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The map label for this gene is ydiU [C]

Identifier: 209695647

GI number: 209695647

Start: 2377762

End: 2379219

Strand: Direct

Name: ydiU [C]

Synonym: VSAL_I2210

Alternate gene names: 209695647

Gene position: 2377762-2379219 (Clockwise)

Preceding gene: 209695642

Following gene: 209695650

Centisome position: 71.51

GC content: 39.78

Gene sequence:

>1458_bases
ATGTCGATTTGGAATTCCCTTTCACTTAGTACTCGTTATTCTGAGCTTCCTCCACTTCTCTTTACTCATGTACCGCCACA
ACCGTTAAACAATGTCCATTGGATAATGTGGAATGAAAAACTCGCTAAACGGTTTAATTTGCCTTTAGATCCTGCGGCAG
ATGCTGAGTTATTATCTGGTTTTTCTGGAGAGGTTGTTCCGCCTCAATTTTCTCCTTTGGCAATGAAATACGCTGGGCAT
CAATTTGGCAGTTACAATCCTGATTTAGGTGATGGTCGGGGGTTATTACTGGCAGAGATCAAAGATAAAGCCGGTGCCAG
TTTTGATATTCATTTAAAAGGGGCAGGCCGAACACCTTATTCTCGTTCAGGGGATGGGAGGGCGGTATTACGATCGACGA
TTCGAGAGTATTTGTGCAGCGAAGCGATGTTCGGATTAGGTATTCCTACCACAAGAGCGTTAGGGATGATGGGTAGCGAT
ACGCCTGTTTATCGAGAAGGGTATGAAACTGGAGCATTGTTACTTCGTGTGGCAGAAACTCATGTTCGCTTTGGTCATTT
TGAGCATCTCTTTTATTCGAATTTATTGGCGGAACATAAATTATTAGCGGACAAAGTCATTGAATGGCATTTTCCTGATT
GCTTAGATAATGAGAATCCTTATGCCGTTATGTTTAATGAGATCGTTGATCGTACGGCTAAGATGATTGCACATTGGCAA
GCGGTGGGTTTTGCTCATGGTGTAATGAATACGGACAATATGTCTATCATTGGGCAAACATTTGATTATGGCCCTTTTGG
CTTTCTTGATGATTATGAACCAGGATACATTTGTAACCATTCTGACTATCAAGGACGTTATGCATTTAATCAACAACCAA
GAATTGGCTTATGGAATCTATCTGCCCTTGCTCATGCTTTATCTCCACTGATTGATAAGGCCGATTTAGATCAAGCACTA
GAACAATACGAAGTGCAATTACATGGCTATTTTAGTCAATTGATGAGACAAAAATTAGGGCTAATAACAAAGCAAGACGG
AGATAGTCGATTATTTGAATCCATGTTTGAATTATTGTCTCAAAATTCGGTGGATTACACGCGTTTTTTACGAGAGTTAT
CAAATGTTGATACTCATAATGAGCAAGCGATTATTGATTTATTTATCGATCGAGATGCGGCGAAATTATGGGTTAGTTTA
TACATAACTCGTTGTGAGAAAGAGCATGAGACAGTGGCCTCTCGATGTAAAAAAATGCGAGAAGTTAACCCTAAATATAT
TCTTCGAAACTACCTAGCACAGCAAGCGATAGATAAAGCACAAGAAGGGGACTATAGCGAACTAGAAGCTTTGAGTTTAT
TGCTTCGGTCGCCTTTTGATGAACATATTGAATTTGAACATTATGCGAATTTACCTCCGAGTTGGGGTAAGAAAATGGAA
ATAAGTTGTTCGTCATAA

Upstream 100 bases:

>100_bases
AGCCGCAATAACTGAAAAGTTATTGCGGCTTTTTTCATATCTGTCATATCCATTTTTAATATGCTAGCGTTAGCTTAATT
TACTTTTAATGGATTAAATG

Downstream 100 bases:

>100_bases
CGGAAATAAGCAGCTAGGTTAGCTGCTTATTTTTCATCTGATATTTATTGCTTCTCTTTCAGATCATGGAGCATCAGTTC
AGTGACTTCATCTAAAGAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 485; Mature: 484

Protein sequence:

>485_residues
MSIWNSLSLSTRYSELPPLLFTHVPPQPLNNVHWIMWNEKLAKRFNLPLDPAADAELLSGFSGEVVPPQFSPLAMKYAGH
QFGSYNPDLGDGRGLLLAEIKDKAGASFDIHLKGAGRTPYSRSGDGRAVLRSTIREYLCSEAMFGLGIPTTRALGMMGSD
TPVYREGYETGALLLRVAETHVRFGHFEHLFYSNLLAEHKLLADKVIEWHFPDCLDNENPYAVMFNEIVDRTAKMIAHWQ
AVGFAHGVMNTDNMSIIGQTFDYGPFGFLDDYEPGYICNHSDYQGRYAFNQQPRIGLWNLSALAHALSPLIDKADLDQAL
EQYEVQLHGYFSQLMRQKLGLITKQDGDSRLFESMFELLSQNSVDYTRFLRELSNVDTHNEQAIIDLFIDRDAAKLWVSL
YITRCEKEHETVASRCKKMREVNPKYILRNYLAQQAIDKAQEGDYSELEALSLLLRSPFDEHIEFEHYANLPPSWGKKME
ISCSS

Sequences:

>Translated_485_residues
MSIWNSLSLSTRYSELPPLLFTHVPPQPLNNVHWIMWNEKLAKRFNLPLDPAADAELLSGFSGEVVPPQFSPLAMKYAGH
QFGSYNPDLGDGRGLLLAEIKDKAGASFDIHLKGAGRTPYSRSGDGRAVLRSTIREYLCSEAMFGLGIPTTRALGMMGSD
TPVYREGYETGALLLRVAETHVRFGHFEHLFYSNLLAEHKLLADKVIEWHFPDCLDNENPYAVMFNEIVDRTAKMIAHWQ
AVGFAHGVMNTDNMSIIGQTFDYGPFGFLDDYEPGYICNHSDYQGRYAFNQQPRIGLWNLSALAHALSPLIDKADLDQAL
EQYEVQLHGYFSQLMRQKLGLITKQDGDSRLFESMFELLSQNSVDYTRFLRELSNVDTHNEQAIIDLFIDRDAAKLWVSL
YITRCEKEHETVASRCKKMREVNPKYILRNYLAQQAIDKAQEGDYSELEALSLLLRSPFDEHIEFEHYANLPPSWGKKME
ISCSS
>Mature_484_residues
SIWNSLSLSTRYSELPPLLFTHVPPQPLNNVHWIMWNEKLAKRFNLPLDPAADAELLSGFSGEVVPPQFSPLAMKYAGHQ
FGSYNPDLGDGRGLLLAEIKDKAGASFDIHLKGAGRTPYSRSGDGRAVLRSTIREYLCSEAMFGLGIPTTRALGMMGSDT
PVYREGYETGALLLRVAETHVRFGHFEHLFYSNLLAEHKLLADKVIEWHFPDCLDNENPYAVMFNEIVDRTAKMIAHWQA
VGFAHGVMNTDNMSIIGQTFDYGPFGFLDDYEPGYICNHSDYQGRYAFNQQPRIGLWNLSALAHALSPLIDKADLDQALE
QYEVQLHGYFSQLMRQKLGLITKQDGDSRLFESMFELLSQNSVDYTRFLRELSNVDTHNEQAIIDLFIDRDAAKLWVSLY
ITRCEKEHETVASRCKKMREVNPKYILRNYLAQQAIDKAQEGDYSELEALSLLLRSPFDEHIEFEHYANLPPSWGKKMEI
SCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family

Homologues:

Organism=Homo sapiens, GI32880229, Length=407, Percent_Identity=40.2948402948403, Blast_Score=271, Evalue=9e-73,
Organism=Escherichia coli, GI1787999, Length=481, Percent_Identity=49.4802494802495, Blast_Score=470, Evalue=1e-133,
Organism=Saccharomyces cerevisiae, GI6325034, Length=445, Percent_Identity=31.685393258427, Blast_Score=190, Evalue=4e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2210_ALISL (B6EIM5)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002263576.1
- GeneID:   6988162
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I2210
- HOGENOM:   HBG683993
- OMA:   THIRFGH
- ProtClustDB:   PRK00029
- HAMAP:   MF_00692
- InterPro:   IPR003846

Pfam domain/function: PF02696 UPF0061

EC number: NA

Molecular weight: Translated: 55169; Mature: 55038

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIWNSLSLSTRYSELPPLLFTHVPPQPLNNVHWIMWNEKLAKRFNLPLDPAADAELLSG
CCCCCCCCCCCCHHHCCCEEEECCCCCCCCCCEEEEECHHHHHHCCCCCCCCCCHHHHCC
FSGEVVPPQFSPLAMKYAGHQFGSYNPDLGDGRGLLLAEIKDKAGASFDIHLKGAGRTPY
CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEHHCCCCEEEEEEECCCCCCC
SRSGDGRAVLRSTIREYLCSEAMFGLGIPTTRALGMMGSDTPVYREGYETGALLLRVAET
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHH
HVRFGHFEHLFYSNLLAEHKLLADKVIEWHFPDCLDNENPYAVMFNEIVDRTAKMIAHWQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEHHHHHHHHHHHHHHHHH
AVGFAHGVMNTDNMSIIGQTFDYGPFGFLDDYEPGYICNHSDYQGRYAFNQQPRIGLWNL
HHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEECCCCCCCEEHH
SALAHALSPLIDKADLDQALEQYEVQLHGYFSQLMRQKLGLITKQDGDSRLFESMFELLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCHHHHHHHHHHHHC
QNSVDYTRFLRELSNVDTHNEQAIIDLFIDRDAAKLWVSLYITRCEKEHETVASRCKKMR
CCCCHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVNPKYILRNYLAQQAIDKAQEGDYSELEALSLLLRSPFDEHIEFEHYANLPPSWGKKME
HCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHCCHHHHCCCCCCCCCEEE
ISCSS
EEECC
>Mature Secondary Structure 
SIWNSLSLSTRYSELPPLLFTHVPPQPLNNVHWIMWNEKLAKRFNLPLDPAADAELLSG
CCCCCCCCCCCHHHCCCEEEECCCCCCCCCCEEEEECHHHHHHCCCCCCCCCCHHHHCC
FSGEVVPPQFSPLAMKYAGHQFGSYNPDLGDGRGLLLAEIKDKAGASFDIHLKGAGRTPY
CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEHHCCCCEEEEEEECCCCCCC
SRSGDGRAVLRSTIREYLCSEAMFGLGIPTTRALGMMGSDTPVYREGYETGALLLRVAET
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHH
HVRFGHFEHLFYSNLLAEHKLLADKVIEWHFPDCLDNENPYAVMFNEIVDRTAKMIAHWQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEHHHHHHHHHHHHHHHHH
AVGFAHGVMNTDNMSIIGQTFDYGPFGFLDDYEPGYICNHSDYQGRYAFNQQPRIGLWNL
HHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEECCCCCCCEEHH
SALAHALSPLIDKADLDQALEQYEVQLHGYFSQLMRQKLGLITKQDGDSRLFESMFELLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCHHHHHHHHHHHHC
QNSVDYTRFLRELSNVDTHNEQAIIDLFIDRDAAKLWVSLYITRCEKEHETVASRCKKMR
CCCCHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVNPKYILRNYLAQQAIDKAQEGDYSELEALSLLLRSPFDEHIEFEHYANLPPSWGKKME
HCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHCCHHHHCCCCCCCCCEEE
ISCSS
EEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA