| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is feoB [H]
Identifier: 209695693
GI number: 209695693
Start: 2431081
End: 2433357
Strand: Direct
Name: feoB [H]
Synonym: VSAL_I2258
Alternate gene names: 209695693
Gene position: 2431081-2433357 (Clockwise)
Preceding gene: 209695692
Following gene: 209695694
Centisome position: 73.11
GC content: 39.31
Gene sequence:
>2277_bases ATGCAGTATCAGGTATTAACTGTAGGAAATCCAAACAGCGGTAAAACAACCTTATTTAATGGATTAACAGGTGCAAAGCA ACAAGTTGGTAATTGGGCTGGTGTTACGGTCGAGAAGAAAACAGGTAAATATATCTGTTCTGGCGATGAATTTTTATTAA CGGATTTACCGGGTATCTACGCGCTGGATAGTGGTAATGATGTAAACAGTCTTGATGAAACCATTGCCTCACGCGCCGTG CTTACTCATGATGCCGACGTTATTATTAATGTGGTTGATGCGTCGTGCTTAGAGCGCAGTTTATACATGACATTGCAGTT ACGTGAATTGGGTCGACCAATGATTGTTGTGCTAAATAAGATGGATGTATTAAAGCGTCAACGACAAGTATTAGATATCA AGGGATTAGAAAAAACGTTAGGTTGCCCAGTTTTAGCTCTTTCTGCGAATAATAATGGTCAAGTACATATGTTTAAAGAA AAACTGCATAAATCCATTGCCCAAGGCATTAAAATGGCACCGCTTGAATTATCGTATGGTGATAGAGTTGAAGCGGCAAT AAAAGAAGCGTCTCATTTATTCTCAAGTAAATACGCATCAAGTCGTTCTTTAGCGATCAGAGCATTAGAGAATGATGCAT TAGTGTTAAATACATTAGAAGCTGATAAACGAAATGCGATTGCTAACATTGCGAATGTCTTAACGACCGAAGTTGAAGCG GATTTCCATATTGCAGATTGTCGATATACTTTTTTACATCAACTATGCCAAAAGTTACGTCGTCAAGAAGGTGGACTAAG CCACAGCGTAAGCGAAAAAATTGATAGTGTAATTTTGAATAAATGGGTTGGTATTCCTTTCTTTTTCTTCGTTATGTACT TAATGTTCATGTTTTCTATCAATATAGGCAGCGCATTTATCGATTTCTTTGATATCGGTGTGGGTGCATTATTGGTAGAT GGAAGTCATTATTTATTAGATAACCATTTACCGGTTTGGCTAGTGACATTGATTGCTGATGGTGTTGGTGGTGGTATTCA AACTGTTGCAACATTTATTCCTGTTATCGGTTGTTTATACCTATTTTTATCTTTGCTTGAAAGCTCAGGCTACATGGCTC GTGCTGCTTTTGTTCTTGATAAAGTAATGCAAAAAATTGGTTTACCTGGTAAAGCGTTTGTTCCTTTAGTGCTTGGTTTT GGTTGTAACGTTCCTGCCATTATGGCAACTCGAACGTTAGAGCAGGAGCGTGAACGTAAACTAGCGGCTTCAATGGCGCC ATTTATGTCATGTGGTGCACGCTTGCCTGTTTATGCGTTGTTTGCTGCGGCATTCTTTCCAGAAAATGGACAAAATGTTG TGTTTGGTTTGTACTTTTTAGGTATTTTAGCCGCTGTATTTACCGGCTTACTGCTAAAACATACTATCTATCCTGGTCGT AGTGATACGTTCATTATGGAAATTCCTGATTATGAATTTCCAACGGTACGTAACATCATGATTAAAACATGGCAGAAATT GAAGCGCTTTGTTCTTGGTGCCGGTAAAACTATTGTTGTGGTAGTGACTATTTTGAGTTTCTTTAATTCTTTAGGAATGG ATGGTTCTTTTGGTAATGAAGACAGTGAAAATTCAGTATTATCAAAAGCGGCTCAAATTGTGACACCGATATTAGCACCA ATTGGTATTCAAGAAGACAACTGGCCTGCAACCGTCGGTATTATCACGGGTATTTTTGCTAAAGAAGCGGTAGTGGGTAC ATTAAACAGCTTATATGCTGATCCTGCGGGAGATGACGCTGAATTTAATCTTATGGCTAGCCTTGAAGAAGCCGTAATGT CGATCCCTGAGAACTTAACGGGTCTTAGTTATTCTGATCCATTAGGGGTTGAAGTGGGGGATTTAACGGACAGTGCGGCT GTCGCGGCAGACCAAGGTGTAGAACGCTCTATCTTTGGTAACTTACAAACGTATTTTGTAACGAGTGCAAGTGCAATGGC GTATTTAATCTTTATCTTGCTGTATACACCATGTGTTGCTGCAATGGGGGCTTACATGCGTGAATTTGGTCGTCAATATT CTTATTTTATTGCTGGTTGGACGATGTTATTGGCTTATGTGTCTTCGACATTATTTTACCAAATTGCAAACTTCTCTAAT GCTCCGATGACAAGCAGTATGTGGATTGCGATTTCACTAGCTGCAATGGCTGTAACTTATTTAGCGTTGAAGAGAAAGAG TCGAGAGGTTGAAAACCAAGAGGCGGCATTAGTATGA
Upstream 100 bases:
>100_bases AAGGCTCCAATGGGTGACCCGTTACAGATCAGTGTAAGAGGTACTTCTCTTGCCATTCGTAAAAATCTAGCAGAACAGAT TACAGTTAAGGAATTATAAA
Downstream 100 bases:
>100_bases TACTCACTGAGCTTAAGCAATATATTGATGAAGAGGGTCGGGTTGAAAGACTGACTCTCGCGAAAAAGTTCAGTATGAGT GAAGATGGTGTTGATGCAAT
Product: ferrous iron transport protein FeoB
Products: Fe (II) [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 758; Mature: 758
Protein sequence:
>758_residues MQYQVLTVGNPNSGKTTLFNGLTGAKQQVGNWAGVTVEKKTGKYICSGDEFLLTDLPGIYALDSGNDVNSLDETIASRAV LTHDADVIINVVDASCLERSLYMTLQLRELGRPMIVVLNKMDVLKRQRQVLDIKGLEKTLGCPVLALSANNNGQVHMFKE KLHKSIAQGIKMAPLELSYGDRVEAAIKEASHLFSSKYASSRSLAIRALENDALVLNTLEADKRNAIANIANVLTTEVEA DFHIADCRYTFLHQLCQKLRRQEGGLSHSVSEKIDSVILNKWVGIPFFFFVMYLMFMFSINIGSAFIDFFDIGVGALLVD GSHYLLDNHLPVWLVTLIADGVGGGIQTVATFIPVIGCLYLFLSLLESSGYMARAAFVLDKVMQKIGLPGKAFVPLVLGF GCNVPAIMATRTLEQERERKLAASMAPFMSCGARLPVYALFAAAFFPENGQNVVFGLYFLGILAAVFTGLLLKHTIYPGR SDTFIMEIPDYEFPTVRNIMIKTWQKLKRFVLGAGKTIVVVVTILSFFNSLGMDGSFGNEDSENSVLSKAAQIVTPILAP IGIQEDNWPATVGIITGIFAKEAVVGTLNSLYADPAGDDAEFNLMASLEEAVMSIPENLTGLSYSDPLGVEVGDLTDSAA VAADQGVERSIFGNLQTYFVTSASAMAYLIFILLYTPCVAAMGAYMREFGRQYSYFIAGWTMLLAYVSSTLFYQIANFSN APMTSSMWIAISLAAMAVTYLALKRKSREVENQEAALV
Sequences:
>Translated_758_residues MQYQVLTVGNPNSGKTTLFNGLTGAKQQVGNWAGVTVEKKTGKYICSGDEFLLTDLPGIYALDSGNDVNSLDETIASRAV LTHDADVIINVVDASCLERSLYMTLQLRELGRPMIVVLNKMDVLKRQRQVLDIKGLEKTLGCPVLALSANNNGQVHMFKE KLHKSIAQGIKMAPLELSYGDRVEAAIKEASHLFSSKYASSRSLAIRALENDALVLNTLEADKRNAIANIANVLTTEVEA DFHIADCRYTFLHQLCQKLRRQEGGLSHSVSEKIDSVILNKWVGIPFFFFVMYLMFMFSINIGSAFIDFFDIGVGALLVD GSHYLLDNHLPVWLVTLIADGVGGGIQTVATFIPVIGCLYLFLSLLESSGYMARAAFVLDKVMQKIGLPGKAFVPLVLGF GCNVPAIMATRTLEQERERKLAASMAPFMSCGARLPVYALFAAAFFPENGQNVVFGLYFLGILAAVFTGLLLKHTIYPGR SDTFIMEIPDYEFPTVRNIMIKTWQKLKRFVLGAGKTIVVVVTILSFFNSLGMDGSFGNEDSENSVLSKAAQIVTPILAP IGIQEDNWPATVGIITGIFAKEAVVGTLNSLYADPAGDDAEFNLMASLEEAVMSIPENLTGLSYSDPLGVEVGDLTDSAA VAADQGVERSIFGNLQTYFVTSASAMAYLIFILLYTPCVAAMGAYMREFGRQYSYFIAGWTMLLAYVSSTLFYQIANFSN APMTSSMWIAISLAAMAVTYLALKRKSREVENQEAALV >Mature_758_residues MQYQVLTVGNPNSGKTTLFNGLTGAKQQVGNWAGVTVEKKTGKYICSGDEFLLTDLPGIYALDSGNDVNSLDETIASRAV LTHDADVIINVVDASCLERSLYMTLQLRELGRPMIVVLNKMDVLKRQRQVLDIKGLEKTLGCPVLALSANNNGQVHMFKE KLHKSIAQGIKMAPLELSYGDRVEAAIKEASHLFSSKYASSRSLAIRALENDALVLNTLEADKRNAIANIANVLTTEVEA DFHIADCRYTFLHQLCQKLRRQEGGLSHSVSEKIDSVILNKWVGIPFFFFVMYLMFMFSINIGSAFIDFFDIGVGALLVD GSHYLLDNHLPVWLVTLIADGVGGGIQTVATFIPVIGCLYLFLSLLESSGYMARAAFVLDKVMQKIGLPGKAFVPLVLGF GCNVPAIMATRTLEQERERKLAASMAPFMSCGARLPVYALFAAAFFPENGQNVVFGLYFLGILAAVFTGLLLKHTIYPGR SDTFIMEIPDYEFPTVRNIMIKTWQKLKRFVLGAGKTIVVVVTILSFFNSLGMDGSFGNEDSENSVLSKAAQIVTPILAP IGIQEDNWPATVGIITGIFAKEAVVGTLNSLYADPAGDDAEFNLMASLEEAVMSIPENLTGLSYSDPLGVEVGDLTDSAA VAADQGVERSIFGNLQTYFVTSASAMAYLIFILLYTPCVAAMGAYMREFGRQYSYFIAGWTMLLAYVSSTLFYQIANFSN APMTSSMWIAISLAAMAVTYLALKRKSREVENQEAALV
Specific function: Fe(2+) uptake system, probably driven by GTP [H]
COG id: COG0370
COG function: function code P; Fe2+ transport system protein B
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the feoB (TC 9.A.8) family [H]
Homologues:
Organism=Escherichia coli, GI1789813, Length=756, Percent_Identity=42.4603174603175, Blast_Score=563, Evalue=1e-161,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003373 - InterPro: IPR011640 - InterPro: IPR011619 - InterPro: IPR011642 - InterPro: IPR006073 [H]
Pfam domain/function: PF07664 FeoB_C; PF02421 FeoB_N; PF07670 Gate [H]
EC number: NA
Molecular weight: Translated: 82752; Mature: 82752
Theoretical pI: Translated: 5.29; Mature: 5.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQYQVLTVGNPNSGKTTLFNGLTGAKQQVGNWAGVTVEKKTGKYICSGDEFLLTDLPGIY CCEEEEEECCCCCCCEEEECCCCHHHHHCCCCCCEEEECCCCCEEECCCCEEEECCCCEE ALDSGNDVNSLDETIASRAVLTHDADVIINVVDASCLERSLYMTLQLRELGRPMIVVLNK EECCCCCCHHHHHHHHHHHHHCCCCHHEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEHH MDVLKRQRQVLDIKGLEKTLGCPVLALSANNNGQVHMFKEKLHKSIAQGIKMAPLELSYG HHHHHHHHHHHHHCCHHHHHCCCEEEEECCCCCCEEHHHHHHHHHHHCCCEECCEECCCC DRVEAAIKEASHLFSSKYASSRSLAIRALENDALVLNTLEADKRNAIANIANVLTTEVEA CHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHCC DFHIADCRYTFLHQLCQKLRRQEGGLSHSVSEKIDSVILNKWVGIPFFFFVMYLMFMFSI CEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH NIGSAFIDFFDIGVGALLVDGSHYLLDNHLPVWLVTLIADGVGGGIQTVATFIPVIGCLY CCHHHHHHHHHHCCCEEEECCCEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH LFLSLLESSGYMARAAFVLDKVMQKIGLPGKAFVPLVLGFGCNVPAIMATRTLEQERERK HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHH LAASMAPFMSCGARLPVYALFAAAFFPENGQNVVFGLYFLGILAAVFTGLLLKHTIYPGR HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC SDTFIMEIPDYEFPTVRNIMIKTWQKLKRFVLGAGKTIVVVVTILSFFNSLGMDGSFGNE CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC DSENSVLSKAAQIVTPILAPIGIQEDNWPATVGIITGIFAKEAVVGTLNSLYADPAGDDA CCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC EFNLMASLEEAVMSIPENLTGLSYSDPLGVEVGDLTDSAAVAADQGVERSIFGNLQTYFV CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHCCCCHHHHCCCHHHEE TSASAMAYLIFILLYTPCVAAMGAYMREFGRQYSYFIAGWTMLLAYVSSTLFYQIANFSN EHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC APMTSSMWIAISLAAMAVTYLALKRKSREVENQEAALV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MQYQVLTVGNPNSGKTTLFNGLTGAKQQVGNWAGVTVEKKTGKYICSGDEFLLTDLPGIY CCEEEEEECCCCCCCEEEECCCCHHHHHCCCCCCEEEECCCCCEEECCCCEEEECCCCEE ALDSGNDVNSLDETIASRAVLTHDADVIINVVDASCLERSLYMTLQLRELGRPMIVVLNK EECCCCCCHHHHHHHHHHHHHCCCCHHEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEHH MDVLKRQRQVLDIKGLEKTLGCPVLALSANNNGQVHMFKEKLHKSIAQGIKMAPLELSYG HHHHHHHHHHHHHCCHHHHHCCCEEEEECCCCCCEEHHHHHHHHHHHCCCEECCEECCCC DRVEAAIKEASHLFSSKYASSRSLAIRALENDALVLNTLEADKRNAIANIANVLTTEVEA CHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHCC DFHIADCRYTFLHQLCQKLRRQEGGLSHSVSEKIDSVILNKWVGIPFFFFVMYLMFMFSI CEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH NIGSAFIDFFDIGVGALLVDGSHYLLDNHLPVWLVTLIADGVGGGIQTVATFIPVIGCLY CCHHHHHHHHHHCCCEEEECCCEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH LFLSLLESSGYMARAAFVLDKVMQKIGLPGKAFVPLVLGFGCNVPAIMATRTLEQERERK HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHH LAASMAPFMSCGARLPVYALFAAAFFPENGQNVVFGLYFLGILAAVFTGLLLKHTIYPGR HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC SDTFIMEIPDYEFPTVRNIMIKTWQKLKRFVLGAGKTIVVVVTILSFFNSLGMDGSFGNE CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC DSENSVLSKAAQIVTPILAPIGIQEDNWPATVGIITGIFAKEAVVGTLNSLYADPAGDDA CCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC EFNLMASLEEAVMSIPENLTGLSYSDPLGVEVGDLTDSAAVAADQGVERSIFGNLQTYFV CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHCCCCHHHHCCCHHHEE TSASAMAYLIFILLYTPCVAAMGAYMREFGRQYSYFIAGWTMLLAYVSSTLFYQIANFSN EHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC APMTSSMWIAISLAAMAVTYLALKRKSREVENQEAALV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Fe (II) [Periplasm] [C]
Specific reaction: Fe (II) [Periplasm] = Fe (II) [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA