Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695595

Identifier: 209695595

GI number: 209695595

Start: 2311829

End: 2312656

Strand: Reverse

Name: 209695595

Synonym: VSAL_I2154

Alternate gene names: NA

Gene position: 2312656-2311829 (Counterclockwise)

Preceding gene: 209695596

Following gene: 209695594

Centisome position: 69.55

GC content: 37.56

Gene sequence:

>828_bases
ATGACATTTAAGCATGTTGTTGGTTTTGGTGTTGCAGGTAATTTTGCCGGTCATTTAGAGCAGGCCGGTGAAGCTTCTGA
TTTTTTGAGCGTTAAAGTTGAAAACTCAATTCAGCCGAAAGCGTTGTTTCCATTTTACATCCCTTCAGAGAAGGCGGGAT
TTTTATCTCAATATCCGTTGTCTTCAGATACGATTATTCCACCGAATGATGCTGATAATTTACAAATAGAGCCTGAAGTT
GCCATCGTGTTTGATATTGAGTATGAAAATGGAAAGGTAGCTCAGTTAATACCTGTGAAATTTGCAGCTTATAATGATTG
CTCTATTCGCAAGCCGAATGCAAAAAAAATCAGTGAAAAGAAAAATTGGGGAAATCACTCTAAGGGGATTTCTCAAGATT
TTATAGAGCTGTCTTCTTTCTCTAAAGGATGTGAATTGGATGCGTATCGCATTGCCAGTTTTCATGTGCGAGATGGGAAA
ATTAATCGTTATGGTGAAGATAGCGCAGTTATTGACTATAGTTATTTTCATGAACAACTAAGTTCGTGGATCATTGATCG
AATGAACCATCAAAAAGATGAAGGCCCTGCGGAAGATATTTCATTGCATTTGTCGAATGCAGAGTTCCCAAAGCAAACTA
TTATCAGCATTGGTGCAACCCGATATACCCCGTTTGGGGAGTCTAATTTCTTACAGAGTGGGGATAAAAGCATTGTTGTC
GTTTATAATTCAGACAAATATAAACCCGCCAAAATAGAAGAAATGGTACATAATAATCAACTTGAAAAAGACGGAATATC
CTCATTAACTCAATGGGTTAGTGAATGA

Upstream 100 bases:

>100_bases
GCGCAAAGAAATCGTAGAGTTAGATCAGTATCATCGAACTTGAAAATATAATCAGTTAATCTTACTTCTCATTTCTAAGC
GATTAATATAAGAAGTAAGT

Downstream 100 bases:

>100_bases
AAATAGCTTAATGCTTATATTATTTGATTGTCATAAATGTGTTAGGATTTATGTATTTGAGAGATTTTGCACAAAAATAT
AGGTAGTATATTCGGTTCAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MTFKHVVGFGVAGNFAGHLEQAGEASDFLSVKVENSIQPKALFPFYIPSEKAGFLSQYPLSSDTIIPPNDADNLQIEPEV
AIVFDIEYENGKVAQLIPVKFAAYNDCSIRKPNAKKISEKKNWGNHSKGISQDFIELSSFSKGCELDAYRIASFHVRDGK
INRYGEDSAVIDYSYFHEQLSSWIIDRMNHQKDEGPAEDISLHLSNAEFPKQTIISIGATRYTPFGESNFLQSGDKSIVV
VYNSDKYKPAKIEEMVHNNQLEKDGISSLTQWVSE

Sequences:

>Translated_275_residues
MTFKHVVGFGVAGNFAGHLEQAGEASDFLSVKVENSIQPKALFPFYIPSEKAGFLSQYPLSSDTIIPPNDADNLQIEPEV
AIVFDIEYENGKVAQLIPVKFAAYNDCSIRKPNAKKISEKKNWGNHSKGISQDFIELSSFSKGCELDAYRIASFHVRDGK
INRYGEDSAVIDYSYFHEQLSSWIIDRMNHQKDEGPAEDISLHLSNAEFPKQTIISIGATRYTPFGESNFLQSGDKSIVV
VYNSDKYKPAKIEEMVHNNQLEKDGISSLTQWVSE
>Mature_274_residues
TFKHVVGFGVAGNFAGHLEQAGEASDFLSVKVENSIQPKALFPFYIPSEKAGFLSQYPLSSDTIIPPNDADNLQIEPEVA
IVFDIEYENGKVAQLIPVKFAAYNDCSIRKPNAKKISEKKNWGNHSKGISQDFIELSSFSKGCELDAYRIASFHVRDGKI
NRYGEDSAVIDYSYFHEQLSSWIIDRMNHQKDEGPAEDISLHLSNAEFPKQTIISIGATRYTPFGESNFLQSGDKSIVVV
YNSDKYKPAKIEEMVHNNQLEKDGISSLTQWVSE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30798; Mature: 30666

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFKHVVGFGVAGNFAGHLEQAGEASDFLSVKVENSIQPKALFPFYIPSEKAGFLSQYPL
CCCHHEEEECCCCCHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCC
SSDTIIPPNDADNLQIEPEVAIVFDIEYENGKVAQLIPVKFAAYNDCSIRKPNAKKISEK
CCCCEECCCCCCCEEECCCEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCCCHHHHHHH
KNWGNHSKGISQDFIELSSFSKGCELDAYRIASFHVRDGKINRYGEDSAVIDYSYFHEQL
HCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEHHHHHHHH
SSWIIDRMNHQKDEGPAEDISLHLSNAEFPKQTIISIGATRYTPFGESNFLQSGDKSIVV
HHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHEECCEECCCCCCCHHHCCCCCEEEE
VYNSDKYKPAKIEEMVHNNQLEKDGISSLTQWVSE
EECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TFKHVVGFGVAGNFAGHLEQAGEASDFLSVKVENSIQPKALFPFYIPSEKAGFLSQYPL
CCHHEEEECCCCCHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCC
SSDTIIPPNDADNLQIEPEVAIVFDIEYENGKVAQLIPVKFAAYNDCSIRKPNAKKISEK
CCCCEECCCCCCCEEECCCEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCCCHHHHHHH
KNWGNHSKGISQDFIELSSFSKGCELDAYRIASFHVRDGKINRYGEDSAVIDYSYFHEQL
HCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEHHHHHHHH
SSWIIDRMNHQKDEGPAEDISLHLSNAEFPKQTIISIGATRYTPFGESNFLQSGDKSIVV
HHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHEECCEECCCCCCCHHHCCCCCEEEE
VYNSDKYKPAKIEEMVHNNQLEKDGISSLTQWVSE
EECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA