| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695578
Identifier: 209695578
GI number: 209695578
Start: 2288695
End: 2289939
Strand: Reverse
Name: 209695578
Synonym: VSAL_I2137
Alternate gene names: NA
Gene position: 2289939-2288695 (Counterclockwise)
Preceding gene: 209695579
Following gene: 209695577
Centisome position: 68.87
GC content: 42.33
Gene sequence:
>1245_bases ATGTCTATTTTACAAATTGGCGCAGGTGGTGTTGGGTGGGTTATTGCCCATAAAGCGGCGCAAAATAATGACACGCTGGG TGATATCACGATTGCTTCTCGTACCATTGAAAAGTGCGAAAAAATCATCGAGTCAATTAAGGGAAAAAATAACCTAAAAG ATCCGACAAAAAAGTTAGAAGCAAAATCAGTGAACGCCGATGACGTTGAGGCTCTAATTACCCTTATTAATGACGTTCAA CCTGATCTGGTTATTAATGCAGGTCCTCCATGGGTTAATATCGCGATTATGGAAGCGTGTTATCAAGCGAAAGTCTCTTA TTTAGATACCTCAGTTGCTGTGGATTTATGTTCAAAAGGGCAGCAAGTACCAGAAGCGTATGACTGGCAATGGGGTTACC GTGAAAAATTTAAAGAAGCGGGCATTACGGGTATTTTAGGTGCCGGTTTTGATCCGGGTGTAGTGAGTGTATTTGCGGCT TACGCGGTTAAGCATCTGTTTGATGAGATCGACACGATTGATGTCATGGATATTAACAATGGCGATCATGGTAAAAAGTT TGCGACTAACTTCGATCCAGAAACGAATATGCTAGAAATCCAAGGGGATTCTTTCTATTGGGAAAACGAAGAGTGGAGAC AAGTGCCTTGCCATACCCGTATGTTAGAGTTTGATTTTCCACATTGTGGCACCCATAAAGTGTATTCAATGGCGCATGAT GAAGTACGTTCAATGAAAGAGTTTATTCCTGCTAAACGAATTGAATTCTGGATGGGTTTTGGTGATACCTACTTGAACTA CTTTAATTGTATGCGCGATATTGGTCTATTAAGCCCAGAGCCACTGACATTGCATGATGGAACTGTCGTTCAGCCTTTGC ATGTCCTAAAAGCATTGTTACCTGATCCAACCTCTCTTGCCCCGGGTTACACGGGACTAACGTGCATAGGAACGTGGGTA CAAGGTAAGAAAGACAGTAAAGAGCGTAGTGTGTTCATTTATAACAACGCCGATCATGAAGTGGCGTACAAAGACGTAGA GCATCAGGCTATTTCATACACAACAGGGGTTCCCGCTATCACCGCCGCTTTACAGTATTTCCGTGGTGAGTGGGCTGCGG CTGGTGTGTTTAATATGGAGCAGTTAAATCCGGATCCATTCCTAGAAACAATGCCTCAAATTGGTTTAGATTGGCATGTT CAAGAACTCACACCAAAACAGCCAACGATTAATATTTTAAAATAA
Upstream 100 bases:
>100_bases TAACCATACTTAATCCATGTTTAAAGATGTCTGATTTTGAATCTTTGCTGGAAAAAATTAATACGTTGGCCGTAGAACTA TCAAATAAGGGTAAATAATT
Downstream 100 bases:
>100_bases TAGAAATACGATAATAATCGGTGTGATTCTTTGAAAAATTGCATCGGTTTATTCGATGTGCAGAGATGAGTATCATGACA GATCAATTAAAAAAAAGTGA
Product: saccharopine dehydrogenase
Products: NA
Alternate protein names: Carboxynorspermidine Dehydrogenase; Saccharopine Dehydrogenase-Like Protein; Carboxynorspermide Hydratase; Saccharopine Dehydrogenase Family Protein; Acyl Carrier Protein
Number of amino acids: Translated: 414; Mature: 413
Protein sequence:
>414_residues MSILQIGAGGVGWVIAHKAAQNNDTLGDITIASRTIEKCEKIIESIKGKNNLKDPTKKLEAKSVNADDVEALITLINDVQ PDLVINAGPPWVNIAIMEACYQAKVSYLDTSVAVDLCSKGQQVPEAYDWQWGYREKFKEAGITGILGAGFDPGVVSVFAA YAVKHLFDEIDTIDVMDINNGDHGKKFATNFDPETNMLEIQGDSFYWENEEWRQVPCHTRMLEFDFPHCGTHKVYSMAHD EVRSMKEFIPAKRIEFWMGFGDTYLNYFNCMRDIGLLSPEPLTLHDGTVVQPLHVLKALLPDPTSLAPGYTGLTCIGTWV QGKKDSKERSVFIYNNADHEVAYKDVEHQAISYTTGVPAITAALQYFRGEWAAAGVFNMEQLNPDPFLETMPQIGLDWHV QELTPKQPTINILK
Sequences:
>Translated_414_residues MSILQIGAGGVGWVIAHKAAQNNDTLGDITIASRTIEKCEKIIESIKGKNNLKDPTKKLEAKSVNADDVEALITLINDVQ PDLVINAGPPWVNIAIMEACYQAKVSYLDTSVAVDLCSKGQQVPEAYDWQWGYREKFKEAGITGILGAGFDPGVVSVFAA YAVKHLFDEIDTIDVMDINNGDHGKKFATNFDPETNMLEIQGDSFYWENEEWRQVPCHTRMLEFDFPHCGTHKVYSMAHD EVRSMKEFIPAKRIEFWMGFGDTYLNYFNCMRDIGLLSPEPLTLHDGTVVQPLHVLKALLPDPTSLAPGYTGLTCIGTWV QGKKDSKERSVFIYNNADHEVAYKDVEHQAISYTTGVPAITAALQYFRGEWAAAGVFNMEQLNPDPFLETMPQIGLDWHV QELTPKQPTINILK >Mature_413_residues SILQIGAGGVGWVIAHKAAQNNDTLGDITIASRTIEKCEKIIESIKGKNNLKDPTKKLEAKSVNADDVEALITLINDVQP DLVINAGPPWVNIAIMEACYQAKVSYLDTSVAVDLCSKGQQVPEAYDWQWGYREKFKEAGITGILGAGFDPGVVSVFAAY AVKHLFDEIDTIDVMDINNGDHGKKFATNFDPETNMLEIQGDSFYWENEEWRQVPCHTRMLEFDFPHCGTHKVYSMAHDE VRSMKEFIPAKRIEFWMGFGDTYLNYFNCMRDIGLLSPEPLTLHDGTVVQPLHVLKALLPDPTSLAPGYTGLTCIGTWVQ GKKDSKERSVFIYNNADHEVAYKDVEHQAISYTTGVPAITAALQYFRGEWAAAGVFNMEQLNPDPFLETMPQIGLDWHVQ ELTPKQPTINILK
Specific function: Unknown
COG id: COG1748
COG function: function code E; Saccharopine dehydrogenase and related proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46279; Mature: 46148
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSILQIGAGGVGWVIAHKAAQNNDTLGDITIASRTIEKCEKIIESIKGKNNLKDPTKKLE CCEEEECCCCEEEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH AKSVNADDVEALITLINDVQPDLVINAGPPWVNIAIMEACYQAKVSYLDTSVAVDLCSKG HCCCCHHHHHHHHHHHHCCCCCEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC QQVPEAYDWQWGYREKFKEAGITGILGAGFDPGVVSVFAAYAVKHLFDEIDTIDVMDINN CCCCCCCCCCCCHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCC GDHGKKFATNFDPETNMLEIQGDSFYWENEEWRQVPCHTRMLEFDFPHCGTHKVYSMAHD CCCCCCCCCCCCCCCCEEEEECCEEEECCCHHHCCCCHHEEEEECCCCCCCHHHHHHHHH EVRSMKEFIPAKRIEFWMGFGDTYLNYFNCMRDIGLLSPEPLTLHDGTVVQPLHVLKALL HHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHC PDPTSLAPGYTGLTCIGTWVQGKKDSKERSVFIYNNADHEVAYKDVEHQAISYTTGVPAI CCCCCCCCCCCCHHEEEHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHEECCCCHHH TAALQYFRGEWAAAGVFNMEQLNPDPFLETMPQIGLDWHVQELTPKQPTINILK HHHHHHHCCCHHHCCCCCHHHCCCCHHHHHHHHCCCCEEEHHCCCCCCCEECCC >Mature Secondary Structure SILQIGAGGVGWVIAHKAAQNNDTLGDITIASRTIEKCEKIIESIKGKNNLKDPTKKLE CEEEECCCCEEEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH AKSVNADDVEALITLINDVQPDLVINAGPPWVNIAIMEACYQAKVSYLDTSVAVDLCSKG HCCCCHHHHHHHHHHHHCCCCCEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC QQVPEAYDWQWGYREKFKEAGITGILGAGFDPGVVSVFAAYAVKHLFDEIDTIDVMDINN CCCCCCCCCCCCHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCC GDHGKKFATNFDPETNMLEIQGDSFYWENEEWRQVPCHTRMLEFDFPHCGTHKVYSMAHD CCCCCCCCCCCCCCCCEEEEECCEEEECCCHHHCCCCHHEEEEECCCCCCCHHHHHHHHH EVRSMKEFIPAKRIEFWMGFGDTYLNYFNCMRDIGLLSPEPLTLHDGTVVQPLHVLKALL HHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHC PDPTSLAPGYTGLTCIGTWVQGKKDSKERSVFIYNNADHEVAYKDVEHQAISYTTGVPAI CCCCCCCCCCCCHHEEEHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHEECCCCHHH TAALQYFRGEWAAAGVFNMEQLNPDPFLETMPQIGLDWHVQELTPKQPTINILK HHHHHHHCCCHHHCCCCCHHHCCCCHHHHHHHHCCCCEEEHHCCCCCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA