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The map label for this gene is yedQ [H]

Identifier: 209695594

GI number: 209695594

Start: 2310236

End: 2311708

Strand: Reverse

Name: yedQ [H]

Synonym: VSAL_I2153

Alternate gene names: 209695594

Gene position: 2311708-2310236 (Counterclockwise)

Preceding gene: 209695595

Following gene: 209695591

Centisome position: 69.52

GC content: 34.22

Gene sequence:

>1473_bases
ATGCCCAAATCTAATTTAAAACACATCTTTCTAATCCCAACACTGTTCTTTGTGTTGATCGTGGGGTTTGTTTTAAATAA
TCACCTTGGTGCAGTCCAACGACAAGTGAATCGAGAATATGATCGTATTATCGATTCACTTCAACGAACAATAAAAGTCA
TTATTTCTTTAGATTACAACCTCTCTCAAATGTATAAACAAGAAACGGGTGAATTTTATAATCATAATTTTGAGATGGAT
GAGAAGGCCGGACTTTGTGTTATTCGTCCCAGTAACGATCTTGATGCTGTCATGGTTAACCAAGGTATCTCGGTGCCTGA
AAGTCGCTTAGATTATAGTATTGCTGGCAGTGAAGATTTATGTGACGAGAATTCAGAATTATATAAAATAGCGTCTAAAA
AAATCGCCTTGGCACCTGTAATTTCCTTCATTCATGACTACGAAAATTATCTTCATGGCATCTATTTTATTTCAAAATAT
AATTACATCATTTCAGCCCCTAAAGAAATAGCAGAAAATCTAACGAAACAAAGTTTAGAGACGATTTACACTAGACCATA
CTGGAAGAACAGTATGAAAAATGATAATGAAAGGCACATTACATTTACACCTCCCTATACTGATGCTTTTTTTGATGGGC
TAGAGGTTCTTACTTTCTCAACGCCTATTTATTATAAAGATTTATTTAAAGGTGTTCTGGTTATTGATTTATCGGTGGAT
AAACTATTACGTTCTAGTAATGACATATCTCAGCATATTCAATTGTTAGATAGCGATGAATATGAACGCTTTGAACAATA
CCGATTTATGCAGCCAGTTATTCTCAATGACACTAATTTTACGTATTTTCTGTATTATAAAAGCTCAATAAAAGAAGAGA
TCAAAAGTTTCTTTGTTCATGATGCAAAAAGTCTCATTTTAATTTTTGTCACTTATATCTTAGCGCTTCTATCTATGTTT
TATTACCAAACTCGATTGTCACAGAATTATTATCGTGATTTAGCAAAGCAAGATCCAATGACAGGGTTGTATAACCGTCG
AGGGTTTGAAATGAGCTTACAAGATCGTGTGGTTAAAAAGTTTGTTGGTTTTGCTATTTATGACATCGATGACTTTAAGC
AGATTAATGATGTGTTTGGTCATGATGTTGGAGATGAAGCGATTAAGTATGTAGCAAGAATGCTGACTAAGAGTGTGAGA
GACAGTGATATAGTCTCTCGCTTTGGGGGTGAAGAGTTTGTTATCTGCATTAATGCAGATTCAAGAGAAACGCTTGAGAA
TGTATGTGAACGAGTGAGAAAATCAATTCAGGATTCATCAGGTAAAATAGTGAGCGGTGGTTTTACTGTGTCTGGAGGGG
TTTCGATTATTGATTCTCATCAAGACTTTTCATTTGAACACATTATTAAAAAAGCCGATGATTTGTTGTATAAAGCCAAA
GAAGATGGAAAGAATCGTGTTTACTTTGCATAA

Upstream 100 bases:

>100_bases
TATTTGATTGTCATAAATGTGTTAGGATTTATGTATTTGAGAGATTTTGCACAAAAATATAGGTAGTATATTCGGTTCAA
TTTTTGTTATAGAAGCATTT

Downstream 100 bases:

>100_bases
ACACGATGAGTAATAGCGATTAACTAACGTTCTCTAATTCTTGATTTAAGCGCTCTACAATTAAAGGCGCTTTTTTATGG
CTTCGAATATCCATGAAAAT

Product: membrane associated GGDEF protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 490; Mature: 489

Protein sequence:

>490_residues
MPKSNLKHIFLIPTLFFVLIVGFVLNNHLGAVQRQVNREYDRIIDSLQRTIKVIISLDYNLSQMYKQETGEFYNHNFEMD
EKAGLCVIRPSNDLDAVMVNQGISVPESRLDYSIAGSEDLCDENSELYKIASKKIALAPVISFIHDYENYLHGIYFISKY
NYIISAPKEIAENLTKQSLETIYTRPYWKNSMKNDNERHITFTPPYTDAFFDGLEVLTFSTPIYYKDLFKGVLVIDLSVD
KLLRSSNDISQHIQLLDSDEYERFEQYRFMQPVILNDTNFTYFLYYKSSIKEEIKSFFVHDAKSLILIFVTYILALLSMF
YYQTRLSQNYYRDLAKQDPMTGLYNRRGFEMSLQDRVVKKFVGFAIYDIDDFKQINDVFGHDVGDEAIKYVARMLTKSVR
DSDIVSRFGGEEFVICINADSRETLENVCERVRKSIQDSSGKIVSGGFTVSGGVSIIDSHQDFSFEHIIKKADDLLYKAK
EDGKNRVYFA

Sequences:

>Translated_490_residues
MPKSNLKHIFLIPTLFFVLIVGFVLNNHLGAVQRQVNREYDRIIDSLQRTIKVIISLDYNLSQMYKQETGEFYNHNFEMD
EKAGLCVIRPSNDLDAVMVNQGISVPESRLDYSIAGSEDLCDENSELYKIASKKIALAPVISFIHDYENYLHGIYFISKY
NYIISAPKEIAENLTKQSLETIYTRPYWKNSMKNDNERHITFTPPYTDAFFDGLEVLTFSTPIYYKDLFKGVLVIDLSVD
KLLRSSNDISQHIQLLDSDEYERFEQYRFMQPVILNDTNFTYFLYYKSSIKEEIKSFFVHDAKSLILIFVTYILALLSMF
YYQTRLSQNYYRDLAKQDPMTGLYNRRGFEMSLQDRVVKKFVGFAIYDIDDFKQINDVFGHDVGDEAIKYVARMLTKSVR
DSDIVSRFGGEEFVICINADSRETLENVCERVRKSIQDSSGKIVSGGFTVSGGVSIIDSHQDFSFEHIIKKADDLLYKAK
EDGKNRVYFA
>Mature_489_residues
PKSNLKHIFLIPTLFFVLIVGFVLNNHLGAVQRQVNREYDRIIDSLQRTIKVIISLDYNLSQMYKQETGEFYNHNFEMDE
KAGLCVIRPSNDLDAVMVNQGISVPESRLDYSIAGSEDLCDENSELYKIASKKIALAPVISFIHDYENYLHGIYFISKYN
YIISAPKEIAENLTKQSLETIYTRPYWKNSMKNDNERHITFTPPYTDAFFDGLEVLTFSTPIYYKDLFKGVLVIDLSVDK
LLRSSNDISQHIQLLDSDEYERFEQYRFMQPVILNDTNFTYFLYYKSSIKEEIKSFFVHDAKSLILIFVTYILALLSMFY
YQTRLSQNYYRDLAKQDPMTGLYNRRGFEMSLQDRVVKKFVGFAIYDIDDFKQINDVFGHDVGDEAIKYVARMLTKSVRD
SDIVSRFGGEEFVICINADSRETLENVCERVRKSIQDSSGKIVSGGFTVSGGVSIIDSHQDFSFEHIIKKADDLLYKAKE
DGKNRVYFA

Specific function: Involves in the regulation of cellulose production [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=175, Percent_Identity=37.7142857142857, Blast_Score=106, Evalue=4e-24,
Organism=Escherichia coli, GI1786584, Length=196, Percent_Identity=35.2040816326531, Blast_Score=105, Evalue=9e-24,
Organism=Escherichia coli, GI1787262, Length=191, Percent_Identity=31.9371727748691, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI87082007, Length=217, Percent_Identity=30.8755760368664, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI145693134, Length=159, Percent_Identity=34.5911949685535, Blast_Score=95, Evalue=8e-21,
Organism=Escherichia coli, GI87081974, Length=297, Percent_Identity=28.6195286195286, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=32.9268292682927, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1787802, Length=189, Percent_Identity=30.1587301587302, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1788381, Length=164, Percent_Identity=28.6585365853659, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788085, Length=162, Percent_Identity=31.4814814814815, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787541, Length=170, Percent_Identity=29.4117647058824, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787056, Length=151, Percent_Identity=29.1390728476821, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 56869; Mature: 56738

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKSNLKHIFLIPTLFFVLIVGFVLNNHLGAVQRQVNREYDRIIDSLQRTIKVIISLDYN
CCCCCCCEEEHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LSQMYKQETGEFYNHNFEMDEKAGLCVIRPSNDLDAVMVNQGISVPESRLDYSIAGSEDL
HHHHHHHHCCHHHCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCHHHCCEEECCCHHC
CDENSELYKIASKKIALAPVISFIHDYENYLHGIYFISKYNYIISAPKEIAENLTKQSLE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEECHHHHHHHHHHHHHH
TIYTRPYWKNSMKNDNERHITFTPPYTDAFFDGLEVLTFSTPIYYKDLFKGVLVIDLSVD
HHHCCCCCCCCCCCCCCCEEEECCCCHHHHHCCHHHEEECCCHHHHHHHCCEEEEEECHH
KLLRSSNDISQHIQLLDSDEYERFEQYRFMQPVILNDTNFTYFLYYKSSIKEEIKSFFVH
HHHHCCCCHHHHHHHHCCHHHHHHHHHHHCCCEEECCCCEEEEEEEHHHHHHHHHHHHHH
DAKSLILIFVTYILALLSMFYYQTRLSQNYYRDLAKQDPMTGLYNRRGFEMSLQDRVVKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHH
FVGFAIYDIDDFKQINDVFGHDVGDEAIKYVARMLTKSVRDSDIVSRFGGEEFVICINAD
HHCCCEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEECCC
SRETLENVCERVRKSIQDSSGKIVSGGFTVSGGVSIIDSHQDFSFEHIIKKADDLLYKAK
CHHHHHHHHHHHHHHHCCCCCCEEECCEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHH
EDGKNRVYFA
CCCCCCEEEC
>Mature Secondary Structure 
PKSNLKHIFLIPTLFFVLIVGFVLNNHLGAVQRQVNREYDRIIDSLQRTIKVIISLDYN
CCCCCCEEEHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LSQMYKQETGEFYNHNFEMDEKAGLCVIRPSNDLDAVMVNQGISVPESRLDYSIAGSEDL
HHHHHHHHCCHHHCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCHHHCCEEECCCHHC
CDENSELYKIASKKIALAPVISFIHDYENYLHGIYFISKYNYIISAPKEIAENLTKQSLE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEECHHHHHHHHHHHHHH
TIYTRPYWKNSMKNDNERHITFTPPYTDAFFDGLEVLTFSTPIYYKDLFKGVLVIDLSVD
HHHCCCCCCCCCCCCCCCEEEECCCCHHHHHCCHHHEEECCCHHHHHHHCCEEEEEECHH
KLLRSSNDISQHIQLLDSDEYERFEQYRFMQPVILNDTNFTYFLYYKSSIKEEIKSFFVH
HHHHCCCCHHHHHHHHCCHHHHHHHHHHHCCCEEECCCCEEEEEEEHHHHHHHHHHHHHH
DAKSLILIFVTYILALLSMFYYQTRLSQNYYRDLAKQDPMTGLYNRRGFEMSLQDRVVKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHH
FVGFAIYDIDDFKQINDVFGHDVGDEAIKYVARMLTKSVRDSDIVSRFGGEEFVICINAD
HHCCCEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEECCC
SRETLENVCERVRKSIQDSSGKIVSGGFTVSGGVSIIDSHQDFSFEHIIKKADDLLYKAK
CHHHHHHHHHHHHHHHCCCCCCEEECCEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHH
EDGKNRVYFA
CCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA