTTAGATGATTTACTGCCAGAAGCATTCGCAACAGTTCGTGAAGCTTCTAAGCGTTTATATGGC ATGCGTCATTTTGATGTACAAATGATTGGCGGCATGGTGCTAAACGATAGCCAAATCGCAGAAATGCGTACAGGTGAAGG TAAAACATTAACGGCAACCCTACCATGTTACTTAAATGCGTTAACAGGTAAAGGTGTTCATGTTGTTACTGTGAATGATT ACCTTGCTAAGCGTGATGCAGAGACAAACCGCGAATTATTTGAATTCTTAGGCATGACAGTTGGTATTAATGTACCGAAT ATGCCACCGCAAGAAAAAAAATTAGCTTATCAATCCGATATATTATACGGAACAAACAATGAGTTTGGTTTTGACTATCT ACGTGACAACATGGCTTTCCGTGCTGAAGACCGTGTTCAACGTGAGCGTTATTTTGCGGTAATCGATGAAGTGGATTCCA TTTTAATCGATGAAGCTCGTACTCCATTGATCATTTCTGGTCCTGCAGACGACAGTTCTGAACTATACACCCGTATCAAT ATACTGATCCCTCAACTTGTTAAACAAGATGAAGAAGACAGCGAAGATTACCGTGGTGAAGGTCATTACACATTAGATGA AAAAGGCAAGCAAACTCATTTAACTGAAAATGGTCAAGAATTTGTTGAACAATTACTAAAAGATGAAGGCTTAATGGAAG AAGAGGATACGTTATATTCTCCTGCTAACATTAGTTTACTTCATCATATCAATGCGGCATTACGTGCTCATGTATTGTTT GAAAAAGACGTCGATTATATTGTAAAAGACGATGAAGTTATCATCGTTGATGAACATACTGGCCGTACTATGCCTGGTCG TCGTTGGTCTGAAGGGTTGCACCAAGCTGTAGAAGCGAAAGAAGGTGTGAAAATTCAAAATGAAAACCAAACATTAGCTT CTATCACATTCCAAAACTTCTTCCGTTTATATGACAAACTATCTGGAATGACGGGTACCGCTGATACTGAAGCTTTTGAG TTCCAATCTATTTATGGTTTAGATACGGTTGTTATCCCAACGAACCGTCCAATGACTCGTAATGACATGGGCGATTTGGT CTACATGACTGAAGCTGAAAAATTTGCAGCTATCATTGAGGACATAAAAGCGTGTTCTGAACGTGGTCAGCCAGTATTGG TTGGTACTGTTTCAATTGAAAAATCTGAATTACTTTCAAATGCATTGAAAACAGCAAAAATTAAGCACAACGTTCTTAAT GCTAAGTTCCATGAACAAGAAGCCGATATCGTTGCTAATGCGGGTACGTCAAGCGCCGTAACTATTGCTACAAACATGGC TGGTCGTGGTACTGATATCGTGTTGGGTGGTAACTGGCAAGCAGAAGTTGCTAAGTTAGATAATCCGTCTGCGGAACAAG TTCAAACCATTAAAGCGGCTTGGAAAGAAGCGCATGATACGGTTTTGACTGCTGGTGGTCTTCATATTATTGGTACAGAA CGTCATGAATCACGTCGTATTGATAATCAATTACGTGGTCGTGCTGGTCGTCAAGGTGATGCTGGTTCTTCACGTTTCTA CTTATCAATGGAAGATGCGTTAATGCGTATCTTTGCTTCAGATCGTGTGTCTAACATGATGAAAAAGTTAGGTATGGAAG AAGGCGAAGCGATTGAGCATCCTTGGGTAACTAAAGCGATAGAAAACGCACAACGTAAAGTTGAAGGTCGTAACTTCGAT ATTCGTAAACAATTACTTGAATACGATGATGTTGCAAATGACCAACGTAAAGTCGTTTATGAATTACGTGATGAGTTAAT GAACGTTGATGATATCAGTGAAATGATTAATCATAATCGTCAAGACGTACTTGAAGGGTTGTTTGGTCAGTATATTCCGC CACAATCATTAGAAGAAATGTGGGATGTTGAAGGGTTAACGACTCGCCTACGCACTGATTTTGATTTGGATTTACCAATT CAAGAATGGCTAGATAGCGATAATAAACTTCATGAAGATAACCTACGTGAAAAAATTATTGAAAGTGCATTCCAAGTTTA TAAAGAGAAAGAAGAGTCTGTTGGCGAATCTGTTCTACGTAACTTTGAAAAAGCCGTGATGCTGCAAACGCTTGATGGAT TATGGAAAGAGCACTTAGCGGCGATGGACCATTTACGTCAAGGTATTCATTTACGTGGTTATGCTCAAAAGAACCCGAAA CAAGAATACAAGCGTGAGTCATTTGAGTTATTTGAAGGTTTACTTGATACGTTAAAATTAGATGTTGTTTCAATTTTAAG TAAAGTTAGAGTTCAACAACAAGAAGATGTTGAACGTATGGAAGAGCAACGTCGTAAAAATGCAGAAGAAGTTGCTCGAC TTCAAAAACTACAGCATCAAAATGCAGAAAATCAACTTGATGATGGTCATTCTTCAGATCAAAACCACTCACCAATGGTA CGTGATGAACGTAAAGTTGGACGAAATGAAGTATGCCCATGTGGTTCAGGTAAAAAATACAAACAATGCCATGGTAAAAT CTAG
Upstream 100 bases:
>100_bases CGAAGAAGTATTTTTCTTAGAGTAATTTCTCTAGGTGATTGATTCAAATTTCAAATTAAACGATCTATTACGATCAAGAG ATAAGAGAAGCAACGGAATC
Downstream 100 bases:
>100_bases TCAGTCATTTACCTGCGCATGAATAAATAAAAAGCCGCTCTTGTTAGCGGCTTTTTTTATAGCGATACCGATTTAAAATT GAAAAATATAGGGAAGATAA
Product: preprotein translocase subunit SecA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 907; Mature: 907
Protein sequence:
>907_residues MFSKILTKVIGSRNDRTLRKLRKIVDQINKLEPQFESLQDEELKAKTIEFRSRLEQGESLDDLLPEAFATVREASKRLYG MRHFDVQMIGGMVLNDSQIAEMRTGEGKTLTATLPCYLNALTGKGVHVVTVNDYLAKRDAETNRELFEFLGMTVGINVPN MPPQEKKLAYQSDILYGTNNEFGFDYLRDNMAFRAEDRVQRERYFAVIDEVDSILIDEARTPLIISGPADDSSELYTRIN ILIPQLVKQDEEDSEDYRGEGHYTLDEKGKQTHLTENGQEFVEQLLKDEGLMEEEDTLYSPANISLLHHINAALRAHVLF EKDVDYIVKDDEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVKIQNENQTLASITFQNFFRLYDKLSGMTGTADTEAFE FQSIYGLDTVVIPTNRPMTRNDMGDLVYMTEAEKFAAIIEDIKACSERGQPVLVGTVSIEKSELLSNALKTAKIKHNVLN AKFHEQEADIVANAGTSSAVTIATNMAGRGTDIVLGGNWQAEVAKLDNPSAEQVQTIKAAWKEAHDTVLTAGGLHIIGTE RHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDALMRIFASDRVSNMMKKLGMEEGEAIEHPWVTKAIENAQRKVEGRNFD IRKQLLEYDDVANDQRKVVYELRDELMNVDDISEMINHNRQDVLEGLFGQYIPPQSLEEMWDVEGLTTRLRTDFDLDLPI QEWLDSDNKLHEDNLREKIIESAFQVYKEKEESVGESVLRNFEKAVMLQTLDGLWKEHLAAMDHLRQGIHLRGYAQKNPK QEYKRESFELFEGLLDTLKLDVVSILSKVRVQQQEDVERMEEQRRKNAEEVARLQKLQHQNAENQLDDGHSSDQNHSPMV RDERKVGRNEVCPCGSGKKYKQCHGKI
Sequences:
>Translated_907_residues MFSKILTKVIGSRNDRTLRKLRKIVDQINKLEPQFESLQDEELKAKTIEFRSRLEQGESLDDLLPEAFATVREASKRLYG MRHFDVQMIGGMVLNDSQIAEMRTGEGKTLTATLPCYLNALTGKGVHVVTVNDYLAKRDAETNRELFEFLGMTVGINVPN MPPQEKKLAYQSDILYGTNNEFGFDYLRDNMAFRAEDRVQRERYFAVIDEVDSILIDEARTPLIISGPADDSSELYTRIN ILIPQLVKQDEEDSEDYRGEGHYTLDEKGKQTHLTENGQEFVEQLLKDEGLMEEEDTLYSPANISLLHHINAALRAHVLF EKDVDYIVKDDEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVKIQNENQTLASITFQNFFRLYDKLSGMTGTADTEAFE FQSIYGLDTVVIPTNRPMTRNDMGDLVYMTEAEKFAAIIEDIKACSERGQPVLVGTVSIEKSELLSNALKTAKIKHNVLN AKFHEQEADIVANAGTSSAVTIATNMAGRGTDIVLGGNWQAEVAKLDNPSAEQVQTIKAAWKEAHDTVLTAGGLHIIGTE RHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDALMRIFASDRVSNMMKKLGMEEGEAIEHPWVTKAIENAQRKVEGRNFD IRKQLLEYDDVANDQRKVVYELRDELMNVDDISEMINHNRQDVLEGLFGQYIPPQSLEEMWDVEGLTTRLRTDFDLDLPI QEWLDSDNKLHEDNLREKIIESAFQVYKEKEESVGESVLRNFEKAVMLQTLDGLWKEHLAAMDHLRQGIHLRGYAQKNPK QEYKRESFELFEGLLDTLKLDVVSILSKVRVQQQEDVERMEEQRRKNAEEVARLQKLQHQNAENQLDDGHSSDQNHSPMV RDERKVGRNEVCPCGSGKKYKQCHGKI >Mature_907_residues MFSKILTKVIGSRNDRTLRKLRKIVDQINKLEPQFESLQDEELKAKTIEFRSRLEQGESLDDLLPEAFATVREASKRLYG MRHFDVQMIGGMVLNDSQIAEMRTGEGKTLTATLPCYLNALTGKGVHVVTVNDYLAKRDAETNRELFEFLGMTVGINVPN MPPQEKKLAYQSDILYGTNNEFGFDYLRDNMAFRAEDRVQRERYFAVIDEVDSILIDEARTPLIISGPADDSSELYTRIN ILIPQLVKQDEEDSEDYRGEGHYTLDEKGKQTHLTENGQEFVEQLLKDEGLMEEEDTLYSPANISLLHHINAALRAHVLF EKDVDYIVKDDEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVKIQNENQTLASITFQNFFRLYDKLSGMTGTADTEAFE FQSIYGLDTVVIPTNRPMTRNDMGDLVYMTEAEKFAAIIEDIKACSERGQPVLVGTVSIEKSELLSNALKTAKIKHNVLN AKFHEQEADIVANAGTSSAVTIATNMAGRGTDIVLGGNWQAEVAKLDNPSAEQVQTIKAAWKEAHDTVLTAGGLHIIGTE RHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDALMRIFASDRVSNMMKKLGMEEGEAIEHPWVTKAIENAQRKVEGRNFD IRKQLLEYDDVANDQRKVVYELRDELMNVDDISEMINHNRQDVLEGLFGQYIPPQSLEEMWDVEGLTTRLRTDFDLDLPI QEWLDSDNKLHEDNLREKIIESAFQVYKEKEESVGESVLRNFEKAVMLQTLDGLWKEHLAAMDHLRQGIHLRGYAQKNPK QEYKRESFELFEGLLDTLKLDVVSILSKVRVQQQEDVERMEEQRRKNAEEVARLQKLQHQNAENQLDDGHSSDQNHSPMV RDERKVGRNEVCPCGSGKKYKQCHGKI
Specific function: Part of the Sec protein translocase complex. Interacts with the secYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the pr
COG id: COG0653
COG function: function code U; Preprotein translocase subunit SecA (ATPase, RNA helicase)
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Cytoplasm (By similarity). Note=Distribution is 50-50 (By similarity)
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secA family
Homologues:
Organism=Escherichia coli, GI1786287, Length=907, Percent_Identity=71.8853362734289, Blast_Score=1383, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): SECA_ALISL (B6ELG8)
Other databases:
- EMBL: FM178379 - RefSeq: YP_002263975.1 - GeneID: 6988871 - GenomeReviews: FM178379_GR - KEGG: vsa:VSAL_I2637 - HOGENOM: HBG284200 - OMA: GGMVLHD - ProtClustDB: PRK12904 - GO: GO:0005737 - HAMAP: MF_01382 - InterPro: IPR004027 - InterPro: IPR000185 - InterPro: IPR020937 - InterPro: IPR011115 - InterPro: IPR014018 - InterPro: IPR011130 - InterPro: IPR011116 - Gene3D: G3DSA:1.10.3060.10 - PRINTS: PR00906 - SMART: SM00957 - SMART: SM00958 - TIGRFAMs: TIGR00963
Pfam domain/function: PF02810 SEC-C; PF07517 SecA_DEAD; PF01043 SecA_PP_bind; PF07516 SecA_SW; SSF81767 SecA_PP_bd; SSF81886 SecA_SW
EC number: NA
Molecular weight: Translated: 103451; Mature: 103451
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: PS01312 SECA; PS51196 SECA_MOTOR_DEAD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFSKILTKVIGSRNDRTLRKLRKIVDQINKLEPQFESLQDEELKAKTIEFRSRLEQGESL CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHCCCCH DDLLPEAFATVREASKRLYGMRHFDVQMIGGMVLNDSQIAEMRTGEGKTLTATLPCYLNA HHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEECCHHHHHHHCCCCCEEEEEHHHHHHH LTGKGVHVVTVNDYLAKRDAETNRELFEFLGMTVGINVPNMPPQEKKLAYQSDILYGTNN HCCCCEEEEEECHHHHHCCCCCHHHHHHHHCCEEECCCCCCCCHHHHHHHHHCEEECCCC EFGFDYLRDNMAFRAEDRVQRERYFAVIDEVDSILIDEARTPLIISGPADDSSELYTRIN CCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH ILIPQLVKQDEEDSEDYRGEGHYTLDEKGKQTHLTENGQEFVEQLLKDEGLMEEEDTLYS HHHHHHHCCCCCCCHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC PANISLLHHINAALRAHVLFEKDVDYIVKDDEVIIVDEHTGRTMPGRRWSEGLHQAVEAK CCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHH EGVKIQNENQTLASITFQNFFRLYDKLSGMTGTADTEAFEFQSIYGLDTVVIPTNRPMTR CCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCC NDMGDLVYMTEAEKFAAIIEDIKACSERGQPVLVGTVSIEKSELLSNALKTAKIKHNVLN CCCCCEEEEECHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHC AKFHEQEADIVANAGTSSAVTIATNMAGRGTDIVLGGNWQAEVAKLDNPSAEQVQTIKAA CHHHHCCHHHEECCCCCCEEEEEECCCCCCCEEEECCCCCCHHHCCCCCCHHHHHHHHHH WKEAHDTVLTAGGLHIIGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDALMRIFAS HHHHHHHEEECCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHH DRVSNMMKKLGMEEGEAIEHPWVTKAIENAQRKVEGRNFDIRKQLLEYDDVANDQRKVVY HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHH ELRDELMNVDDISEMINHNRQDVLEGLFGQYIPPQSLEEMWDVEGLTTRLRTDFDLDLPI HHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHCCCCCCCCCH QEWLDSDNKLHEDNLREKIIESAFQVYKEKEESVGESVLRNFEKAVMLQTLDGLWKEHLA HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AMDHLRQGIHLRGYAQKNPKQEYKRESFELFEGLLDTLKLDVVSILSKVRVQQQEDVERM HHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EEQRRKNAEEVARLQKLQHQNAENQLDDGHSSDQNHSPMVRDERKVGRNEVCPCGSGKKY HHHHHCCHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHH KQCHGKI HHHCCCC >Mature Secondary Structure MFSKILTKVIGSRNDRTLRKLRKIVDQINKLEPQFESLQDEELKAKTIEFRSRLEQGESL CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHCCCCH DDLLPEAFATVREASKRLYGMRHFDVQMIGGMVLNDSQIAEMRTGEGKTLTATLPCYLNA HHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEECCHHHHHHHCCCCCEEEEEHHHHHHH LTGKGVHVVTVNDYLAKRDAETNRELFEFLGMTVGINVPNMPPQEKKLAYQSDILYGTNN HCCCCEEEEEECHHHHHCCCCCHHHHHHHHCCEEECCCCCCCCHHHHHHHHHCEEECCCC EFGFDYLRDNMAFRAEDRVQRERYFAVIDEVDSILIDEARTPLIISGPADDSSELYTRIN CCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHH ILIPQLVKQDEEDSEDYRGEGHYTLDEKGKQTHLTENGQEFVEQLLKDEGLMEEEDTLYS HHHHHHHCCCCCCCHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC PANISLLHHINAALRAHVLFEKDVDYIVKDDEVIIVDEHTGRTMPGRRWSEGLHQAVEAK CCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHH EGVKIQNENQTLASITFQNFFRLYDKLSGMTGTADTEAFEFQSIYGLDTVVIPTNRPMTR CCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCC NDMGDLVYMTEAEKFAAIIEDIKACSERGQPVLVGTVSIEKSELLSNALKTAKIKHNVLN CCCCCEEEEECHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHC AKFHEQEADIVANAGTSSAVTIATNMAGRGTDIVLGGNWQAEVAKLDNPSAEQVQTIKAA CHHHHCCHHHEECCCCCCEEEEEECCCCCCCEEEECCCCCCHHHCCCCCCHHHHHHHHHH WKEAHDTVLTAGGLHIIGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDALMRIFAS HHHHHHHEEECCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHH DRVSNMMKKLGMEEGEAIEHPWVTKAIENAQRKVEGRNFDIRKQLLEYDDVANDQRKVVY HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHH ELRDELMNVDDISEMINHNRQDVLEGLFGQYIPPQSLEEMWDVEGLTTRLRTDFDLDLPI HHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHCCCCCCCCCH QEWLDSDNKLHEDNLREKIIESAFQVYKEKEESVGESVLRNFEKAVMLQTLDGLWKEHLA HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AMDHLRQGIHLRGYAQKNPKQEYKRESFELFEGLLDTLKLDVVSILSKVRVQQQEDVERM HHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EEQRRKNAEEVARLQKLQHQNAENQLDDGHSSDQNHSPMVRDERKVGRNEVCPCGSGKKY HHHHHCCHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHH KQCHGKI HHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA