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The map label for this gene is smpA [H]

Identifier: 209695896

GI number: 209695896

Start: 2652019

End: 2652375

Strand: Direct

Name: smpA [H]

Synonym: VSAL_I2476

Alternate gene names: 209695896

Gene position: 2652019-2652375 (Clockwise)

Preceding gene: 209695895

Following gene: 209695899

Centisome position: 79.76

GC content: 39.78

Gene sequence:

>357_bases
ATGCAATTCAAAAAATGGATCATTGCTCTACCCCTTGCTGCTGGACTATTGGGTGGTTGCTCGCTAGTAGAACCATTGGT
ATATCGAATCGATATTAGCCAAGGTAACTACGTCGAACAGGAAGCCGTCGATAAACTGCGATTTGGCATGACAAAACAAC
AAGTACAGTTTGTTATGGGTTCCCCAATGCTTGTTGAATCAGGCTACCCAAACACTTGGTATTACATTTATCTATTTACT
CATGGACACGAGAAATCAGTTCAAAAGGACATGATTGCTCAGTTTGATGATAATGGTAATCTAACCAGTATTGAGGGATA
TTTCCCTATGAGCGATAGCTTCTTCGAAAAAATGTAA

Upstream 100 bases:

>100_bases
TAGGGTCAAAATACACCAGAACAGGCTTAACCTTTTTACTTATCAAGTCAGCTTGTTTATCATCTATTTAATTATTTAAA
AGGCTAAAGCTGTACGAACT

Downstream 100 bases:

>100_bases
TTTTCCTTACAAAAGAAAAACTACGTTTAAACACAAAAAACCGGAAATCGTTAAACGACTTCCGGTTTTTTATTTTCCGA
TACTGCTCTATTTTTTAGCG

Product: lipoprotein, small protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MQFKKWIIALPLAAGLLGGCSLVEPLVYRIDISQGNYVEQEAVDKLRFGMTKQQVQFVMGSPMLVESGYPNTWYYIYLFT
HGHEKSVQKDMIAQFDDNGNLTSIEGYFPMSDSFFEKM

Sequences:

>Translated_118_residues
MQFKKWIIALPLAAGLLGGCSLVEPLVYRIDISQGNYVEQEAVDKLRFGMTKQQVQFVMGSPMLVESGYPNTWYYIYLFT
HGHEKSVQKDMIAQFDDNGNLTSIEGYFPMSDSFFEKM
>Mature_118_residues
MQFKKWIIALPLAAGLLGGCSLVEPLVYRIDISQGNYVEQEAVDKLRFGMTKQQVQFVMGSPMLVESGYPNTWYYIYLFT
HGHEKSVQKDMIAQFDDNGNLTSIEGYFPMSDSFFEKM

Specific function: Unknown

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

Organism=Escherichia coli, GI87082138, Length=111, Percent_Identity=37.8378378378378, Blast_Score=89, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 13521; Mature: 13521

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFKKWIIALPLAAGLLGGCSLVEPLVYRIDISQGNYVEQEAVDKLRFGMTKQQVQFVMG
CCHHHHHHHHHHHHHHHCCHHHHCCEEEEEECCCCCEECHHHHHHHHHCCCHHHHHHHCC
SPMLVESGYPNTWYYIYLFTHGHEKSVQKDMIAQFDDNGNLTSIEGYFPMSDSFFEKM
CCEEEECCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHCC
>Mature Secondary Structure
MQFKKWIIALPLAAGLLGGCSLVEPLVYRIDISQGNYVEQEAVDKLRFGMTKQQVQFVMG
CCHHHHHHHHHHHHHHHCCHHHHCCEEEEEECCCCCEECHHHHHHHHHCCCHHHHHHHCC
SPMLVESGYPNTWYYIYLFTHGHEKSVQKDMIAQFDDNGNLTSIEGYFPMSDSFFEKM
CCEEEECCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA