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The map label for this gene is dppB [C]

Identifier: 209695993

GI number: 209695993

Start: 2776248

End: 2777234

Strand: Direct

Name: dppB [C]

Synonym: VSAL_I2577

Alternate gene names: 209695993

Gene position: 2776248-2777234 (Clockwise)

Preceding gene: 209695992

Following gene: 209695994

Centisome position: 83.49

GC content: 40.43

Gene sequence:

>987_bases
ATGGGATTTTTTCTAAGACGTTTATCGTTCTATTTTATTGCGTTGGTCGTTGCTGCAACGATTAACTTTATTATACCGCG
AGCAATGCCAGGTGACCCAGTTACCATGATGTTCGCGAATGCGACTACTCAGGTAACTCCTGAGCGTATAGAAGCTATGA
AACAACTACTTGGTTTTGTTGATGGGCCTCTTTATCAGCAATACTTTATCTATATTAAAAATATCCTAACTTGGGAATTA
GGTACTTCAATTAAATTCTACCCTCTAAGTGTAAATACACTATTAGGTGGTGCATTTGGTTGGTCTCTTTTCTTGGCGGG
TACTGCGGTTGTTCTATCTTTCTCTCTAGGTTCTATATTAGGTATTTTTGCGGCTTGGAAACGAGGCAGCGCTTATGACA
CATTTATCTCTCCTGGGATGTTGGTTATCCAAGCGGTACCACAAGTAGTTATTGCGATGCTTGCCATGTTTACTTTTGCC
GTGGGATTAAAATGGTTCCCCACAGGTTATGCATATACACCAGGTAATATTCCCGACTGGACTAGCTGGGCATTTATTAA
AGATGTCGCTTACCACGCTATTCTTCCTTTGTTGTGTGCATCAATAGTTCAAATTGGTGGCTTCCTGATAAACATGCGTA
ACAACATGATTAATCTGCTTGGTGAAGACTACATCACCATGGCAAAAGGCAAGGGATTGAGTGAAAACAGAGTGGTATTT
AACTACGCTGCTCGTAACGCAATGCTACCAAGCGTTACTGCTTTATCAATGTCTTTAGGTATGGCTATTGGCGGTCAACT
TATTGTTGAAATCATTTTTAACTACCCGGGTCTTGGCTCTGTATTATTCAACGCCATTAATTCTCGAGATTACCAAGTAC
TTCAAGGTCAGCTATTAATCATGACTCTGTTTATGCTCTTCTTTAACCTTCTTGCAGACATGTTATACGTTGTTCTAGAC
CCTCGCTTACGCAAGGGAGGAAAATAA

Upstream 100 bases:

>100_bases
CTTCCCTATTAGCTAAAGGATTGGCGCTCGTCGTCAGGGGATTTTGCGTCCTGATTTCCAGATCAGGCAAATAATAATCT
GGATGAGTAAGGTGTGAATT

Downstream 100 bases:

>100_bases
TAATGAAAAACTTAATTAAACTTCTTACTGGTAACTCTAAGTCACTGTTTGGTTTAGGTATCTTATTCACGTTTATCTTC
GTCGCTGTATTTGCTCCATT

Product: ABC transporter permease

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 327

Protein sequence:

>328_residues
MGFFLRRLSFYFIALVVAATINFIIPRAMPGDPVTMMFANATTQVTPERIEAMKQLLGFVDGPLYQQYFIYIKNILTWEL
GTSIKFYPLSVNTLLGGAFGWSLFLAGTAVVLSFSLGSILGIFAAWKRGSAYDTFISPGMLVIQAVPQVVIAMLAMFTFA
VGLKWFPTGYAYTPGNIPDWTSWAFIKDVAYHAILPLLCASIVQIGGFLINMRNNMINLLGEDYITMAKGKGLSENRVVF
NYAARNAMLPSVTALSMSLGMAIGGQLIVEIIFNYPGLGSVLFNAINSRDYQVLQGQLLIMTLFMLFFNLLADMLYVVLD
PRLRKGGK

Sequences:

>Translated_328_residues
MGFFLRRLSFYFIALVVAATINFIIPRAMPGDPVTMMFANATTQVTPERIEAMKQLLGFVDGPLYQQYFIYIKNILTWEL
GTSIKFYPLSVNTLLGGAFGWSLFLAGTAVVLSFSLGSILGIFAAWKRGSAYDTFISPGMLVIQAVPQVVIAMLAMFTFA
VGLKWFPTGYAYTPGNIPDWTSWAFIKDVAYHAILPLLCASIVQIGGFLINMRNNMINLLGEDYITMAKGKGLSENRVVF
NYAARNAMLPSVTALSMSLGMAIGGQLIVEIIFNYPGLGSVLFNAINSRDYQVLQGQLLIMTLFMLFFNLLADMLYVVLD
PRLRKGGK
>Mature_327_residues
GFFLRRLSFYFIALVVAATINFIIPRAMPGDPVTMMFANATTQVTPERIEAMKQLLGFVDGPLYQQYFIYIKNILTWELG
TSIKFYPLSVNTLLGGAFGWSLFLAGTAVVLSFSLGSILGIFAAWKRGSAYDTFISPGMLVIQAVPQVVIAMLAMFTFAV
GLKWFPTGYAYTPGNIPDWTSWAFIKDVAYHAILPLLCASIVQIGGFLINMRNNMINLLGEDYITMAKGKGLSENRVVFN
YAARNAMLPSVTALSMSLGMAIGGQLIVEIIFNYPGLGSVLFNAINSRDYQVLQGQLLIMTLFMLFFNLLADMLYVVLDP
RLRKGGK

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=340, Percent_Identity=31.4705882352941, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1787053, Length=325, Percent_Identity=30.4615384615385, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1787497, Length=327, Percent_Identity=29.0519877675841, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1789888, Length=326, Percent_Identity=30.0613496932515, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI1788504, Length=364, Percent_Identity=27.1978021978022, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1787761, Length=347, Percent_Identity=27.0893371757925, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787550, Length=279, Percent_Identity=22.9390681003584, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36260; Mature: 36128

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFFLRRLSFYFIALVVAATINFIIPRAMPGDPVTMMFANATTQVTPERIEAMKQLLGFV
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
DGPLYQQYFIYIKNILTWELGTSIKFYPLSVNTLLGGAFGWSLFLAGTAVVLSFSLGSIL
CCHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIFAAWKRGSAYDTFISPGMLVIQAVPQVVIAMLAMFTFAVGLKWFPTGYAYTPGNIPDW
HHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCC
TSWAFIKDVAYHAILPLLCASIVQIGGFLINMRNNMINLLGEDYITMAKGKGLSENRVVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHCCCCCCCCCEEE
NYAARNAMLPSVTALSMSLGMAIGGQLIVEIIFNYPGLGSVLFNAINSRDYQVLQGQLLI
EEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHH
MTLFMLFFNLLADMLYVVLDPRLRKGGK
HHHHHHHHHHHHHHHHHHHCHHHHCCCC
>Mature Secondary Structure 
GFFLRRLSFYFIALVVAATINFIIPRAMPGDPVTMMFANATTQVTPERIEAMKQLLGFV
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
DGPLYQQYFIYIKNILTWELGTSIKFYPLSVNTLLGGAFGWSLFLAGTAVVLSFSLGSIL
CCHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIFAAWKRGSAYDTFISPGMLVIQAVPQVVIAMLAMFTFAVGLKWFPTGYAYTPGNIPDW
HHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCC
TSWAFIKDVAYHAILPLLCASIVQIGGFLINMRNNMINLLGEDYITMAKGKGLSENRVVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHCCCCCCCCCEEE
NYAARNAMLPSVTALSMSLGMAIGGQLIVEIIFNYPGLGSVLFNAINSRDYQVLQGQLLI
EEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHH
MTLFMLFFNLLADMLYVVLDPRLRKGGK
HHHHHHHHHHHHHHHHHHHCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA