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The map label for this gene is ccmF [H]

Identifier: 209695708

GI number: 209695708

Start: 2450835

End: 2452793

Strand: Reverse

Name: ccmF [H]

Synonym: VSAL_I2276

Alternate gene names: 209695708

Gene position: 2452793-2450835 (Counterclockwise)

Preceding gene: 209695709

Following gene: 209695707

Centisome position: 73.76

GC content: 42.47

Gene sequence:

>1959_bases
ATGATTCCAGAACTCGGTCATTTTGCGATGATTGCCTCATTAGGACTTGCTGTCCTATTGAGTATATTGCCTATGTACGG
TGCAAGCCGTGGCAATAAAGCATTAATGCAAAGTGCAAGACCTCTCGCTTGGGGGATGTTCCTACTCCTCAGTTTATCAT
TTGGGATCTTAATGTGGGCATTCTACGTTAACGATTTCACTCTCCAATACGTCGCAAGTAACTCAAACAGTTTACTGCCT
TGGTATTATCGTTTAACGGCGGTGTGGGGGGCTCATGAAGGTTCATTGCTTCTTTGGGTATTAATTCAAGCAGGTTGGAC
TGTGGCTGTAGCGACATTTAGTCGTGGTATGCCTCAAGAGTCTGTTGCTCGAGTATTGGCAGTGATGGGCTGGATTACCC
TTGGTTTCTTACTGTTTATCATTTTAACATCGAACCCATTTTTACGTACTCTGCCATTTTTTCCAATTGATGGACGTGAT
TTAAACCCATTACTTCAAGATCCTGGGTTGATCATTCATCCACCAATGCTTTATATGGGCTACGTTGGTTTCTCTGTTGC
GTTCTCATTTGCTATTGCGTCATTAATGACGGGTCGATTAGATACTGCATGGGCTCGTTGGTCTCGTCCTTGGACGATTG
CTGCATGGTCATTTCTAACCGTAGGTATCTCTCTAGGTTCGTGGTGGGCATATTATGAACTTGGCTGGGGTGGTTGGTGG
TTCTGGGATCCAGTAGAAAACGCATCATTCATGCCTTGGCTTGTTGGTACCGCATTAATGCACTCATTAGCGGTAACCGA
GAAACGTGGTACGTTTAAAGCTTGGACCGTTCTACTTGCAATATCAGCATTCTCATTAAGTTTATTAGGTACGTTCCTTG
TTCGTTCTGGCATCTTGGTATCGGTTCATGCCTTTGCTTCTGATCCCGCTCGAGGCATGTTCATCCTTGCCTTCTTAGTG
ATGGTTATCGGTGGTTCATTACTGCTGTTTGCTTTAAAAGGTTCTTCAGTTCGTGTTCGTGGTAATTTTGCTCTCTTTTC
TCGTGAAAATGCATTATTAGCCAATAATATTTTATTAATAACGGCTTTAGTTGTTGTTCTTGTTGGTACGTTATTACCCT
TAGTACATAAGCAACTTGGTTTAGGCTCAGTCTCAATCGGTGCACCGTTCTTCGATATGCTATTTGCATGGTTGATGATC
CCATTTGCATTTTTATTGGGTATTGGTCCTCTGATCCGTTGGAAGAAAGATAATTTAAATAGTCTTGTTAAACGTATGGT
AATCACAGGAGCGGTAACCGTTCCTCTTGCTGCTGTAATGATGGTTATCTTTGCAGATAAGTTCCTATTTATGGCTTACC
TAGGTTGGATGATGTCAATTTGGATCATTATTCTTCATGGTTTTGAAATGTATGAACGTGCAACTCACCGTCATACACTT
GCTGTTGGTTTAACGAAACTTGGCCGCAGTCATTGGGCGATGGTATCTGCACATATCGGTCTTGCTATTACGATTATCGG
TATTGCAATGGTACAAAACTACAGTATTGAAAAAGACGTACGTTTGGCACCTGGTGAGCACATTGAAATGAATGGCTACC
AATTCTACTTTGCTGGCATTCGTGATACTGATGGTCCTAACTATGATGGTTATACCGCTGATTTTGATATTTCGTTAGAT
GGTAAAGCCATCAATACATTACATGCTGAAAAACGTTTCTACGCAACGTCTGGAGCGATGATGACGGAAGCGGCGATTGA
CCGTGGCATTACTCGTGATCTATACATTGCGATGGGTGAGCGTTTAGATGACAACCGTTCATGGGCTGTACGTATTTATT
ACAAACCGTTCGTTCGTTGGATCTGGGCTGGTACTCTATTCATGGCATTAGGCGGTGTGTTAGCAATGTCTGATAAGCGT
TACCGTTTCCGTAAAACATCGAAAAAACAGGAGGCATAA

Upstream 100 bases:

>100_bases
AACATGATGAAGAGTACATGCCGCCAGAGGTTGCAGAAGCGATGAAAAAAACGCACTAACCTCTTAAATACACAGAAGAA
CAAAAACAAGGAACTGGTCA

Downstream 100 bases:

>100_bases
TAATGAAAAAGTTTTTATTTGTGCCACTCGCTTTGTTTTTACTTTTAGTTGCCGTGTTTGCTACCCAATTAACGCGTAAC
TCAAATGGCGATGATCCAAC

Product: cytochrome C biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 652; Mature: 652

Protein sequence:

>652_residues
MIPELGHFAMIASLGLAVLLSILPMYGASRGNKALMQSARPLAWGMFLLLSLSFGILMWAFYVNDFTLQYVASNSNSLLP
WYYRLTAVWGAHEGSLLLWVLIQAGWTVAVATFSRGMPQESVARVLAVMGWITLGFLLFIILTSNPFLRTLPFFPIDGRD
LNPLLQDPGLIIHPPMLYMGYVGFSVAFSFAIASLMTGRLDTAWARWSRPWTIAAWSFLTVGISLGSWWAYYELGWGGWW
FWDPVENASFMPWLVGTALMHSLAVTEKRGTFKAWTVLLAISAFSLSLLGTFLVRSGILVSVHAFASDPARGMFILAFLV
MVIGGSLLLFALKGSSVRVRGNFALFSRENALLANNILLITALVVVLVGTLLPLVHKQLGLGSVSIGAPFFDMLFAWLMI
PFAFLLGIGPLIRWKKDNLNSLVKRMVITGAVTVPLAAVMMVIFADKFLFMAYLGWMMSIWIIILHGFEMYERATHRHTL
AVGLTKLGRSHWAMVSAHIGLAITIIGIAMVQNYSIEKDVRLAPGEHIEMNGYQFYFAGIRDTDGPNYDGYTADFDISLD
GKAINTLHAEKRFYATSGAMMTEAAIDRGITRDLYIAMGERLDDNRSWAVRIYYKPFVRWIWAGTLFMALGGVLAMSDKR
YRFRKTSKKQEA

Sequences:

>Translated_652_residues
MIPELGHFAMIASLGLAVLLSILPMYGASRGNKALMQSARPLAWGMFLLLSLSFGILMWAFYVNDFTLQYVASNSNSLLP
WYYRLTAVWGAHEGSLLLWVLIQAGWTVAVATFSRGMPQESVARVLAVMGWITLGFLLFIILTSNPFLRTLPFFPIDGRD
LNPLLQDPGLIIHPPMLYMGYVGFSVAFSFAIASLMTGRLDTAWARWSRPWTIAAWSFLTVGISLGSWWAYYELGWGGWW
FWDPVENASFMPWLVGTALMHSLAVTEKRGTFKAWTVLLAISAFSLSLLGTFLVRSGILVSVHAFASDPARGMFILAFLV
MVIGGSLLLFALKGSSVRVRGNFALFSRENALLANNILLITALVVVLVGTLLPLVHKQLGLGSVSIGAPFFDMLFAWLMI
PFAFLLGIGPLIRWKKDNLNSLVKRMVITGAVTVPLAAVMMVIFADKFLFMAYLGWMMSIWIIILHGFEMYERATHRHTL
AVGLTKLGRSHWAMVSAHIGLAITIIGIAMVQNYSIEKDVRLAPGEHIEMNGYQFYFAGIRDTDGPNYDGYTADFDISLD
GKAINTLHAEKRFYATSGAMMTEAAIDRGITRDLYIAMGERLDDNRSWAVRIYYKPFVRWIWAGTLFMALGGVLAMSDKR
YRFRKTSKKQEA
>Mature_652_residues
MIPELGHFAMIASLGLAVLLSILPMYGASRGNKALMQSARPLAWGMFLLLSLSFGILMWAFYVNDFTLQYVASNSNSLLP
WYYRLTAVWGAHEGSLLLWVLIQAGWTVAVATFSRGMPQESVARVLAVMGWITLGFLLFIILTSNPFLRTLPFFPIDGRD
LNPLLQDPGLIIHPPMLYMGYVGFSVAFSFAIASLMTGRLDTAWARWSRPWTIAAWSFLTVGISLGSWWAYYELGWGGWW
FWDPVENASFMPWLVGTALMHSLAVTEKRGTFKAWTVLLAISAFSLSLLGTFLVRSGILVSVHAFASDPARGMFILAFLV
MVIGGSLLLFALKGSSVRVRGNFALFSRENALLANNILLITALVVVLVGTLLPLVHKQLGLGSVSIGAPFFDMLFAWLMI
PFAFLLGIGPLIRWKKDNLNSLVKRMVITGAVTVPLAAVMMVIFADKFLFMAYLGWMMSIWIIILHGFEMYERATHRHTL
AVGLTKLGRSHWAMVSAHIGLAITIIGIAMVQNYSIEKDVRLAPGEHIEMNGYQFYFAGIRDTDGPNYDGYTADFDISLD
GKAINTLHAEKRFYATSGAMMTEAAIDRGITRDLYIAMGERLDDNRSWAVRIYYKPFVRWIWAGTLFMALGGVLAMSDKR
YRFRKTSKKQEA

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=649, Percent_Identity=62.4036979969183, Blast_Score=796, Evalue=0.0,
Organism=Escherichia coli, GI1790511, Length=352, Percent_Identity=49.7159090909091, Blast_Score=293, Evalue=2e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 72754; Mature: 72754

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPELGHFAMIASLGLAVLLSILPMYGASRGNKALMQSARPLAWGMFLLLSLSFGILMWA
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHH
FYVNDFTLQYVASNSNSLLPWYYRLTAVWGAHEGSLLLWVLIQAGWTVAVATFSRGMPQE
HHHHCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEEEHHHCCCCEEEEHHHCCCCHH
SVARVLAVMGWITLGFLLFIILTSNPFLRTLPFFPIDGRDLNPLLQDPGLIIHPPMLYMG
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHHHCCCEEEECHHHHHH
YVGFSVAFSFAIASLMTGRLDTAWARWSRPWTIAAWSFLTVGISLGSWWAYYELGWGGWW
HHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEHHHHHHHHHHHCCEEEEEEECCCCEE
FWDPVENASFMPWLVGTALMHSLAVTEKRGTFKAWTVLLAISAFSLSLLGTFLVRSGILV
EECCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
SVHAFASDPARGMFILAFLVMVIGGSLLLFALKGSSVRVRGNFALFSRENALLANNILLI
EEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEEEEEEEEEECCCCHHHHHHHHH
TALVVVLVGTLLPLVHKQLGLGSVSIGAPFFDMLFAWLMIPFAFLLGIGPLIRWKKDNLN
HHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCHHEEECCCCHH
SLVKRMVITGAVTVPLAAVMMVIFADKFLFMAYLGWMMSIWIIILHGFEMYERATHRHTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVGLTKLGRSHWAMVSAHIGLAITIIGIAMVQNYSIEKDVRLAPGEHIEMNGYQFYFAGI
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCEEEECCEEEEEEEC
RDTDGPNYDGYTADFDISLDGKAINTLHAEKRFYATSGAMMTEAAIDRGITRDLYIAMGE
CCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHEECCCCHHHHHHHHCCCCHHHHHHHCC
RLDDNRSWAVRIYYKPFVRWIWAGTLFMALGGVLAMSDKRYRFRKTSKKQEA
CCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCHHEECCCCHHHHHCCCCCCC
>Mature Secondary Structure
MIPELGHFAMIASLGLAVLLSILPMYGASRGNKALMQSARPLAWGMFLLLSLSFGILMWA
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHH
FYVNDFTLQYVASNSNSLLPWYYRLTAVWGAHEGSLLLWVLIQAGWTVAVATFSRGMPQE
HHHHCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEEEHHHCCCCEEEEHHHCCCCHH
SVARVLAVMGWITLGFLLFIILTSNPFLRTLPFFPIDGRDLNPLLQDPGLIIHPPMLYMG
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHHHCCCEEEECHHHHHH
YVGFSVAFSFAIASLMTGRLDTAWARWSRPWTIAAWSFLTVGISLGSWWAYYELGWGGWW
HHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEHHHHHHHHHHHCCEEEEEEECCCCEE
FWDPVENASFMPWLVGTALMHSLAVTEKRGTFKAWTVLLAISAFSLSLLGTFLVRSGILV
EECCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
SVHAFASDPARGMFILAFLVMVIGGSLLLFALKGSSVRVRGNFALFSRENALLANNILLI
EEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEEEEEEEEEECCCCHHHHHHHHH
TALVVVLVGTLLPLVHKQLGLGSVSIGAPFFDMLFAWLMIPFAFLLGIGPLIRWKKDNLN
HHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCHHEEECCCCHH
SLVKRMVITGAVTVPLAAVMMVIFADKFLFMAYLGWMMSIWIIILHGFEMYERATHRHTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVGLTKLGRSHWAMVSAHIGLAITIIGIAMVQNYSIEKDVRLAPGEHIEMNGYQFYFAGI
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCEEEECCEEEEEEEC
RDTDGPNYDGYTADFDISLDGKAINTLHAEKRFYATSGAMMTEAAIDRGITRDLYIAMGE
CCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHEECCCCHHHHHHHHCCCCHHHHHHHCC
RLDDNRSWAVRIYYKPFVRWIWAGTLFMALGGVLAMSDKRYRFRKTSKKQEA
CCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCHHEECCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]