Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695997

Identifier: 209695997

GI number: 209695997

Start: 2780318

End: 2782045

Strand: Direct

Name: 209695997

Synonym: VSAL_I2581

Alternate gene names: NA

Gene position: 2780318-2782045 (Clockwise)

Preceding gene: 209695996

Following gene: 209695998

Centisome position: 83.61

GC content: 37.73

Gene sequence:

>1728_bases
ATGCAACTGTTAACAAACCACATTGGATATGAACATAATGGACCTAAATCAGCCGTATTATTAACTGATTCACCTCTTAA
TAAAGAGTTATTAGGCAACCTTATTTGTACTCAAACACAGCAGGTAAAACATCAGTTTTCTATTTCTTCATCACTCCAAA
TTGCTAAATGGCATCAAGGGTATTTTGCAGAGATTGATTTCTCAGACTTTAATCAACAAGGTAAGTTTATTCTCACGATT
AATGACAGTAAATCACACCCTTTTACCATTGGTACTCATTTACTGATGAAAAACACGTTTTCTGATGTTTTACATTATTT
TAAGTCTCAACGTTGTAGTGGTATTTTTGATAAACAAGATAAAAAAAAACCTATCATCAATAGCAAAGAAACCATTGATG
TTCATGGTGGTTGGTATGACGCATCGGGTGATGTCAGTAAGTATTTAAGCCACTTATCTTACGCTAATTATTTAAACCCT
CAGCAAATCCCAATGGTTGTATGGAATATGCTTAAAGGCTTAGAGTTAACTCAAAACCTATCGGATTTTGCTGCATTCTC
TCGCACTCGTCTTACGGAAGAGGCGTTATTTGGTGCTGACTTCTTAGTTCGTATGCAAAGTCCGGAAGGTTTCTTCTATA
TGACGGTTTTTGATAAATGGAGTAAAGATATAACTCAACGAGATATCTGTGCTTATTCAACTCAAAATGGTCATAAGTCT
GATGATTATCAAGCTGGTTTTCGTCAAGGTGGTGGTATATCCATTGCAGCTCTTGCGGCTGCTTCTCGTTTAAGTACTGA
AGGTGAATTTACTCACGACGAGTATTTAAGCGCAGCAGTTAAAGGCTATTGGCACTTAAAAGAAAACAATCTCAATTACT
TGAATAACGGTGAAGAAAATATTATTGATGAATATTGCGCTCTTCTTGCTGTTATCGAACTGTTCAAAACAACCCAAAAT
AACGCTTTCTTAATTGAAGCTCGTGTATGGGCTGAAAGATTATCTGCTCGCCAACTAAGTGATGAAAATCAAAATAATTT
CTGGTCTGCAACTAAAAATGGAGAGCGTCCTTATTACCATGCGGCTGAAGCGGGTCTTCCTGCAATTGCGCTTTCTCAAT
ACCTCGACATTGAAACGGATAATAGTCGCCGAGCAAAGACTCAACTGACAATAACTCAAGCCGTTCAATTTGAACTGACA
ATAACATCAGAAGTCAGTAACCCTTTTGGCTATCCTCGCCAATATGTAAAACCAGTAAATGATAATAAACGCAGTTCTTT
TTTTGTCGCCCACGACAATGAATCGGGCTATTGGTGGCAAGGTGAAAATGCACGTTTAGGCTCTTTGGCAAGCATGAGTT
ACTTAGCTCTCCCTTATATCACCTCTAAAAATACGGTACAAAAACTCGAATGCTTTGCTCAACAAAATTTAAATTGGGTA
TTAGGTTTAAATCCTTATGACATGTGCATGTTAGATGGTCATGGACATAACAATCCAGATTACCTTCCTCATCTTGGGTT
CTTTAATGCTAAAGGTGGTGTATGTAACGGGATTACTGGTGGATTTGAAGATGAAGACGATATTGCGTTTAATCCAGTCC
CACACGGTGATGACATGTTACAAAACTGGCGTTGGGGAGAGCAATGGATCCCTCACGGTGCATGGTACCTACTGGCGATT
TTATCTCAATATTCTTATCAATCAATGCAGGTAAATAATAATGACTGA

Upstream 100 bases:

>100_bases
AAAACTGTCAGACAACCATTTTGTTCGTTGTTACTTGTTCGAAAATTAATTTCACACAAGTTAACCTCAAACAGCAGTAA
TTGGTATTTTGGAGAAATAG

Downstream 100 bases:

>100_bases
TCTGTATGTAGGTATTGATGGTGGCGGTACATCTTGTCGTGCTCGAATTCGCAATAAACAAGGCGAATTACTTGGTGAAG
CTAGGAGTGGCAGTGCGAAT

Product: chitobiase (exoglucosidase)

Products: beta-D-Gal-(1->3)-D-GlcNAc; beta-D-Gal-(1->4)-D-Glc; lacto-N-biose; lactose

Alternate protein names: Endoglucanase-Related Protein; Endoglucanase-Like Protein; Chitobiase; Glycoside Hydrolase Family Protein; Endoglucanase; Glucosamine-Link Cellobiase; Beta-Glycosidase-Like Protein; Glycosy Hydrolase Family Protein

Number of amino acids: Translated: 575; Mature: 575

Protein sequence:

>575_residues
MQLLTNHIGYEHNGPKSAVLLTDSPLNKELLGNLICTQTQQVKHQFSISSSLQIAKWHQGYFAEIDFSDFNQQGKFILTI
NDSKSHPFTIGTHLLMKNTFSDVLHYFKSQRCSGIFDKQDKKKPIINSKETIDVHGGWYDASGDVSKYLSHLSYANYLNP
QQIPMVVWNMLKGLELTQNLSDFAAFSRTRLTEEALFGADFLVRMQSPEGFFYMTVFDKWSKDITQRDICAYSTQNGHKS
DDYQAGFRQGGGISIAALAAASRLSTEGEFTHDEYLSAAVKGYWHLKENNLNYLNNGEENIIDEYCALLAVIELFKTTQN
NAFLIEARVWAERLSARQLSDENQNNFWSATKNGERPYYHAAEAGLPAIALSQYLDIETDNSRRAKTQLTITQAVQFELT
ITSEVSNPFGYPRQYVKPVNDNKRSSFFVAHDNESGYWWQGENARLGSLASMSYLALPYITSKNTVQKLECFAQQNLNWV
LGLNPYDMCMLDGHGHNNPDYLPHLGFFNAKGGVCNGITGGFEDEDDIAFNPVPHGDDMLQNWRWGEQWIPHGAWYLLAI
LSQYSYQSMQVNNND

Sequences:

>Translated_575_residues
MQLLTNHIGYEHNGPKSAVLLTDSPLNKELLGNLICTQTQQVKHQFSISSSLQIAKWHQGYFAEIDFSDFNQQGKFILTI
NDSKSHPFTIGTHLLMKNTFSDVLHYFKSQRCSGIFDKQDKKKPIINSKETIDVHGGWYDASGDVSKYLSHLSYANYLNP
QQIPMVVWNMLKGLELTQNLSDFAAFSRTRLTEEALFGADFLVRMQSPEGFFYMTVFDKWSKDITQRDICAYSTQNGHKS
DDYQAGFRQGGGISIAALAAASRLSTEGEFTHDEYLSAAVKGYWHLKENNLNYLNNGEENIIDEYCALLAVIELFKTTQN
NAFLIEARVWAERLSARQLSDENQNNFWSATKNGERPYYHAAEAGLPAIALSQYLDIETDNSRRAKTQLTITQAVQFELT
ITSEVSNPFGYPRQYVKPVNDNKRSSFFVAHDNESGYWWQGENARLGSLASMSYLALPYITSKNTVQKLECFAQQNLNWV
LGLNPYDMCMLDGHGHNNPDYLPHLGFFNAKGGVCNGITGGFEDEDDIAFNPVPHGDDMLQNWRWGEQWIPHGAWYLLAI
LSQYSYQSMQVNNND
>Mature_575_residues
MQLLTNHIGYEHNGPKSAVLLTDSPLNKELLGNLICTQTQQVKHQFSISSSLQIAKWHQGYFAEIDFSDFNQQGKFILTI
NDSKSHPFTIGTHLLMKNTFSDVLHYFKSQRCSGIFDKQDKKKPIINSKETIDVHGGWYDASGDVSKYLSHLSYANYLNP
QQIPMVVWNMLKGLELTQNLSDFAAFSRTRLTEEALFGADFLVRMQSPEGFFYMTVFDKWSKDITQRDICAYSTQNGHKS
DDYQAGFRQGGGISIAALAAASRLSTEGEFTHDEYLSAAVKGYWHLKENNLNYLNNGEENIIDEYCALLAVIELFKTTQN
NAFLIEARVWAERLSARQLSDENQNNFWSATKNGERPYYHAAEAGLPAIALSQYLDIETDNSRRAKTQLTITQAVQFELT
ITSEVSNPFGYPRQYVKPVNDNKRSSFFVAHDNESGYWWQGENARLGSLASMSYLALPYITSKNTVQKLECFAQQNLNWV
LGLNPYDMCMLDGHGHNNPDYLPHLGFFNAKGGVCNGITGGFEDEDDIAFNPVPHGDDMLQNWRWGEQWIPHGAWYLLAI
LSQYSYQSMQVNNND

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.2.1.14

Molecular weight: Translated: 65314; Mature: 65314

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLLTNHIGYEHNGPKSAVLLTDSPLNKELLGNLICTQTQQVKHQFSISSSLQIAKWHQG
CCCHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHCCCCCCEEEEECCC
YFAEIDFSDFNQQGKFILTINDSKSHPFTIGTHLLMKNTFSDVLHYFKSQRCSGIFDKQD
EEEEEEHHCCCCCCCEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
KKKPIINSKETIDVHGGWYDASGDVSKYLSHLSYANYLNPQQIPMVVWNMLKGLELTQNL
CCCCCCCCCCEEEECCCEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHCH
SDFAAFSRTRLTEEALFGADFLVRMQSPEGFFYMTVFDKWSKDITQRDICAYSTQNGHKS
HHHHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEEECHHHHHHHHHHHHEECCCCCCCC
DDYQAGFRQGGGISIAALAAASRLSTEGEFTHDEYLSAAVKGYWHLKENNLNYLNNGEEN
CCHHHHHCCCCCEEEHHHHHHHHCCCCCCCCHHHHHHHHHHHEEEEECCCCCCCCCCHHH
IIDEYCALLAVIELFKTTQNNAFLIEARVWAERLSARQLSDENQNNFWSATKNGERPYYH
HHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE
AAEAGLPAIALSQYLDIETDNSRRAKTQLTITQAVQFELTITSEVSNPFGYPRQYVKPVN
HHHCCCCHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCHHHHCCCC
DNKRSSFFVAHDNESGYWWQGENARLGSLASMSYLALPYITSKNTVQKLECFAQQNLNWV
CCCCCEEEEEECCCCCCEECCCCCCCCCHHHHHHHEEEEECCCCHHHHHHHHHHCCCCEE
LGLNPYDMCMLDGHGHNNPDYLPHLGFFNAKGGVCNGITGGFEDEDDIAFNPVPHGDDML
EECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHH
QNWRWGEQWIPHGAWYLLAILSQYSYQSMQVNNND
HCCCCCHHHCCCHHHHHHHHHHHHCCCEEEECCCC
>Mature Secondary Structure
MQLLTNHIGYEHNGPKSAVLLTDSPLNKELLGNLICTQTQQVKHQFSISSSLQIAKWHQG
CCCHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHCCCCCCEEEEECCC
YFAEIDFSDFNQQGKFILTINDSKSHPFTIGTHLLMKNTFSDVLHYFKSQRCSGIFDKQD
EEEEEEHHCCCCCCCEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
KKKPIINSKETIDVHGGWYDASGDVSKYLSHLSYANYLNPQQIPMVVWNMLKGLELTQNL
CCCCCCCCCCEEEECCCEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHCH
SDFAAFSRTRLTEEALFGADFLVRMQSPEGFFYMTVFDKWSKDITQRDICAYSTQNGHKS
HHHHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEEECHHHHHHHHHHHHEECCCCCCCC
DDYQAGFRQGGGISIAALAAASRLSTEGEFTHDEYLSAAVKGYWHLKENNLNYLNNGEEN
CCHHHHHCCCCCEEEHHHHHHHHCCCCCCCCHHHHHHHHHHHEEEEECCCCCCCCCCHHH
IIDEYCALLAVIELFKTTQNNAFLIEARVWAERLSARQLSDENQNNFWSATKNGERPYYH
HHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE
AAEAGLPAIALSQYLDIETDNSRRAKTQLTITQAVQFELTITSEVSNPFGYPRQYVKPVN
HHHCCCCHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCHHHHCCCC
DNKRSSFFVAHDNESGYWWQGENARLGSLASMSYLALPYITSKNTVQKLECFAQQNLNWV
CCCCCEEEEEECCCCCCEECCCCCCCCCHHHHHHHEEEEECCCCHHHHHHHHHHCCCCEE
LGLNPYDMCMLDGHGHNNPDYLPHLGFFNAKGGVCNGITGGFEDEDDIAFNPVPHGDDML
EECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHH
QNWRWGEQWIPHGAWYLLAILSQYSYQSMQVNNND
HCCCCCHHHCCCHHHHHHHHHHHHCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: beta-D-Gal-(1->3)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-D-Glc; H2O; lacto-N-tetraose

Specific reaction: (1) beta-D-Gal-(1->3)-beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-D-Glc + H2O = beta-D-Gal-(1->3)-D-GlcNAc + beta-D-Gal-(1->4)-D-Glc; (2) lacto-N-tetraose + H2O = lacto-N-biose + lactose

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA