| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is chbP [H]
Identifier: 209696000
GI number: 209696000
Start: 2784878
End: 2787166
Strand: Direct
Name: chbP [H]
Synonym: VSAL_I2584
Alternate gene names: 209696000
Gene position: 2784878-2787166 (Clockwise)
Preceding gene: 209695999
Following gene: 209696001
Centisome position: 83.75
GC content: 42.25
Gene sequence:
>2289_bases ATGAAATACGGCTTTTTTGATAACGACAATCGCGAATATGTAATTACACGCCCTGACGTACCAGCTCCATGGACGAATTA TTTAGGCACAGAAAAATTCTGTACCGTTATTTCTCATAATGCTGGCGGTTACTCTTTCTATAATTCTCCAGAGTACAATC GTGTTACTAAATTCCGTCCAAACGGTACTTTTGACCGTCCAGGGCACTATGTATACCTTCGTGATGATGAAACGGGTGAT TACTGGTCAATCTCATGGCAGCCAGTAGCAAAAAGCTTAGATGAAGCAAGCTACGAAGTTCGCCACGGCCTTTCTTACTC TAAATTCAAATGTGATTACAATGGCATTGAAGCCACCAAAACCTTATTTGTTCCAAAGGGTGAAGATGCTGAAGTATGGG ATGTGGTAATTAAGAATACCAGCGATAAGCCTCGTGTTATCTCTGCATTCTCTTTTGTTGAATTCTCATTCAGCCACATT CAATCAGATAACCAAAACCATCAAATGTCCTTGTATTCAGCTGGCACTTCTTATACTGAAGGCGTAATTGAATGTGATCT TTATTACAACACCAATGATTTTGAAGGTTTCTATTACCTAGCATCAACCTTTGATCCTGATTTATATGACGGCCAACGTG ACACTTTCTTAGGTGCATATCGTGATGAAGCTAATCCAATCGCCGTTGAAAAAGGTCAGTGCTCTAACTCTGCACAAACC TGTTACAACCATTGTGGTTCACTTCATAAACAATTCACCATTCAACCAGGTGAAGAAGTTCGCTTTGCTTACGTACTTGG CCTAGGTAAAGGCAATGGCGATCGTCTACGTAAAAAATACCAAGATGTCGCAAATGTTGATGCTGCATTCCAAGAGATCA AAGATCATTGGAGCGAGCGTTGTGAAAAATTCCAAGTTAAATCACCAAACGAAGGTTTGGATACGATGATCAACACTTGG ACACTGTATCAAGCAGAAACCTGTGTCGTGTGGTCACGTTTTGCTTCATTCATTGAAGTCGGCGGACGTACAGGCCTTGG CTACCGCGATACGGCTCAGGATGCAATCTCTGTCCCTCACTCTAATCCTGAAATGACACGTAAACGTATTGTCGATTTAC TACGCGGCCAAGTGAAAGCGGGGTACGGTCTACACTTATTTGATCCTGATTGGTTTGATCCTGAAAAAGCAGACGTTGTT CCATCAAAGTCACCTACGGTTGTTCCTACCCCATCAGATGACGATAAGATCCACTGCATTGAAGATACCTGTTCTGATGA CCATTTATGGATCGTTCCAACTATCATCAAATATGTAATGGAAACCGGTGAACACTCTTTCTTCGACGAAGTGATCCCAT ACGCTGATGGCGGTGACGCAACAGTTTATGAACACATGAAAGCGGCGTTAGATTTCTCTGCAGAATACGTTGGTCGTACT GGTATTTGTAAAGGTTTACGAGCTGACTGGAATGACTGTCTGAACTTAGGTGGTGGCGAATCATCAATGGTTTCATTCTT ACATTTCTGGGCATTAGAAGAATTCTTAGATTTAGCTAAATTCCATAAAAATGATGCCGATATCTCTAAATACTCTGAAA TGGCAGCTAACGTACGTGAAGCGTGTGAAACTCATCTTTGGGATGAAGAAGGCGGTTGGTACATTCGTGGTCTAACCAAA GATGGCGATAAAATTGGTACAGCACAGCAAACTGAAGGTCGTGTTCATCTTGAATCAAACACACTCGCTGTTTTATCTGG TGCGGTATCTCAAGAGCGCGGTGAAAAAGCAATGGATGCGGTAGATGAGAATCTATTCTCTGAATACGGATTACATTTAA ACTCACCATCATTCTCAACACCAAATGATGACATTGGTTTTGTTACTCGCGTTTACCAAGGCGTAAAAGAGAATGGCGCT ATCTTCTCTCACCCAAACCCATGGGCTTGGGTAGCAGAAGCGAAACTAGGTCGTGGTGACCGTGCAATGAAATTCTATGA TGCACTAAATCCATATAACCAAAATGACATGATTGAAAAGCGTATAGCTGAACCATACTCATACGTACAGTTTATCATGG GTAAAGATCATCAAGATCATGGTCGTGCTAATCACCCTTGGTTAACAGGTACTTCTGGTTGGGCTTACTTCGCGGTAACT AACTTTATTCTTGGTGTTCGTGCTGGCTTTGAAGGCTTAACTATTGATCCTTGTATTCCAACTGATTGGCCTGAGTTCTC AGTGAGTCGTCAATGGCGCAGTGCCAGTCCAAGCGGAAGGCAGTGTTAA
Upstream 100 bases:
>100_bases CAAAGTTAAATGGACGATTACCAACCCTAACACGTCAGGGTATTAATTTCCGTCAACCATAAGTCACCCATTTATTAGTA TTTTAGTTAAGGATAAAACA
Downstream 100 bases:
>100_bases TGACGTTATCGTTATTATGGGTTAGTTAGTTTAATCAACGGCCTAATGTAGAGACAAAAGTAAGGAGCTTATAGCAAGCT CCTTACTCTAAAAGGAATTT
Product: chitobiose phosphorylase (glycosyl transferase)
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 762; Mature: 762
Protein sequence:
>762_residues MKYGFFDNDNREYVITRPDVPAPWTNYLGTEKFCTVISHNAGGYSFYNSPEYNRVTKFRPNGTFDRPGHYVYLRDDETGD YWSISWQPVAKSLDEASYEVRHGLSYSKFKCDYNGIEATKTLFVPKGEDAEVWDVVIKNTSDKPRVISAFSFVEFSFSHI QSDNQNHQMSLYSAGTSYTEGVIECDLYYNTNDFEGFYYLASTFDPDLYDGQRDTFLGAYRDEANPIAVEKGQCSNSAQT CYNHCGSLHKQFTIQPGEEVRFAYVLGLGKGNGDRLRKKYQDVANVDAAFQEIKDHWSERCEKFQVKSPNEGLDTMINTW TLYQAETCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPHSNPEMTRKRIVDLLRGQVKAGYGLHLFDPDWFDPEKADVV PSKSPTVVPTPSDDDKIHCIEDTCSDDHLWIVPTIIKYVMETGEHSFFDEVIPYADGGDATVYEHMKAALDFSAEYVGRT GICKGLRADWNDCLNLGGGESSMVSFLHFWALEEFLDLAKFHKNDADISKYSEMAANVREACETHLWDEEGGWYIRGLTK DGDKIGTAQQTEGRVHLESNTLAVLSGAVSQERGEKAMDAVDENLFSEYGLHLNSPSFSTPNDDIGFVTRVYQGVKENGA IFSHPNPWAWVAEAKLGRGDRAMKFYDALNPYNQNDMIEKRIAEPYSYVQFIMGKDHQDHGRANHPWLTGTSGWAYFAVT NFILGVRAGFEGLTIDPCIPTDWPEFSVSRQWRSASPSGRQC
Sequences:
>Translated_762_residues MKYGFFDNDNREYVITRPDVPAPWTNYLGTEKFCTVISHNAGGYSFYNSPEYNRVTKFRPNGTFDRPGHYVYLRDDETGD YWSISWQPVAKSLDEASYEVRHGLSYSKFKCDYNGIEATKTLFVPKGEDAEVWDVVIKNTSDKPRVISAFSFVEFSFSHI QSDNQNHQMSLYSAGTSYTEGVIECDLYYNTNDFEGFYYLASTFDPDLYDGQRDTFLGAYRDEANPIAVEKGQCSNSAQT CYNHCGSLHKQFTIQPGEEVRFAYVLGLGKGNGDRLRKKYQDVANVDAAFQEIKDHWSERCEKFQVKSPNEGLDTMINTW TLYQAETCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPHSNPEMTRKRIVDLLRGQVKAGYGLHLFDPDWFDPEKADVV PSKSPTVVPTPSDDDKIHCIEDTCSDDHLWIVPTIIKYVMETGEHSFFDEVIPYADGGDATVYEHMKAALDFSAEYVGRT GICKGLRADWNDCLNLGGGESSMVSFLHFWALEEFLDLAKFHKNDADISKYSEMAANVREACETHLWDEEGGWYIRGLTK DGDKIGTAQQTEGRVHLESNTLAVLSGAVSQERGEKAMDAVDENLFSEYGLHLNSPSFSTPNDDIGFVTRVYQGVKENGA IFSHPNPWAWVAEAKLGRGDRAMKFYDALNPYNQNDMIEKRIAEPYSYVQFIMGKDHQDHGRANHPWLTGTSGWAYFAVT NFILGVRAGFEGLTIDPCIPTDWPEFSVSRQWRSASPSGRQC >Mature_762_residues MKYGFFDNDNREYVITRPDVPAPWTNYLGTEKFCTVISHNAGGYSFYNSPEYNRVTKFRPNGTFDRPGHYVYLRDDETGD YWSISWQPVAKSLDEASYEVRHGLSYSKFKCDYNGIEATKTLFVPKGEDAEVWDVVIKNTSDKPRVISAFSFVEFSFSHI QSDNQNHQMSLYSAGTSYTEGVIECDLYYNTNDFEGFYYLASTFDPDLYDGQRDTFLGAYRDEANPIAVEKGQCSNSAQT CYNHCGSLHKQFTIQPGEEVRFAYVLGLGKGNGDRLRKKYQDVANVDAAFQEIKDHWSERCEKFQVKSPNEGLDTMINTW TLYQAETCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPHSNPEMTRKRIVDLLRGQVKAGYGLHLFDPDWFDPEKADVV PSKSPTVVPTPSDDDKIHCIEDTCSDDHLWIVPTIIKYVMETGEHSFFDEVIPYADGGDATVYEHMKAALDFSAEYVGRT GICKGLRADWNDCLNLGGGESSMVSFLHFWALEEFLDLAKFHKNDADISKYSEMAANVREACETHLWDEEGGWYIRGLTK DGDKIGTAQQTEGRVHLESNTLAVLSGAVSQERGEKAMDAVDENLFSEYGLHLNSPSFSTPNDDIGFVTRVYQGVKENGA IFSHPNPWAWVAEAKLGRGDRAMKFYDALNPYNQNDMIEKRIAEPYSYVQFIMGKDHQDHGRANHPWLTGTSGWAYFAVT NFILGVRAGFEGLTIDPCIPTDWPEFSVSRQWRSASPSGRQC
Specific function: Involved in the production of beta-(1,2)-glucan. It is involved not only in invasion but also in bacteroid development [H]
COG id: COG3459
COG function: function code G; Cellobiose phosphorylase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To A.tumefaciens ChvB [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008928 - InterPro: IPR009342 - InterPro: IPR019282 - InterPro: IPR021478 - InterPro: IPR011013 - InterPro: IPR010383 - InterPro: IPR010403 [H]
Pfam domain/function: PF06204 CBM_X; PF10091 DUF2329; PF11329 DUF3131; PF06165 Glyco_transf_36; PF06205 GT36_AF [H]
EC number: NA
Molecular weight: Translated: 86213; Mature: 86213
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYGFFDNDNREYVITRPDVPAPWTNYLGTEKFCTVISHNAGGYSFYNSPEYNRVTKFRP CCCCCCCCCCCEEEEECCCCCCCHHHHCCCHHHHHHEECCCCCCCCCCCCCCCCEEEECC NGTFDRPGHYVYLRDDETGDYWSISWQPVAKSLDEASYEVRHGLSYSKFKCDYNGIEATK CCCCCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHCCCHHEEECCCCCCCCEE TLFVPKGEDAEVWDVVIKNTSDKPRVISAFSFVEFSFSHIQSDNQNHQMSLYSAGTSYTE EEEECCCCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC GVIECDLYYNTNDFEGFYYLASTFDPDLYDGQRDTFLGAYRDEANPIAVEKGQCSNSAQT CEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCHHHH CYNHCGSLHKQFTIQPGEEVRFAYVLGLGKGNGDRLRKKYQDVANVDAAFQEIKDHWSER HHHHHHHHHHEEECCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CEKFQVKSPNEGLDTMINTWTLYQAETCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPH HHHEECCCCCCCHHHHHHEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCC SNPEMTRKRIVDLLRGQVKAGYGLHLFDPDWFDPEKADVVPSKSPTVVPTPSDDDKIHCI CCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEE EDTCSDDHLWIVPTIIKYVMETGEHSFFDEVIPYADGGDATVYEHMKAALDFSAEYVGRT ECCCCCCCEEEHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHCCH GICKGLRADWNDCLNLGGGESSMVSFLHFWALEEFLDLAKFHKNDADISKYSEMAANVRE HHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH ACETHLWDEEGGWYIRGLTKDGDKIGTAQQTEGRVHLESNTLAVLSGAVSQERGEKAMDA HHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCEEEHHHHHHHHHHHHHHHH VDENLFSEYGLHLNSPSFSTPNDDIGFVTRVYQGVKENGAIFSHPNPWAWVAEAKLGRGD HHHHHHHHHCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCCCCC RAMKFYDALNPYNQNDMIEKRIAEPYSYVQFIMGKDHQDHGRANHPWLTGTSGWAYFAVT HHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHH NFILGVRAGFEGLTIDPCIPTDWPEFSVSRQWRSASPSGRQC HHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHCCCCCCCCCC >Mature Secondary Structure MKYGFFDNDNREYVITRPDVPAPWTNYLGTEKFCTVISHNAGGYSFYNSPEYNRVTKFRP CCCCCCCCCCCEEEEECCCCCCCHHHHCCCHHHHHHEECCCCCCCCCCCCCCCCEEEECC NGTFDRPGHYVYLRDDETGDYWSISWQPVAKSLDEASYEVRHGLSYSKFKCDYNGIEATK CCCCCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHCCCHHEEECCCCCCCCEE TLFVPKGEDAEVWDVVIKNTSDKPRVISAFSFVEFSFSHIQSDNQNHQMSLYSAGTSYTE EEEECCCCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC GVIECDLYYNTNDFEGFYYLASTFDPDLYDGQRDTFLGAYRDEANPIAVEKGQCSNSAQT CEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCHHHH CYNHCGSLHKQFTIQPGEEVRFAYVLGLGKGNGDRLRKKYQDVANVDAAFQEIKDHWSER HHHHHHHHHHEEECCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CEKFQVKSPNEGLDTMINTWTLYQAETCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPH HHHEECCCCCCCHHHHHHEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCC SNPEMTRKRIVDLLRGQVKAGYGLHLFDPDWFDPEKADVVPSKSPTVVPTPSDDDKIHCI CCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEE EDTCSDDHLWIVPTIIKYVMETGEHSFFDEVIPYADGGDATVYEHMKAALDFSAEYVGRT ECCCCCCCEEEHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHCCH GICKGLRADWNDCLNLGGGESSMVSFLHFWALEEFLDLAKFHKNDADISKYSEMAANVRE HHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH ACETHLWDEEGGWYIRGLTKDGDKIGTAQQTEGRVHLESNTLAVLSGAVSQERGEKAMDA HHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCEEEHHHHHHHHHHHHHHHH VDENLFSEYGLHLNSPSFSTPNDDIGFVTRVYQGVKENGAIFSHPNPWAWVAEAKLGRGD HHHHHHHHHCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCCCCC RAMKFYDALNPYNQNDMIEKRIAEPYSYVQFIMGKDHQDHGRANHPWLTGTSGWAYFAVT HHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHH NFILGVRAGFEGLTIDPCIPTDWPEFSVSRQWRSASPSGRQC HHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2154461; 11481430 [H]