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The map label for this gene is cdaR [H]

Identifier: 209696008

GI number: 209696008

Start: 2794974

End: 2796119

Strand: Direct

Name: cdaR [H]

Synonym: VSAL_I2592

Alternate gene names: 209696008

Gene position: 2794974-2796119 (Clockwise)

Preceding gene: 209696001

Following gene: 209696009

Centisome position: 84.06

GC content: 34.21

Gene sequence:

>1146_bases
ATGCAGTTAACCACTATCATTGCGAAACAAATCGTAGAAAGAACAATGAAAATAATTAAGCATTCAGTCAATGTCATGGA
TGAATACGGCGTGATTATCGGTTCAGGTGACCAAACAAGATTACACTGTCGTCATGAGGGTGCGATTTTAGCGATTAATG
AAAATAGAATCGTCGAAATAGATAACGCCACCGCATTACAATTACGTGGTGTAAAAGCGGGAATAAATCTCCCTATTATT
TTTCAAAATACGGTTATTGGTGCTGTTGGCGTTTCTGGAAAGCTTTGCGAAATACAACAATATGGTGAACTCGTTAAAAT
GACCGCAGAACTCATCATAGAACAAGCGGCTTTAATGACTGAAATACAGTGGTCAAAAAGGCACAAAGAAGAATTAGTAC
TGCAATTAATTCAACCTTCAGATTTAAATACACAACAACTCAACTCTATTGCAGAGCGGTTAGAACTCGATCTTCAACAA
CCAAGAATAGCTACAATTATAAAAGTAGATTCTTTTAAAGGAGAAAATTTATCTCTGACTCACTTACAAAAACTTGTCCA
TTTATTGGAATATCCTGAACGAGATAATCTGGTTGCTATTAGTTCAGTTACATTAAATGAAGTCGTCGTTTTGAAACCAA
TCACATTAACTGAAAATGGTTGGAACCGTACTTATGAAGAAAAACGTATTCGCCAACTTTTTCAACGAATTTCTCATGAT
GAAAAATTTACGATAAAAATAGCACTCGGTGATTATTTTCCAACAATAGAAGGACTTGCACAGTCCTATATGACAGCAAA
AGCCACAATGAACACTGCAAACTCAAAAAATCGAATTCTTTTTTATCAAGATAATGTTCTTCCTGTATTAATTAATGGTC
TCAAATCAGATGATTGGCGCTCGGAACAATTGAAACTGCCAATAACAAAACTTACTGCTCACGATTCAAAAGGAGTATTA
CTTAAAACGCTCCACGCTTTTTTTAACCATAATTGTGATTCAGCTCAAACCTGCAATGCTCTCCACATACATAGAAATAC
ATTACGATACAGATTAGATAACATACAAAAAGAAACAGGCTTAGATATCAATAAGATAAATGAAATTACATATTTATATC
TAGCGACATTAATGCATGAACAATAA

Upstream 100 bases:

>100_bases
AATCAAAGATAACGTTGAGCTATTTTCTTTCAGTATAATCCCATCCCTGCTTTTTTTATAGCTAACCGTAGCTTCACCTT
ATGATTAACGAGATTTTATA

Downstream 100 bases:

>100_bases
GTCACACTTTGTGCATCTACACAATAAAATAGATTATCTGTCAATTAAATTTGGTCATTAGTCTAAAGCTTATTATCGTT
GTTACCGATAGATTACCGAC

Product: carbohydrate diacid regulator (sugar diacid regulator)

Products: NA

Alternate protein names: Sugar diacid regulator [H]

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MQLTTIIAKQIVERTMKIIKHSVNVMDEYGVIIGSGDQTRLHCRHEGAILAINENRIVEIDNATALQLRGVKAGINLPII
FQNTVIGAVGVSGKLCEIQQYGELVKMTAELIIEQAALMTEIQWSKRHKEELVLQLIQPSDLNTQQLNSIAERLELDLQQ
PRIATIIKVDSFKGENLSLTHLQKLVHLLEYPERDNLVAISSVTLNEVVVLKPITLTENGWNRTYEEKRIRQLFQRISHD
EKFTIKIALGDYFPTIEGLAQSYMTAKATMNTANSKNRILFYQDNVLPVLINGLKSDDWRSEQLKLPITKLTAHDSKGVL
LKTLHAFFNHNCDSAQTCNALHIHRNTLRYRLDNIQKETGLDINKINEITYLYLATLMHEQ

Sequences:

>Translated_381_residues
MQLTTIIAKQIVERTMKIIKHSVNVMDEYGVIIGSGDQTRLHCRHEGAILAINENRIVEIDNATALQLRGVKAGINLPII
FQNTVIGAVGVSGKLCEIQQYGELVKMTAELIIEQAALMTEIQWSKRHKEELVLQLIQPSDLNTQQLNSIAERLELDLQQ
PRIATIIKVDSFKGENLSLTHLQKLVHLLEYPERDNLVAISSVTLNEVVVLKPITLTENGWNRTYEEKRIRQLFQRISHD
EKFTIKIALGDYFPTIEGLAQSYMTAKATMNTANSKNRILFYQDNVLPVLINGLKSDDWRSEQLKLPITKLTAHDSKGVL
LKTLHAFFNHNCDSAQTCNALHIHRNTLRYRLDNIQKETGLDINKINEITYLYLATLMHEQ
>Mature_381_residues
MQLTTIIAKQIVERTMKIIKHSVNVMDEYGVIIGSGDQTRLHCRHEGAILAINENRIVEIDNATALQLRGVKAGINLPII
FQNTVIGAVGVSGKLCEIQQYGELVKMTAELIIEQAALMTEIQWSKRHKEELVLQLIQPSDLNTQQLNSIAERLELDLQQ
PRIATIIKVDSFKGENLSLTHLQKLVHLLEYPERDNLVAISSVTLNEVVVLKPITLTENGWNRTYEEKRIRQLFQRISHD
EKFTIKIALGDYFPTIEGLAQSYMTAKATMNTANSKNRILFYQDNVLPVLINGLKSDDWRSEQLKLPITKLTAHDSKGVL
LKTLHAFFNHNCDSAQTCNALHIHRNTLRYRLDNIQKETGLDINKINEITYLYLATLMHEQ

Specific function: Seems to regulate the expression of the operons for the enzymes involved in D-galactarate, D-glucarate and D-glycerate utilization [H]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=383, Percent_Identity=42.8198433420365, Blast_Score=305, Evalue=3e-84,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 43394; Mature: 43394

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLTTIIAKQIVERTMKIIKHSVNVMDEYGVIIGSGDQTRLHCRHEGAILAINENRIVEI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEEEECCCEEEEECCCEEEEE
DNATALQLRGVKAGINLPIIFQNTVIGAVGVSGKLCEIQQYGELVKMTAELIIEQAALMT
CCCCEEEEECEECCCCEEEEEECCEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHHH
EIQWSKRHKEELVLQLIQPSDLNTQQLNSIAERLELDLQQPRIATIIKVDSFKGENLSLT
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEHH
HLQKLVHLLEYPERDNLVAISSVTLNEVVVLKPITLTENGWNRTYEEKRIRQLFQRISHD
HHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCC
EKFTIKIALGDYFPTIEGLAQSYMTAKATMNTANSKNRILFYQDNVLPVLINGLKSDDWR
CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEECCCCCCCC
SEQLKLPITKLTAHDSKGVLLKTLHAFFNHNCDSAQTCNALHIHRNTLRYRLDNIQKETG
CCCEECCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHC
LDINKINEITYLYLATLMHEQ
CCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQLTTIIAKQIVERTMKIIKHSVNVMDEYGVIIGSGDQTRLHCRHEGAILAINENRIVEI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEEEECCCEEEEECCCEEEEE
DNATALQLRGVKAGINLPIIFQNTVIGAVGVSGKLCEIQQYGELVKMTAELIIEQAALMT
CCCCEEEEECEECCCCEEEEEECCEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHHH
EIQWSKRHKEELVLQLIQPSDLNTQQLNSIAERLELDLQQPRIATIIKVDSFKGENLSLT
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEHH
HLQKLVHLLEYPERDNLVAISSVTLNEVVVLKPITLTENGWNRTYEEKRIRQLFQRISHD
HHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCC
EKFTIKIALGDYFPTIEGLAQSYMTAKATMNTANSKNRILFYQDNVLPVLINGLKSDDWR
CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEECCCCCCCC
SEQLKLPITKLTAHDSKGVLLKTLHAFFNHNCDSAQTCNALHIHRNTLRYRLDNIQKETG
CCCEECCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHC
LDINKINEITYLYLATLMHEQ
CCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503; 10762278 [H]