| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is appF [H]
Identifier: 209695996
GI number: 209695996
Start: 2779271
End: 2780266
Strand: Direct
Name: appF [H]
Synonym: VSAL_I2580
Alternate gene names: 209695996
Gene position: 2779271-2780266 (Clockwise)
Preceding gene: 209695995
Following gene: 209695997
Centisome position: 83.58
GC content: 40.86
Gene sequence:
>996_bases ATGAGCAAACCACTTGGCAAACTATTAGTTGAAGGTAAAAATCTAGTAAAAGATTTCCCTATCAGCAGTAACGCACTCAA ACAACCAATGATGCGTGCAATTAATGACGTATCTTTCAAAATGTACAAAAGCCGTGGCTTATCTGTTGTTGGTGAATCTG GATCAGGTAAATCTACAACAGCAAAAATGATCGCAAAAATGTATGCGCCAACAGACGGTCTTATCGAGTATAAAGGCCGC GACATCCAGGATATCGTCAAGAAAAACGATCTAATGGCTTACCGTGAAGGCGTGCAAATGGTATGGCAAGACCCATTTGG ATCTCTAAACCCTACCCATAACATCTTTCACCATATTGCTCGACCACTGCTTATCCATAAGAAAATAGACCCTAGAAACA AACAAGAGTTACAAGAACGCGTTTTCGATCTTTTAGATCAGGTCGGCCTAAATCCACCAAAAGAAACATCAGAAAAATAC CCACATCAACTTTCTGGTGGTCAACGTCAACGTGTGAATTTAGCTCGTAATATTGCAGTAGGTGCAGAAGTTGTTCTGGC TGATGAACCAACATCAATGCTTGATGTATCTATCCGTGCTGGTGTACTTAACCTGATGGAAGAAATGAAGTTTGAGAAAG AAATGTCTCTACTTTATATCACTCACGATATCGCGACAGCACGTTACATCGCGGAAGATCTCGCGGTAATGTACGTTGGG CATATGGTTGAATGGGGCGATACCGATGAGATCATCCATGATCCTCAACACCCATATACACAATTATTAGTTTCTGCTGT ACCCGATCCAAGCAAGTCGATTCATACCAAACTGAAAGGAAATAAAGGGAAAATCCCTCTTTGGACTCCAGAATCAGTAG GTTGTCCTTTTGCTGGGCGTTGTACTCATGTAACTGAAAAATGTAAAGAACGTATGCCTGGCGTAACAAAACTGTCAGAC AACCATTTTGTTCGTTGTTACTTGTTCGAAAATTAA
Upstream 100 bases:
>100_bases AATTACGTCAGATTGAAATTGGCCACTTATCTAATTGTCATCTATACGGTGATCCAATTAGACAAGCAAAAGCATAATAA CGGATTATCTGGAGTAAATT
Downstream 100 bases:
>100_bases TTTCACACAAGTTAACCTCAAACAGCAGTAATTGGTATTTTGGAGAAATAGATGCAACTGTTAACAAACCACATTGGATA TGAACATAATGGACCTAAAT
Product: ABC transporter ATP-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 331; Mature: 330
Protein sequence:
>331_residues MSKPLGKLLVEGKNLVKDFPISSNALKQPMMRAINDVSFKMYKSRGLSVVGESGSGKSTTAKMIAKMYAPTDGLIEYKGR DIQDIVKKNDLMAYREGVQMVWQDPFGSLNPTHNIFHHIARPLLIHKKIDPRNKQELQERVFDLLDQVGLNPPKETSEKY PHQLSGGQRQRVNLARNIAVGAEVVLADEPTSMLDVSIRAGVLNLMEEMKFEKEMSLLYITHDIATARYIAEDLAVMYVG HMVEWGDTDEIIHDPQHPYTQLLVSAVPDPSKSIHTKLKGNKGKIPLWTPESVGCPFAGRCTHVTEKCKERMPGVTKLSD NHFVRCYLFEN
Sequences:
>Translated_331_residues MSKPLGKLLVEGKNLVKDFPISSNALKQPMMRAINDVSFKMYKSRGLSVVGESGSGKSTTAKMIAKMYAPTDGLIEYKGR DIQDIVKKNDLMAYREGVQMVWQDPFGSLNPTHNIFHHIARPLLIHKKIDPRNKQELQERVFDLLDQVGLNPPKETSEKY PHQLSGGQRQRVNLARNIAVGAEVVLADEPTSMLDVSIRAGVLNLMEEMKFEKEMSLLYITHDIATARYIAEDLAVMYVG HMVEWGDTDEIIHDPQHPYTQLLVSAVPDPSKSIHTKLKGNKGKIPLWTPESVGCPFAGRCTHVTEKCKERMPGVTKLSD NHFVRCYLFEN >Mature_330_residues SKPLGKLLVEGKNLVKDFPISSNALKQPMMRAINDVSFKMYKSRGLSVVGESGSGKSTTAKMIAKMYAPTDGLIEYKGRD IQDIVKKNDLMAYREGVQMVWQDPFGSLNPTHNIFHHIARPLLIHKKIDPRNKQELQERVFDLLDQVGLNPPKETSEKYP HQLSGGQRQRVNLARNIAVGAEVVLADEPTSMLDVSIRAGVLNLMEEMKFEKEMSLLYITHDIATARYIAEDLAVMYVGH MVEWGDTDEIIHDPQHPYTQLLVSAVPDPSKSIHTKLKGNKGKIPLWTPESVGCPFAGRCTHVTEKCKERMPGVTKLSDN HFVRCYLFEN
Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin
COG id: COG4608
COG function: function code E; ABC-type oligopeptide transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI105990541, Length=234, Percent_Identity=26.9230769230769, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI42490749, Length=242, Percent_Identity=27.2727272727273, Blast_Score=83, Evalue=4e-16, Organism=Homo sapiens, GI116734710, Length=213, Percent_Identity=24.4131455399061, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI255708477, Length=314, Percent_Identity=22.6114649681529, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI9961252, Length=228, Percent_Identity=28.5087719298246, Blast_Score=76, Evalue=5e-14, Organism=Homo sapiens, GI4505771, Length=228, Percent_Identity=28.5087719298246, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI9961250, Length=228, Percent_Identity=28.5087719298246, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI21536376, Length=245, Percent_Identity=22.8571428571429, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI171184400, Length=242, Percent_Identity=26.8595041322314, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI21536378, Length=243, Percent_Identity=25.5144032921811, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI47078218, Length=216, Percent_Identity=21.7592592592593, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI45446740, Length=216, Percent_Identity=21.7592592592593, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI150417984, Length=235, Percent_Identity=25.531914893617, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1787500, Length=327, Percent_Identity=38.2262996941896, Blast_Score=216, Evalue=2e-57, Organism=Escherichia coli, GI1789962, Length=323, Percent_Identity=35.9133126934984, Blast_Score=215, Evalue=4e-57, Organism=Escherichia coli, GI1789963, Length=308, Percent_Identity=35.7142857142857, Blast_Score=199, Evalue=2e-52, Organism=Escherichia coli, GI145693107, Length=271, Percent_Identity=39.1143911439114, Blast_Score=195, Evalue=4e-51, Organism=Escherichia coli, GI1787758, Length=312, Percent_Identity=33.6538461538462, Blast_Score=183, Evalue=1e-47, Organism=Escherichia coli, GI48994883, Length=301, Percent_Identity=33.2225913621262, Blast_Score=176, Evalue=2e-45, Organism=Escherichia coli, GI1787759, Length=303, Percent_Identity=32.6732673267327, Blast_Score=166, Evalue=2e-42, Organism=Escherichia coli, GI1788506, Length=253, Percent_Identity=35.5731225296443, Blast_Score=154, Evalue=5e-39, Organism=Escherichia coli, GI1787547, Length=258, Percent_Identity=31.7829457364341, Blast_Score=149, Evalue=2e-37, Organism=Escherichia coli, GI48994997, Length=236, Percent_Identity=34.3220338983051, Blast_Score=138, Evalue=5e-34, Organism=Escherichia coli, GI1787548, Length=330, Percent_Identity=26.3636363636364, Blast_Score=133, Evalue=2e-32, Organism=Escherichia coli, GI1786398, Length=236, Percent_Identity=30.5084745762712, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1789032, Length=245, Percent_Identity=30.2040816326531, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1789891, Length=211, Percent_Identity=31.2796208530806, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI1789890, Length=239, Percent_Identity=30.5439330543933, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI1788225, Length=259, Percent_Identity=32.4324324324324, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI87081791, Length=239, Percent_Identity=32.6359832635983, Blast_Score=108, Evalue=7e-25, Organism=Escherichia coli, GI1787029, Length=249, Percent_Identity=31.3253012048193, Blast_Score=104, Evalue=1e-23, Organism=Escherichia coli, GI1788761, Length=224, Percent_Identity=29.9107142857143, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI1786872, Length=226, Percent_Identity=34.5132743362832, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI87081834, Length=230, Percent_Identity=29.1304347826087, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1788450, Length=232, Percent_Identity=28.8793103448276, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1789873, Length=193, Percent_Identity=34.1968911917098, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1790162, Length=236, Percent_Identity=29.2372881355932, Blast_Score=98, Evalue=8e-22, Organism=Escherichia coli, GI1787089, Length=229, Percent_Identity=29.2576419213974, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1788644, Length=216, Percent_Identity=30.0925925925926, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI87081709, Length=250, Percent_Identity=27.6, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1789672, Length=242, Percent_Identity=28.099173553719, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1787712, Length=263, Percent_Identity=26.2357414448669, Blast_Score=88, Evalue=9e-19, Organism=Escherichia coli, GI1786253, Length=218, Percent_Identity=29.3577981651376, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1786698, Length=194, Percent_Identity=29.3814432989691, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI1787370, Length=221, Percent_Identity=27.6018099547511, Blast_Score=85, Evalue=7e-18, Organism=Escherichia coli, GI1787105, Length=220, Percent_Identity=27.2727272727273, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1790467, Length=275, Percent_Identity=25.4545454545455, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1786563, Length=209, Percent_Identity=31.1004784688995, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI87082267, Length=240, Percent_Identity=29.5833333333333, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI1788210, Length=227, Percent_Identity=28.1938325991189, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786803, Length=205, Percent_Identity=28.2926829268293, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1786703, Length=194, Percent_Identity=28.3505154639175, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1790739, Length=225, Percent_Identity=25.7777777777778, Blast_Score=75, Evalue=8e-15, Organism=Escherichia coli, GI1786345, Length=240, Percent_Identity=25.8333333333333, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1790534, Length=230, Percent_Identity=28.695652173913, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1790525, Length=226, Percent_Identity=26.1061946902655, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1787164, Length=209, Percent_Identity=26.7942583732057, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1787792, Length=251, Percent_Identity=24.7011952191235, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI1788165, Length=225, Percent_Identity=25.7777777777778, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI1789586, Length=231, Percent_Identity=26.8398268398268, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787112, Length=226, Percent_Identity=26.9911504424779, Blast_Score=62, Evalue=6e-11, Organism=Caenorhabditis elegans, GI193208177, Length=238, Percent_Identity=27.7310924369748, Blast_Score=89, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17565938, Length=256, Percent_Identity=26.5625, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI212646699, Length=223, Percent_Identity=29.5964125560538, Blast_Score=78, Evalue=7e-15, Organism=Caenorhabditis elegans, GI193209708, Length=230, Percent_Identity=30, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17543740, Length=236, Percent_Identity=28.8135593220339, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI115534520, Length=230, Percent_Identity=26.9565217391304, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI115533608, Length=209, Percent_Identity=25.3588516746411, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193211015, Length=230, Percent_Identity=26.9565217391304, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193211017, Length=230, Percent_Identity=26.9565217391304, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI71996809, Length=230, Percent_Identity=26.9565217391304, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI115535101, Length=227, Percent_Identity=27.3127753303965, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17533971, Length=233, Percent_Identity=27.0386266094421, Blast_Score=72, Evalue=5e-13, Organism=Caenorhabditis elegans, GI71992285, Length=232, Percent_Identity=26.2931034482759, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI193202349, Length=226, Percent_Identity=24.7787610619469, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17567265, Length=233, Percent_Identity=25.7510729613734, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI25146777, Length=227, Percent_Identity=25.1101321585903, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17567269, Length=236, Percent_Identity=26.6949152542373, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17558664, Length=209, Percent_Identity=26.3157894736842, Blast_Score=65, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6322640, Length=252, Percent_Identity=26.5873015873016, Blast_Score=74, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6321752, Length=251, Percent_Identity=25.0996015936255, Blast_Score=64, Evalue=4e-11, Organism=Drosophila melanogaster, GI24659289, Length=246, Percent_Identity=27.2357723577236, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI116007184, Length=223, Percent_Identity=26.0089686098655, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI221500365, Length=223, Percent_Identity=26.0089686098655, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24643674, Length=213, Percent_Identity=23.0046948356808, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 37283; Mature: 37151
Theoretical pI: Translated: 8.57; Mature: 8.57
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKPLGKLLVEGKNLVKDFPISSNALKQPMMRAINDVSFKMYKSRGLSVVGESGSGKSTT CCCCHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHH AKMIAKMYAPTDGLIEYKGRDIQDIVKKNDLMAYREGVQMVWQDPFGSLNPTHNIFHHIA HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHH RPLLIHKKIDPRNKQELQERVFDLLDQVGLNPPKETSEKYPHQLSGGQRQRVNLARNIAV HHHHEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHCCCCHHHHHHHHHHHC GAEVVLADEPTSMLDVSIRAGVLNLMEEMKFEKEMSLLYITHDIATARYIAEDLAVMYVG CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHH HMVEWGDTDEIIHDPQHPYTQLLVSAVPDPSKSIHTKLKGNKGKIPLWTPESVGCPFAGR HHHCCCCCHHHHCCCCCHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEECCCCCCCCCCCC CTHVTEKCKERMPGVTKLSDNHFVRCYLFEN HHHHHHHHHHHCCCCEEECCCCEEEEEEECC >Mature Secondary Structure SKPLGKLLVEGKNLVKDFPISSNALKQPMMRAINDVSFKMYKSRGLSVVGESGSGKSTT CCCHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHH AKMIAKMYAPTDGLIEYKGRDIQDIVKKNDLMAYREGVQMVWQDPFGSLNPTHNIFHHIA HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHH RPLLIHKKIDPRNKQELQERVFDLLDQVGLNPPKETSEKYPHQLSGGQRQRVNLARNIAV HHHHEECCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHCCCCHHHHHHHHHHHC GAEVVLADEPTSMLDVSIRAGVLNLMEEMKFEKEMSLLYITHDIATARYIAEDLAVMYVG CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHH HMVEWGDTDEIIHDPQHPYTQLLVSAVPDPSKSIHTKLKGNKGKIPLWTPESVGCPFAGR HHHCCCCCHHHHCCCCCHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEECCCCCCCCCCCC CTHVTEKCKERMPGVTKLSDNHFVRCYLFEN HHHHHHHHHHHCCCCEEECCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7997159; 9384377 [H]