| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695997
Identifier: 209695997
GI number: 209695997
Start: 2780318
End: 2782045
Strand: Direct
Name: 209695997
Synonym: VSAL_I2581
Alternate gene names: NA
Gene position: 2780318-2782045 (Clockwise)
Preceding gene: 209695996
Following gene: 209695998
Centisome position: 83.61
GC content: 37.73
Gene sequence:
>1728_bases ATGCAACTGTTAACAAACCACATTGGATATGAACATAATGGACCTAAATCAGCCGTATTATTAACTGATTCACCTCTTAA TAAAGAGTTATTAGGCAACCTTATTTGTACTCAAACACAGCAGGTAAAACATCAGTTTTCTATTTCTTCATCACTCCAAA TTGCTAAATGGCATCAAGGGTATTTTGCAGAGATTGATTTCTCAGACTTTAATCAACAAGGTAAGTTTATTCTCACGATT AATGACAGTAAATCACACCCTTTTACCATTGGTACTCATTTACTGATGAAAAACACGTTTTCTGATGTTTTACATTATTT TAAGTCTCAACGTTGTAGTGGTATTTTTGATAAACAAGATAAAAAAAAACCTATCATCAATAGCAAAGAAACCATTGATG TTCATGGTGGTTGGTATGACGCATCGGGTGATGTCAGTAAGTATTTAAGCCACTTATCTTACGCTAATTATTTAAACCCT CAGCAAATCCCAATGGTTGTATGGAATATGCTTAAAGGCTTAGAGTTAACTCAAAACCTATCGGATTTTGCTGCATTCTC TCGCACTCGTCTTACGGAAGAGGCGTTATTTGGTGCTGACTTCTTAGTTCGTATGCAAAGTCCGGAAGGTTTCTTCTATA TGACGGTTTTTGATAAATGGAGTAAAGATATAACTCAACGAGATATCTGTGCTTATTCAACTCAAAATGGTCATAAGTCT GATGATTATCAAGCTGGTTTTCGTCAAGGTGGTGGTATATCCATTGCAGCTCTTGCGGCTGCTTCTCGTTTAAGTACTGA AGGTGAATTTACTCACGACGAGTATTTAAGCGCAGCAGTTAAAGGCTATTGGCACTTAAAAGAAAACAATCTCAATTACT TGAATAACGGTGAAGAAAATATTATTGATGAATATTGCGCTCTTCTTGCTGTTATCGAACTGTTCAAAACAACCCAAAAT AACGCTTTCTTAATTGAAGCTCGTGTATGGGCTGAAAGATTATCTGCTCGCCAACTAAGTGATGAAAATCAAAATAATTT CTGGTCTGCAACTAAAAATGGAGAGCGTCCTTATTACCATGCGGCTGAAGCGGGTCTTCCTGCAATTGCGCTTTCTCAAT ACCTCGACATTGAAACGGATAATAGTCGCCGAGCAAAGACTCAACTGACAATAACTCAAGCCGTTCAATTTGAACTGACA ATAACATCAGAAGTCAGTAACCCTTTTGGCTATCCTCGCCAATATGTAAAACCAGTAAATGATAATAAACGCAGTTCTTT TTTTGTCGCCCACGACAATGAATCGGGCTATTGGTGGCAAGGTGAAAATGCACGTTTAGGCTCTTTGGCAAGCATGAGTT ACTTAGCTCTCCCTTATATCACCTCTAAAAATACGGTACAAAAACTCGAATGCTTTGCTCAACAAAATTTAAATTGGGTA TTAGGTTTAAATCCTTATGACATGTGCATGTTAGATGGTCATGGACATAACAATCCAGATTACCTTCCTCATCTTGGGTT CTTTAATGCTAAAGGTGGTGTATGTAACGGGATTACTGGTGGATTTGAAGATGAAGACGATATTGCGTTTAATCCAGTCC CACACGGTGATGACATGTTACAAAACTGGCGTTGGGGAGAGCAATGGATCCCTCACGGTGCATGGTACCTACTGGCGATT TTATCTCAATATTCTTATCAATCAATGCAGGTAAATAATAATGACTGA
Upstream 100 bases:
>100_bases AAAACTGTCAGACAACCATTTTGTTCGTTGTTACTTGTTCGAAAATTAATTTCACACAAGTTAACCTCAAACAGCAGTAA TTGGTATTTTGGAGAAATAG
Downstream 100 bases:
>100_bases TCTGTATGTAGGTATTGATGGTGGCGGTACATCTTGTCGTGCTCGAATTCGCAATAAACAAGGCGAATTACTTGGTGAAG CTAGGAGTGGCAGTGCGAAT
Product: chitobiase (exoglucosidase)
Products: beta-D-Gal-(1->3)-D-GlcNAc; beta-D-Gal-(1->4)-D-Glc; lacto-N-biose; lactose
Alternate protein names: Endoglucanase-Related Protein; Endoglucanase-Like Protein; Chitobiase; Glycoside Hydrolase Family Protein; Endoglucanase; Glucosamine-Link Cellobiase; Beta-Glycosidase-Like Protein; Glycosy Hydrolase Family Protein
Number of amino acids: Translated: 575; Mature: 575
Protein sequence:
>575_residues MQLLTNHIGYEHNGPKSAVLLTDSPLNKELLGNLICTQTQQVKHQFSISSSLQIAKWHQGYFAEIDFSDFNQQGKFILTI NDSKSHPFTIGTHLLMKNTFSDVLHYFKSQRCSGIFDKQDKKKPIINSKETIDVHGGWYDASGDVSKYLSHLSYANYLNP QQIPMVVWNMLKGLELTQNLSDFAAFSRTRLTEEALFGADFLVRMQSPEGFFYMTVFDKWSKDITQRDICAYSTQNGHKS DDYQAGFRQGGGISIAALAAASRLSTEGEFTHDEYLSAAVKGYWHLKENNLNYLNNGEENIIDEYCALLAVIELFKTTQN NAFLIEARVWAERLSARQLSDENQNNFWSATKNGERPYYHAAEAGLPAIALSQYLDIETDNSRRAKTQLTITQAVQFELT ITSEVSNPFGYPRQYVKPVNDNKRSSFFVAHDNESGYWWQGENARLGSLASMSYLALPYITSKNTVQKLECFAQQNLNWV LGLNPYDMCMLDGHGHNNPDYLPHLGFFNAKGGVCNGITGGFEDEDDIAFNPVPHGDDMLQNWRWGEQWIPHGAWYLLAI LSQYSYQSMQVNNND
Sequences:
>Translated_575_residues MQLLTNHIGYEHNGPKSAVLLTDSPLNKELLGNLICTQTQQVKHQFSISSSLQIAKWHQGYFAEIDFSDFNQQGKFILTI NDSKSHPFTIGTHLLMKNTFSDVLHYFKSQRCSGIFDKQDKKKPIINSKETIDVHGGWYDASGDVSKYLSHLSYANYLNP QQIPMVVWNMLKGLELTQNLSDFAAFSRTRLTEEALFGADFLVRMQSPEGFFYMTVFDKWSKDITQRDICAYSTQNGHKS DDYQAGFRQGGGISIAALAAASRLSTEGEFTHDEYLSAAVKGYWHLKENNLNYLNNGEENIIDEYCALLAVIELFKTTQN NAFLIEARVWAERLSARQLSDENQNNFWSATKNGERPYYHAAEAGLPAIALSQYLDIETDNSRRAKTQLTITQAVQFELT ITSEVSNPFGYPRQYVKPVNDNKRSSFFVAHDNESGYWWQGENARLGSLASMSYLALPYITSKNTVQKLECFAQQNLNWV LGLNPYDMCMLDGHGHNNPDYLPHLGFFNAKGGVCNGITGGFEDEDDIAFNPVPHGDDMLQNWRWGEQWIPHGAWYLLAI LSQYSYQSMQVNNND >Mature_575_residues MQLLTNHIGYEHNGPKSAVLLTDSPLNKELLGNLICTQTQQVKHQFSISSSLQIAKWHQGYFAEIDFSDFNQQGKFILTI NDSKSHPFTIGTHLLMKNTFSDVLHYFKSQRCSGIFDKQDKKKPIINSKETIDVHGGWYDASGDVSKYLSHLSYANYLNP QQIPMVVWNMLKGLELTQNLSDFAAFSRTRLTEEALFGADFLVRMQSPEGFFYMTVFDKWSKDITQRDICAYSTQNGHKS DDYQAGFRQGGGISIAALAAASRLSTEGEFTHDEYLSAAVKGYWHLKENNLNYLNNGEENIIDEYCALLAVIELFKTTQN NAFLIEARVWAERLSARQLSDENQNNFWSATKNGERPYYHAAEAGLPAIALSQYLDIETDNSRRAKTQLTITQAVQFELT ITSEVSNPFGYPRQYVKPVNDNKRSSFFVAHDNESGYWWQGENARLGSLASMSYLALPYITSKNTVQKLECFAQQNLNWV LGLNPYDMCMLDGHGHNNPDYLPHLGFFNAKGGVCNGITGGFEDEDDIAFNPVPHGDDMLQNWRWGEQWIPHGAWYLLAI LSQYSYQSMQVNNND
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 3.2.1.14
Molecular weight: Translated: 65314; Mature: 65314
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQLLTNHIGYEHNGPKSAVLLTDSPLNKELLGNLICTQTQQVKHQFSISSSLQIAKWHQG CCCHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHCCCCCCEEEEECCC YFAEIDFSDFNQQGKFILTINDSKSHPFTIGTHLLMKNTFSDVLHYFKSQRCSGIFDKQD EEEEEEHHCCCCCCCEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC KKKPIINSKETIDVHGGWYDASGDVSKYLSHLSYANYLNPQQIPMVVWNMLKGLELTQNL CCCCCCCCCCEEEECCCEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHCH SDFAAFSRTRLTEEALFGADFLVRMQSPEGFFYMTVFDKWSKDITQRDICAYSTQNGHKS HHHHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEEECHHHHHHHHHHHHEECCCCCCCC DDYQAGFRQGGGISIAALAAASRLSTEGEFTHDEYLSAAVKGYWHLKENNLNYLNNGEEN CCHHHHHCCCCCEEEHHHHHHHHCCCCCCCCHHHHHHHHHHHEEEEECCCCCCCCCCHHH IIDEYCALLAVIELFKTTQNNAFLIEARVWAERLSARQLSDENQNNFWSATKNGERPYYH HHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE AAEAGLPAIALSQYLDIETDNSRRAKTQLTITQAVQFELTITSEVSNPFGYPRQYVKPVN HHHCCCCHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCHHHHCCCC DNKRSSFFVAHDNESGYWWQGENARLGSLASMSYLALPYITSKNTVQKLECFAQQNLNWV CCCCCEEEEEECCCCCCEECCCCCCCCCHHHHHHHEEEEECCCCHHHHHHHHHHCCCCEE LGLNPYDMCMLDGHGHNNPDYLPHLGFFNAKGGVCNGITGGFEDEDDIAFNPVPHGDDML EECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHH QNWRWGEQWIPHGAWYLLAILSQYSYQSMQVNNND HCCCCCHHHCCCHHHHHHHHHHHHCCCEEEECCCC >Mature Secondary Structure MQLLTNHIGYEHNGPKSAVLLTDSPLNKELLGNLICTQTQQVKHQFSISSSLQIAKWHQG CCCHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHCCCCCCEEEEECCC YFAEIDFSDFNQQGKFILTINDSKSHPFTIGTHLLMKNTFSDVLHYFKSQRCSGIFDKQD EEEEEEHHCCCCCCCEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC KKKPIINSKETIDVHGGWYDASGDVSKYLSHLSYANYLNPQQIPMVVWNMLKGLELTQNL CCCCCCCCCCEEEECCCEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHCH SDFAAFSRTRLTEEALFGADFLVRMQSPEGFFYMTVFDKWSKDITQRDICAYSTQNGHKS HHHHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEEECHHHHHHHHHHHHEECCCCCCCC DDYQAGFRQGGGISIAALAAASRLSTEGEFTHDEYLSAAVKGYWHLKENNLNYLNNGEEN CCHHHHHCCCCCEEEHHHHHHHHCCCCCCCCHHHHHHHHHHHEEEEECCCCCCCCCCHHH IIDEYCALLAVIELFKTTQNNAFLIEARVWAERLSARQLSDENQNNFWSATKNGERPYYH HHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE AAEAGLPAIALSQYLDIETDNSRRAKTQLTITQAVQFELTITSEVSNPFGYPRQYVKPVN HHHCCCCHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCHHHHCCCC DNKRSSFFVAHDNESGYWWQGENARLGSLASMSYLALPYITSKNTVQKLECFAQQNLNWV CCCCCEEEEEECCCCCCEECCCCCCCCCHHHHHHHEEEEECCCCHHHHHHHHHHCCCCEE LGLNPYDMCMLDGHGHNNPDYLPHLGFFNAKGGVCNGITGGFEDEDDIAFNPVPHGDDML EECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHH QNWRWGEQWIPHGAWYLLAILSQYSYQSMQVNNND HCCCCCHHHCCCHHHHHHHHHHHHCCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: beta-D-Gal-(1->3)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-D-Glc; H2O; lacto-N-tetraose
Specific reaction: (1) beta-D-Gal-(1->3)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-D-Glc + H2O = beta-D-Gal-(1->3)-D-GlcNAc + beta-D-Gal-(1->4)-D-Glc; (2) lacto-N-tetraose + H2O = lacto-N-biose + lactose
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA