Click here to switch to the map view.

The map label for this gene is nlpB [H]

Identifier: 209695803

GI number: 209695803

Start: 2548424

End: 2549476

Strand: Reverse

Name: nlpB [H]

Synonym: VSAL_I2378

Alternate gene names: 209695803

Gene position: 2549476-2548424 (Counterclockwise)

Preceding gene: 209695804

Following gene: 209695798

Centisome position: 76.67

GC content: 39.98

Gene sequence:

>1053_bases
ATGAAAGTGAACACTCGCTTTGTTGTTGGATCATTGATGGTTGCTATGTTAGCGGCTTGTTCAAGCAGTCCAACTGAGCG
TCGCCAAGCTAAACAAGATTTTAAATATTTAGATACGGCACCATTAAAAGAATGGCAACAGCCAGCGGAAGCTAAACCTG
AGTTCTATCCTCAATATGATATTCCTAAAGGGGAGTATGTTGGTGGCGTCGGAAAAGGTGTCGATATTCGACCTCCTCAG
CAAGTATTAGAACTGATCCCAGGGGCTCGTATAGAAGAGCAACAAGGGGAAGTCTCTGTATGGCTTGTGAAAGATGAAGA
TCTTGATAAGCTTTGGCAAACGGTGTTGGGCTTAATTAAAAAACGAAATATCACATTACTAAAACAATCGGATACTGAAC
TTGAAACTGATTGGTTAACGTGGAATTCAGAAGATGAAGATCATGAGTTTGGTTCTCGTTATTTGATTACTAAGTTAAAT
CAAAATAATCGCTCAGGATTTAAAATTGTTCTGATTGATTGGCAAGTTGATGGTAAACAAGCTGAAGTTACTCAAGCAAA
TAAAGCGCGTTATAATATTTTAATGACGAATTTAGTGACGTCTGCTTATGACGAGCAGCTTCGCGAAGAAGCGCGTATTC
GTGCTGAAGAGCTTGTTAAGCGTATCCCTATTTCTATGGGACAAGATCGCAGTGGTCTTCCTGTGATAATCGCTCGTGCG
CCTTATAATGTTTTCTGGGAGCGTCTTGGTGATTTATTGCCTATGATGGGACTGAATATTGAAGATAGAAACCGTTCGCA
AGGAACCATTGAGGTTAAATATAAAGAGCCTGATGATGAGTTCTGGCAAGAGATTGGTACAAAACCATTGTCTTTTGAAG
GTCGCACTTACAACCTACTATTAGGTGATCTTGGTAACCGTACTTCTATTAATGTAACGGATGCTGCGGGTAAACCGGTA
GATGAAGCGACTCTTGATTCATTAGTTCCTGTGTTGGCTGCAATGATTGAAAAATCAAATAAGAAGCCAAAAACAGAAAT
AACGGAAGAATAG

Upstream 100 bases:

>100_bases
CTGATATTCGTTTACCACTAACAGAATTAAGTCATTCAGCACAACCAGTTGTTGAACAAGCATTAATTCGTGCTGGTGTG
TTGAAGTAGTAGGATAAAAA

Downstream 100 bases:

>100_bases
ACACGTTTGTTATATAAGAAAGACGCTCAAATTATTGGGCGTCGTTTTTTTCGTCTTCAGATTGATTCATTGCTACCGAT
TCATTTTTTCAGAACCTAAT

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MKVNTRFVVGSLMVAMLAACSSSPTERRQAKQDFKYLDTAPLKEWQQPAEAKPEFYPQYDIPKGEYVGGVGKGVDIRPPQ
QVLELIPGARIEEQQGEVSVWLVKDEDLDKLWQTVLGLIKKRNITLLKQSDTELETDWLTWNSEDEDHEFGSRYLITKLN
QNNRSGFKIVLIDWQVDGKQAEVTQANKARYNILMTNLVTSAYDEQLREEARIRAEELVKRIPISMGQDRSGLPVIIARA
PYNVFWERLGDLLPMMGLNIEDRNRSQGTIEVKYKEPDDEFWQEIGTKPLSFEGRTYNLLLGDLGNRTSINVTDAAGKPV
DEATLDSLVPVLAAMIEKSNKKPKTEITEE

Sequences:

>Translated_350_residues
MKVNTRFVVGSLMVAMLAACSSSPTERRQAKQDFKYLDTAPLKEWQQPAEAKPEFYPQYDIPKGEYVGGVGKGVDIRPPQ
QVLELIPGARIEEQQGEVSVWLVKDEDLDKLWQTVLGLIKKRNITLLKQSDTELETDWLTWNSEDEDHEFGSRYLITKLN
QNNRSGFKIVLIDWQVDGKQAEVTQANKARYNILMTNLVTSAYDEQLREEARIRAEELVKRIPISMGQDRSGLPVIIARA
PYNVFWERLGDLLPMMGLNIEDRNRSQGTIEVKYKEPDDEFWQEIGTKPLSFEGRTYNLLLGDLGNRTSINVTDAAGKPV
DEATLDSLVPVLAAMIEKSNKKPKTEITEE
>Mature_350_residues
MKVNTRFVVGSLMVAMLAACSSSPTERRQAKQDFKYLDTAPLKEWQQPAEAKPEFYPQYDIPKGEYVGGVGKGVDIRPPQ
QVLELIPGARIEEQQGEVSVWLVKDEDLDKLWQTVLGLIKKRNITLLKQSDTELETDWLTWNSEDEDHEFGSRYLITKLN
QNNRSGFKIVLIDWQVDGKQAEVTQANKARYNILMTNLVTSAYDEQLREEARIRAEELVKRIPISMGQDRSGLPVIIARA
PYNVFWERLGDLLPMMGLNIEDRNRSQGTIEVKYKEPDDEFWQEIGTKPLSFEGRTYNLLLGDLGNRTSINVTDAAGKPV
DEATLDSLVPVLAAMIEKSNKKPKTEITEE

Specific function: Non-essential lipoprotein [H]

COG id: COG3317

COG function: function code M; Uncharacterized lipoprotein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082112, Length=334, Percent_Identity=33.8323353293413, Blast_Score=196, Evalue=2e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010653
- InterPro:   IPR014524 [H]

Pfam domain/function: PF06804 Lipoprotein_18 [H]

EC number: NA

Molecular weight: Translated: 39818; Mature: 39818

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVNTRFVVGSLMVAMLAACSSSPTERRQAKQDFKYLDTAPLKEWQQPAEAKPEFYPQYD
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCC
IPKGEYVGGVGKGVDIRPPQQVLELIPGARIEEQQGEVSVWLVKDEDLDKLWQTVLGLIK
CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEECCCCCEEEEEECCCCHHHHHHHHHHHHH
KRNITLLKQSDTELETDWLTWNSEDEDHEFGSRYLITKLNQNNRSGFKIVLIDWQVDGKQ
CCCEEEEECCCCCCCEEEEECCCCCCCHHCCCEEEEEEECCCCCCCEEEEEEEEEECCCC
AEVTQANKARYNILMTNLVTSAYDEQLREEARIRAEELVKRIPISMGQDRSGLPVIIARA
CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECC
PYNVFWERLGDLLPMMGLNIEDRNRSQGTIEVKYKEPDDEFWQEIGTKPLSFEGRTYNLL
CHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCEEEEE
LGDLGNRTSINVTDAAGKPVDEATLDSLVPVLAAMIEKSNKKPKTEITEE
EECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKVNTRFVVGSLMVAMLAACSSSPTERRQAKQDFKYLDTAPLKEWQQPAEAKPEFYPQYD
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCC
IPKGEYVGGVGKGVDIRPPQQVLELIPGARIEEQQGEVSVWLVKDEDLDKLWQTVLGLIK
CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEECCCCCEEEEEECCCCHHHHHHHHHHHHH
KRNITLLKQSDTELETDWLTWNSEDEDHEFGSRYLITKLNQNNRSGFKIVLIDWQVDGKQ
CCCEEEEECCCCCCCEEEEECCCCCCCHHCCCEEEEEEECCCCCCCEEEEEEEEEECCCC
AEVTQANKARYNILMTNLVTSAYDEQLREEARIRAEELVKRIPISMGQDRSGLPVIIARA
CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECC
PYNVFWERLGDLLPMMGLNIEDRNRSQGTIEVKYKEPDDEFWQEIGTKPLSFEGRTYNLL
CHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCEEEEE
LGDLGNRTSINVTDAAGKPVDEATLDSLVPVLAAMIEKSNKKPKTEITEE
EECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1885529; 2120198; 9205837; 9278503 [H]