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The map label for this gene is fliN [H]

Identifier: 209695732

GI number: 209695732

Start: 2472985

End: 2473368

Strand: Reverse

Name: fliN [H]

Synonym: VSAL_I2300

Alternate gene names: 209695732

Gene position: 2473368-2472985 (Counterclockwise)

Preceding gene: 209695733

Following gene: 209695731

Centisome position: 74.38

GC content: 42.71

Gene sequence:

>384_bases
ATGGATTCAAATGAGCAACAAATGGCTGACGAATGGGCAGCAGCATTAAGTGAAAGTGCAGAAGCAGTAAGTGCACCTCT
GGAAGATTTAGAAGAAACAACCCCTGCGTTTAACGAAGATGAACGCCGTAAGCTTGATACGATTCTAGATATTCCTGTGA
CTATTTCTATGGAGGTAGGGCGCTCACATATTAGTATTCGTAACTTACTGCAACTTAACCAAGGTTCTGTGGTTGAGCTT
GATCGTATCGCTGGTGAATCACTGGACGTTATGGTTAACGGCACGCTTATCGCTCATGGCGAAGTCGTTGTCGTGAATGA
CAAGTTTGGTATTCGTTTAACTGACGTTATCAGCCAAACTGAACGTATTAAGAAATTGCGTTAA

Upstream 100 bases:

>100_bases
ATCAAGCGCCCAGACATGGTCAAAACGGATCTTGCCTTCTTAGGTAAAAACGTTTTATTTGATTTAGATGACGAATAAGA
AATAGAGAAGGTAGTGGATC

Downstream 100 bases:

>100_bases
TCGAACAACATTGAACAAAAAGGAAAGGAATATGAAACAGCTATGGTTATTGGCATTTTTGCCCTTTCCTTTGTTCGCAG
CAACGAGTGCACCAAATATC

Product: flagellar motor switch protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MDSNEQQMADEWAAALSESAEAVSAPLEDLEETTPAFNEDERRKLDTILDIPVTISMEVGRSHISIRNLLQLNQGSVVEL
DRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLR

Sequences:

>Translated_127_residues
MDSNEQQMADEWAAALSESAEAVSAPLEDLEETTPAFNEDERRKLDTILDIPVTISMEVGRSHISIRNLLQLNQGSVVEL
DRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLR
>Mature_127_residues
MDSNEQQMADEWAAALSESAEAVSAPLEDLEETTPAFNEDERRKLDTILDIPVTISMEVGRSHISIRNLLQLNQGSVVEL
DRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLR

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=127, Percent_Identity=46.4566929133858, Blast_Score=114, Evalue=1e-27,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 14059; Mature: 14059

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSNEQQMADEWAAALSESAEAVSAPLEDLEETTPAFNEDERRKLDTILDIPVTISMEVG
CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCC
RSHISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQT
CCHHHHHHHHHCCCCCEEEHHHHCCCCEEEEECCEEEECCEEEEEECCCCEEHHHHHHHH
ERIKKLR
HHHHCCC
>Mature Secondary Structure
MDSNEQQMADEWAAALSESAEAVSAPLEDLEETTPAFNEDERRKLDTILDIPVTISMEVG
CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCC
RSHISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQT
CCHHHHHHHHHCCCCCEEEHHHHCCCCEEEEECCEEEECCEEEEEECCCCEEHHHHHHHH
ERIKKLR
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7622217; 10984043 [H]