| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695595
Identifier: 209695595
GI number: 209695595
Start: 2311829
End: 2312656
Strand: Reverse
Name: 209695595
Synonym: VSAL_I2154
Alternate gene names: NA
Gene position: 2312656-2311829 (Counterclockwise)
Preceding gene: 209695596
Following gene: 209695594
Centisome position: 69.55
GC content: 37.56
Gene sequence:
>828_bases ATGACATTTAAGCATGTTGTTGGTTTTGGTGTTGCAGGTAATTTTGCCGGTCATTTAGAGCAGGCCGGTGAAGCTTCTGA TTTTTTGAGCGTTAAAGTTGAAAACTCAATTCAGCCGAAAGCGTTGTTTCCATTTTACATCCCTTCAGAGAAGGCGGGAT TTTTATCTCAATATCCGTTGTCTTCAGATACGATTATTCCACCGAATGATGCTGATAATTTACAAATAGAGCCTGAAGTT GCCATCGTGTTTGATATTGAGTATGAAAATGGAAAGGTAGCTCAGTTAATACCTGTGAAATTTGCAGCTTATAATGATTG CTCTATTCGCAAGCCGAATGCAAAAAAAATCAGTGAAAAGAAAAATTGGGGAAATCACTCTAAGGGGATTTCTCAAGATT TTATAGAGCTGTCTTCTTTCTCTAAAGGATGTGAATTGGATGCGTATCGCATTGCCAGTTTTCATGTGCGAGATGGGAAA ATTAATCGTTATGGTGAAGATAGCGCAGTTATTGACTATAGTTATTTTCATGAACAACTAAGTTCGTGGATCATTGATCG AATGAACCATCAAAAAGATGAAGGCCCTGCGGAAGATATTTCATTGCATTTGTCGAATGCAGAGTTCCCAAAGCAAACTA TTATCAGCATTGGTGCAACCCGATATACCCCGTTTGGGGAGTCTAATTTCTTACAGAGTGGGGATAAAAGCATTGTTGTC GTTTATAATTCAGACAAATATAAACCCGCCAAAATAGAAGAAATGGTACATAATAATCAACTTGAAAAAGACGGAATATC CTCATTAACTCAATGGGTTAGTGAATGA
Upstream 100 bases:
>100_bases GCGCAAAGAAATCGTAGAGTTAGATCAGTATCATCGAACTTGAAAATATAATCAGTTAATCTTACTTCTCATTTCTAAGC GATTAATATAAGAAGTAAGT
Downstream 100 bases:
>100_bases AAATAGCTTAATGCTTATATTATTTGATTGTCATAAATGTGTTAGGATTTATGTATTTGAGAGATTTTGCACAAAAATAT AGGTAGTATATTCGGTTCAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 275; Mature: 274
Protein sequence:
>275_residues MTFKHVVGFGVAGNFAGHLEQAGEASDFLSVKVENSIQPKALFPFYIPSEKAGFLSQYPLSSDTIIPPNDADNLQIEPEV AIVFDIEYENGKVAQLIPVKFAAYNDCSIRKPNAKKISEKKNWGNHSKGISQDFIELSSFSKGCELDAYRIASFHVRDGK INRYGEDSAVIDYSYFHEQLSSWIIDRMNHQKDEGPAEDISLHLSNAEFPKQTIISIGATRYTPFGESNFLQSGDKSIVV VYNSDKYKPAKIEEMVHNNQLEKDGISSLTQWVSE
Sequences:
>Translated_275_residues MTFKHVVGFGVAGNFAGHLEQAGEASDFLSVKVENSIQPKALFPFYIPSEKAGFLSQYPLSSDTIIPPNDADNLQIEPEV AIVFDIEYENGKVAQLIPVKFAAYNDCSIRKPNAKKISEKKNWGNHSKGISQDFIELSSFSKGCELDAYRIASFHVRDGK INRYGEDSAVIDYSYFHEQLSSWIIDRMNHQKDEGPAEDISLHLSNAEFPKQTIISIGATRYTPFGESNFLQSGDKSIVV VYNSDKYKPAKIEEMVHNNQLEKDGISSLTQWVSE >Mature_274_residues TFKHVVGFGVAGNFAGHLEQAGEASDFLSVKVENSIQPKALFPFYIPSEKAGFLSQYPLSSDTIIPPNDADNLQIEPEVA IVFDIEYENGKVAQLIPVKFAAYNDCSIRKPNAKKISEKKNWGNHSKGISQDFIELSSFSKGCELDAYRIASFHVRDGKI NRYGEDSAVIDYSYFHEQLSSWIIDRMNHQKDEGPAEDISLHLSNAEFPKQTIISIGATRYTPFGESNFLQSGDKSIVVV YNSDKYKPAKIEEMVHNNQLEKDGISSLTQWVSE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30798; Mature: 30666
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFKHVVGFGVAGNFAGHLEQAGEASDFLSVKVENSIQPKALFPFYIPSEKAGFLSQYPL CCCHHEEEECCCCCHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCC SSDTIIPPNDADNLQIEPEVAIVFDIEYENGKVAQLIPVKFAAYNDCSIRKPNAKKISEK CCCCEECCCCCCCEEECCCEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCCCHHHHHHH KNWGNHSKGISQDFIELSSFSKGCELDAYRIASFHVRDGKINRYGEDSAVIDYSYFHEQL HCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEHHHHHHHH SSWIIDRMNHQKDEGPAEDISLHLSNAEFPKQTIISIGATRYTPFGESNFLQSGDKSIVV HHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHEECCEECCCCCCCHHHCCCCCEEEE VYNSDKYKPAKIEEMVHNNQLEKDGISSLTQWVSE EECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCC >Mature Secondary Structure TFKHVVGFGVAGNFAGHLEQAGEASDFLSVKVENSIQPKALFPFYIPSEKAGFLSQYPL CCHHEEEECCCCCHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCC SSDTIIPPNDADNLQIEPEVAIVFDIEYENGKVAQLIPVKFAAYNDCSIRKPNAKKISEK CCCCEECCCCCCCEEECCCEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCCCHHHHHHH KNWGNHSKGISQDFIELSSFSKGCELDAYRIASFHVRDGKINRYGEDSAVIDYSYFHEQL HCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEHHHHHHHH SSWIIDRMNHQKDEGPAEDISLHLSNAEFPKQTIISIGATRYTPFGESNFLQSGDKSIVV HHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHEECCEECCCCCCCHHHCCCCCEEEE VYNSDKYKPAKIEEMVHNNQLEKDGISSLTQWVSE EECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA