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The map label for this gene is clpS

Identifier: 209695650

GI number: 209695650

Start: 2380544

End: 2380864

Strand: Direct

Name: clpS

Synonym: VSAL_I2213

Alternate gene names: 209695650

Gene position: 2380544-2380864 (Clockwise)

Preceding gene: 209695647

Following gene: 209695651

Centisome position: 71.59

GC content: 36.76

Gene sequence:

>321_bases
ATGAGTAAATTCTATGAATGGATTTCTCCTGATTCAGATGTTCTGGAACTGGAGAAAACAGGTTTAAAGCCGCCGCCGAT
GTATAAGGTAGTTTTAAATAATGATGATTACACTCCAATGGAGTTTGTTGTTGAAGTTTTAGATAAATTTTTTTCCATGG
ATTTGGAAAAAGCGACACAATTAATGCTTACTGTGCATTATGAAGGGAAAGCAGTATGTGGGGTTTTTACTGCTGAAGTT
GCTGAAACTAAAGTTGCGCAAGTAAACATTTATTCGCGTGATAATGAGCACCCACTACTGTGTACAATGGAGCAAGCTTA
A

Upstream 100 bases:

>100_bases
TCACATCTTTTGTTTGATGTAACTCCTCGTCTAGATTAGGCTGAATAGTAGGAGATACCTTGCAGTATCAAAAATGTTTT
TTAACGAATTAGTTGCCGAC

Downstream 100 bases:

>100_bases
GTTTGTTCGTTACACCATCATTTGGTGTTTTGGGAGGTTCCTATGCTAAATAAAGAATTAGAAGCGAGTTTAAACAGTGC
GTTTGCTCGTGCAAGAGAAA

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 105

Protein sequence:

>106_residues
MSKFYEWISPDSDVLELEKTGLKPPPMYKVVLNNDDYTPMEFVVEVLDKFFSMDLEKATQLMLTVHYEGKAVCGVFTAEV
AETKVAQVNIYSRDNEHPLLCTMEQA

Sequences:

>Translated_106_residues
MSKFYEWISPDSDVLELEKTGLKPPPMYKVVLNNDDYTPMEFVVEVLDKFFSMDLEKATQLMLTVHYEGKAVCGVFTAEV
AETKVAQVNIYSRDNEHPLLCTMEQA
>Mature_105_residues
SKFYEWISPDSDVLELEKTGLKPPPMYKVVLNNDDYTPMEFVVEVLDKFFSMDLEKATQLMLTVHYEGKAVCGVFTAEVA
ETKVAQVNIYSRDNEHPLLCTMEQA

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family

Homologues:

Organism=Escherichia coli, GI1787108, Length=106, Percent_Identity=67.9245283018868, Blast_Score=154, Evalue=8e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPS_ALISL (B6EIX3)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002263579.1
- GeneID:   6988355
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I2213
- HOGENOM:   HBG644923
- OMA:   LMNDDYT
- ProtClustDB:   PRK00033
- HAMAP:   MF_00302
- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719
- Gene3D:   G3DSA:3.30.1390.10

Pfam domain/function: PF02617 ClpS; SSF54736 Ribosomal_L7/12_C/ClpS-like

EC number: NA

Molecular weight: Translated: 12143; Mature: 12012

Theoretical pI: Translated: 4.24; Mature: 4.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKFYEWISPDSDVLELEKTGLKPPPMYKVVLNNDDYTPMEFVVEVLDKFFSMDLEKATQ
CCCCCCCCCCCCCEEHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHCEE
LMLTVHYEGKAVCGVFTAEVAETKVAQVNIYSRDNEHPLLCTMEQA
EEEEEEECCCEEEEEEEHHHHHCEEEEEEEEECCCCCCEEEEECCC
>Mature Secondary Structure 
SKFYEWISPDSDVLELEKTGLKPPPMYKVVLNNDDYTPMEFVVEVLDKFFSMDLEKATQ
CCCCCCCCCCCCEEHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHCEE
LMLTVHYEGKAVCGVFTAEVAETKVAQVNIYSRDNEHPLLCTMEQA
EEEEEEECCCEEEEEEEHHHHHCEEEEEEEEECCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA