Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is chbP [H]

Identifier: 209696000

GI number: 209696000

Start: 2784878

End: 2787166

Strand: Direct

Name: chbP [H]

Synonym: VSAL_I2584

Alternate gene names: 209696000

Gene position: 2784878-2787166 (Clockwise)

Preceding gene: 209695999

Following gene: 209696001

Centisome position: 83.75

GC content: 42.25

Gene sequence:

>2289_bases
ATGAAATACGGCTTTTTTGATAACGACAATCGCGAATATGTAATTACACGCCCTGACGTACCAGCTCCATGGACGAATTA
TTTAGGCACAGAAAAATTCTGTACCGTTATTTCTCATAATGCTGGCGGTTACTCTTTCTATAATTCTCCAGAGTACAATC
GTGTTACTAAATTCCGTCCAAACGGTACTTTTGACCGTCCAGGGCACTATGTATACCTTCGTGATGATGAAACGGGTGAT
TACTGGTCAATCTCATGGCAGCCAGTAGCAAAAAGCTTAGATGAAGCAAGCTACGAAGTTCGCCACGGCCTTTCTTACTC
TAAATTCAAATGTGATTACAATGGCATTGAAGCCACCAAAACCTTATTTGTTCCAAAGGGTGAAGATGCTGAAGTATGGG
ATGTGGTAATTAAGAATACCAGCGATAAGCCTCGTGTTATCTCTGCATTCTCTTTTGTTGAATTCTCATTCAGCCACATT
CAATCAGATAACCAAAACCATCAAATGTCCTTGTATTCAGCTGGCACTTCTTATACTGAAGGCGTAATTGAATGTGATCT
TTATTACAACACCAATGATTTTGAAGGTTTCTATTACCTAGCATCAACCTTTGATCCTGATTTATATGACGGCCAACGTG
ACACTTTCTTAGGTGCATATCGTGATGAAGCTAATCCAATCGCCGTTGAAAAAGGTCAGTGCTCTAACTCTGCACAAACC
TGTTACAACCATTGTGGTTCACTTCATAAACAATTCACCATTCAACCAGGTGAAGAAGTTCGCTTTGCTTACGTACTTGG
CCTAGGTAAAGGCAATGGCGATCGTCTACGTAAAAAATACCAAGATGTCGCAAATGTTGATGCTGCATTCCAAGAGATCA
AAGATCATTGGAGCGAGCGTTGTGAAAAATTCCAAGTTAAATCACCAAACGAAGGTTTGGATACGATGATCAACACTTGG
ACACTGTATCAAGCAGAAACCTGTGTCGTGTGGTCACGTTTTGCTTCATTCATTGAAGTCGGCGGACGTACAGGCCTTGG
CTACCGCGATACGGCTCAGGATGCAATCTCTGTCCCTCACTCTAATCCTGAAATGACACGTAAACGTATTGTCGATTTAC
TACGCGGCCAAGTGAAAGCGGGGTACGGTCTACACTTATTTGATCCTGATTGGTTTGATCCTGAAAAAGCAGACGTTGTT
CCATCAAAGTCACCTACGGTTGTTCCTACCCCATCAGATGACGATAAGATCCACTGCATTGAAGATACCTGTTCTGATGA
CCATTTATGGATCGTTCCAACTATCATCAAATATGTAATGGAAACCGGTGAACACTCTTTCTTCGACGAAGTGATCCCAT
ACGCTGATGGCGGTGACGCAACAGTTTATGAACACATGAAAGCGGCGTTAGATTTCTCTGCAGAATACGTTGGTCGTACT
GGTATTTGTAAAGGTTTACGAGCTGACTGGAATGACTGTCTGAACTTAGGTGGTGGCGAATCATCAATGGTTTCATTCTT
ACATTTCTGGGCATTAGAAGAATTCTTAGATTTAGCTAAATTCCATAAAAATGATGCCGATATCTCTAAATACTCTGAAA
TGGCAGCTAACGTACGTGAAGCGTGTGAAACTCATCTTTGGGATGAAGAAGGCGGTTGGTACATTCGTGGTCTAACCAAA
GATGGCGATAAAATTGGTACAGCACAGCAAACTGAAGGTCGTGTTCATCTTGAATCAAACACACTCGCTGTTTTATCTGG
TGCGGTATCTCAAGAGCGCGGTGAAAAAGCAATGGATGCGGTAGATGAGAATCTATTCTCTGAATACGGATTACATTTAA
ACTCACCATCATTCTCAACACCAAATGATGACATTGGTTTTGTTACTCGCGTTTACCAAGGCGTAAAAGAGAATGGCGCT
ATCTTCTCTCACCCAAACCCATGGGCTTGGGTAGCAGAAGCGAAACTAGGTCGTGGTGACCGTGCAATGAAATTCTATGA
TGCACTAAATCCATATAACCAAAATGACATGATTGAAAAGCGTATAGCTGAACCATACTCATACGTACAGTTTATCATGG
GTAAAGATCATCAAGATCATGGTCGTGCTAATCACCCTTGGTTAACAGGTACTTCTGGTTGGGCTTACTTCGCGGTAACT
AACTTTATTCTTGGTGTTCGTGCTGGCTTTGAAGGCTTAACTATTGATCCTTGTATTCCAACTGATTGGCCTGAGTTCTC
AGTGAGTCGTCAATGGCGCAGTGCCAGTCCAAGCGGAAGGCAGTGTTAA

Upstream 100 bases:

>100_bases
CAAAGTTAAATGGACGATTACCAACCCTAACACGTCAGGGTATTAATTTCCGTCAACCATAAGTCACCCATTTATTAGTA
TTTTAGTTAAGGATAAAACA

Downstream 100 bases:

>100_bases
TGACGTTATCGTTATTATGGGTTAGTTAGTTTAATCAACGGCCTAATGTAGAGACAAAAGTAAGGAGCTTATAGCAAGCT
CCTTACTCTAAAAGGAATTT

Product: chitobiose phosphorylase (glycosyl transferase)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 762; Mature: 762

Protein sequence:

>762_residues
MKYGFFDNDNREYVITRPDVPAPWTNYLGTEKFCTVISHNAGGYSFYNSPEYNRVTKFRPNGTFDRPGHYVYLRDDETGD
YWSISWQPVAKSLDEASYEVRHGLSYSKFKCDYNGIEATKTLFVPKGEDAEVWDVVIKNTSDKPRVISAFSFVEFSFSHI
QSDNQNHQMSLYSAGTSYTEGVIECDLYYNTNDFEGFYYLASTFDPDLYDGQRDTFLGAYRDEANPIAVEKGQCSNSAQT
CYNHCGSLHKQFTIQPGEEVRFAYVLGLGKGNGDRLRKKYQDVANVDAAFQEIKDHWSERCEKFQVKSPNEGLDTMINTW
TLYQAETCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPHSNPEMTRKRIVDLLRGQVKAGYGLHLFDPDWFDPEKADVV
PSKSPTVVPTPSDDDKIHCIEDTCSDDHLWIVPTIIKYVMETGEHSFFDEVIPYADGGDATVYEHMKAALDFSAEYVGRT
GICKGLRADWNDCLNLGGGESSMVSFLHFWALEEFLDLAKFHKNDADISKYSEMAANVREACETHLWDEEGGWYIRGLTK
DGDKIGTAQQTEGRVHLESNTLAVLSGAVSQERGEKAMDAVDENLFSEYGLHLNSPSFSTPNDDIGFVTRVYQGVKENGA
IFSHPNPWAWVAEAKLGRGDRAMKFYDALNPYNQNDMIEKRIAEPYSYVQFIMGKDHQDHGRANHPWLTGTSGWAYFAVT
NFILGVRAGFEGLTIDPCIPTDWPEFSVSRQWRSASPSGRQC

Sequences:

>Translated_762_residues
MKYGFFDNDNREYVITRPDVPAPWTNYLGTEKFCTVISHNAGGYSFYNSPEYNRVTKFRPNGTFDRPGHYVYLRDDETGD
YWSISWQPVAKSLDEASYEVRHGLSYSKFKCDYNGIEATKTLFVPKGEDAEVWDVVIKNTSDKPRVISAFSFVEFSFSHI
QSDNQNHQMSLYSAGTSYTEGVIECDLYYNTNDFEGFYYLASTFDPDLYDGQRDTFLGAYRDEANPIAVEKGQCSNSAQT
CYNHCGSLHKQFTIQPGEEVRFAYVLGLGKGNGDRLRKKYQDVANVDAAFQEIKDHWSERCEKFQVKSPNEGLDTMINTW
TLYQAETCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPHSNPEMTRKRIVDLLRGQVKAGYGLHLFDPDWFDPEKADVV
PSKSPTVVPTPSDDDKIHCIEDTCSDDHLWIVPTIIKYVMETGEHSFFDEVIPYADGGDATVYEHMKAALDFSAEYVGRT
GICKGLRADWNDCLNLGGGESSMVSFLHFWALEEFLDLAKFHKNDADISKYSEMAANVREACETHLWDEEGGWYIRGLTK
DGDKIGTAQQTEGRVHLESNTLAVLSGAVSQERGEKAMDAVDENLFSEYGLHLNSPSFSTPNDDIGFVTRVYQGVKENGA
IFSHPNPWAWVAEAKLGRGDRAMKFYDALNPYNQNDMIEKRIAEPYSYVQFIMGKDHQDHGRANHPWLTGTSGWAYFAVT
NFILGVRAGFEGLTIDPCIPTDWPEFSVSRQWRSASPSGRQC
>Mature_762_residues
MKYGFFDNDNREYVITRPDVPAPWTNYLGTEKFCTVISHNAGGYSFYNSPEYNRVTKFRPNGTFDRPGHYVYLRDDETGD
YWSISWQPVAKSLDEASYEVRHGLSYSKFKCDYNGIEATKTLFVPKGEDAEVWDVVIKNTSDKPRVISAFSFVEFSFSHI
QSDNQNHQMSLYSAGTSYTEGVIECDLYYNTNDFEGFYYLASTFDPDLYDGQRDTFLGAYRDEANPIAVEKGQCSNSAQT
CYNHCGSLHKQFTIQPGEEVRFAYVLGLGKGNGDRLRKKYQDVANVDAAFQEIKDHWSERCEKFQVKSPNEGLDTMINTW
TLYQAETCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPHSNPEMTRKRIVDLLRGQVKAGYGLHLFDPDWFDPEKADVV
PSKSPTVVPTPSDDDKIHCIEDTCSDDHLWIVPTIIKYVMETGEHSFFDEVIPYADGGDATVYEHMKAALDFSAEYVGRT
GICKGLRADWNDCLNLGGGESSMVSFLHFWALEEFLDLAKFHKNDADISKYSEMAANVREACETHLWDEEGGWYIRGLTK
DGDKIGTAQQTEGRVHLESNTLAVLSGAVSQERGEKAMDAVDENLFSEYGLHLNSPSFSTPNDDIGFVTRVYQGVKENGA
IFSHPNPWAWVAEAKLGRGDRAMKFYDALNPYNQNDMIEKRIAEPYSYVQFIMGKDHQDHGRANHPWLTGTSGWAYFAVT
NFILGVRAGFEGLTIDPCIPTDWPEFSVSRQWRSASPSGRQC

Specific function: Involved in the production of beta-(1,2)-glucan. It is involved not only in invasion but also in bacteroid development [H]

COG id: COG3459

COG function: function code G; Cellobiose phosphorylase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.tumefaciens ChvB [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008928
- InterPro:   IPR009342
- InterPro:   IPR019282
- InterPro:   IPR021478
- InterPro:   IPR011013
- InterPro:   IPR010383
- InterPro:   IPR010403 [H]

Pfam domain/function: PF06204 CBM_X; PF10091 DUF2329; PF11329 DUF3131; PF06165 Glyco_transf_36; PF06205 GT36_AF [H]

EC number: NA

Molecular weight: Translated: 86213; Mature: 86213

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYGFFDNDNREYVITRPDVPAPWTNYLGTEKFCTVISHNAGGYSFYNSPEYNRVTKFRP
CCCCCCCCCCCEEEEECCCCCCCHHHHCCCHHHHHHEECCCCCCCCCCCCCCCCEEEECC
NGTFDRPGHYVYLRDDETGDYWSISWQPVAKSLDEASYEVRHGLSYSKFKCDYNGIEATK
CCCCCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHCCCHHEEECCCCCCCCEE
TLFVPKGEDAEVWDVVIKNTSDKPRVISAFSFVEFSFSHIQSDNQNHQMSLYSAGTSYTE
EEEECCCCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC
GVIECDLYYNTNDFEGFYYLASTFDPDLYDGQRDTFLGAYRDEANPIAVEKGQCSNSAQT
CEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCHHHH
CYNHCGSLHKQFTIQPGEEVRFAYVLGLGKGNGDRLRKKYQDVANVDAAFQEIKDHWSER
HHHHHHHHHHEEECCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CEKFQVKSPNEGLDTMINTWTLYQAETCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPH
HHHEECCCCCCCHHHHHHEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCC
SNPEMTRKRIVDLLRGQVKAGYGLHLFDPDWFDPEKADVVPSKSPTVVPTPSDDDKIHCI
CCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEE
EDTCSDDHLWIVPTIIKYVMETGEHSFFDEVIPYADGGDATVYEHMKAALDFSAEYVGRT
ECCCCCCCEEEHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHCCH
GICKGLRADWNDCLNLGGGESSMVSFLHFWALEEFLDLAKFHKNDADISKYSEMAANVRE
HHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
ACETHLWDEEGGWYIRGLTKDGDKIGTAQQTEGRVHLESNTLAVLSGAVSQERGEKAMDA
HHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCEEEHHHHHHHHHHHHHHHH
VDENLFSEYGLHLNSPSFSTPNDDIGFVTRVYQGVKENGAIFSHPNPWAWVAEAKLGRGD
HHHHHHHHHCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCCCCC
RAMKFYDALNPYNQNDMIEKRIAEPYSYVQFIMGKDHQDHGRANHPWLTGTSGWAYFAVT
HHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHH
NFILGVRAGFEGLTIDPCIPTDWPEFSVSRQWRSASPSGRQC
HHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKYGFFDNDNREYVITRPDVPAPWTNYLGTEKFCTVISHNAGGYSFYNSPEYNRVTKFRP
CCCCCCCCCCCEEEEECCCCCCCHHHHCCCHHHHHHEECCCCCCCCCCCCCCCCEEEECC
NGTFDRPGHYVYLRDDETGDYWSISWQPVAKSLDEASYEVRHGLSYSKFKCDYNGIEATK
CCCCCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHCCCHHEEECCCCCCCCEE
TLFVPKGEDAEVWDVVIKNTSDKPRVISAFSFVEFSFSHIQSDNQNHQMSLYSAGTSYTE
EEEECCCCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC
GVIECDLYYNTNDFEGFYYLASTFDPDLYDGQRDTFLGAYRDEANPIAVEKGQCSNSAQT
CEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCHHHH
CYNHCGSLHKQFTIQPGEEVRFAYVLGLGKGNGDRLRKKYQDVANVDAAFQEIKDHWSER
HHHHHHHHHHEEECCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CEKFQVKSPNEGLDTMINTWTLYQAETCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPH
HHHEECCCCCCCHHHHHHEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCC
SNPEMTRKRIVDLLRGQVKAGYGLHLFDPDWFDPEKADVVPSKSPTVVPTPSDDDKIHCI
CCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEE
EDTCSDDHLWIVPTIIKYVMETGEHSFFDEVIPYADGGDATVYEHMKAALDFSAEYVGRT
ECCCCCCCEEEHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHCCH
GICKGLRADWNDCLNLGGGESSMVSFLHFWALEEFLDLAKFHKNDADISKYSEMAANVRE
HHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
ACETHLWDEEGGWYIRGLTKDGDKIGTAQQTEGRVHLESNTLAVLSGAVSQERGEKAMDA
HHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCEEEHHHHHHHHHHHHHHHH
VDENLFSEYGLHLNSPSFSTPNDDIGFVTRVYQGVKENGAIFSHPNPWAWVAEAKLGRGD
HHHHHHHHHCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCCCCC
RAMKFYDALNPYNQNDMIEKRIAEPYSYVQFIMGKDHQDHGRANHPWLTGTSGWAYFAVT
HHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHH
NFILGVRAGFEGLTIDPCIPTDWPEFSVSRQWRSASPSGRQC
HHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2154461; 11481430 [H]