Click here to switch to the map view.

The map label for this gene is nspC

Identifier: 209695577

GI number: 209695577

Start: 2287475

End: 2288620

Strand: Reverse

Name: nspC

Synonym: VSAL_I2136

Alternate gene names: NA

Gene position: 2288620-2287475 (Counterclockwise)

Preceding gene: 209695578

Following gene: 209695575

Centisome position: 68.83

GC content: 38.31

Gene sequence:

>1146_bases
ATGACAGATCAATTAAAAAAAAGTGAATTGAAAACGCCTTATTTTATGATTGATGAAGCGAAGTTAATCGCGAATCTTGA
AGTGGCAAAACGATTAAAAGAACAATCAGGCGTTAAGCTTGTGTTGGCACTTAAATGTTTTTCAACATGGGGTGTTTTTG
ATCTGATTAAACCGTATTTAGACGGTACAACAAGCAGTGGACCTTATGAAGTGAGACTGGGGCACGAAACGTTTGGTGGT
GAGACACACGCTTACAGTGTGGGTTACAGTGAAGACGATGTGAAAGAAGTCATCGAAATTTGTAATAAATTGATCTTTAA
TTCGCAATCTCAGTTGACTGCTTATCGACATTTAGTTGAAGGCAAAGTGTCTGTCGGTCTTAGGTTAAATCCTGGTGTTA
GCTATGCAGGACAAGATCTGGCCAATCCAGCCCGTGAGTTTTCTCGCTTAGGTGTTCAAGCGGATCGCCTTGATACCAAT
GTATTTGAGTATATCAATGGTGTGATGTTTCACATGAATTGTGAGAATAAAAGTGTAGACGCATTTTCGTCACTCCTTGA
TGCCATCTCAGTTCGATTTGGTACTTATTTAGATACTCTTGAATGGGTAAGTCTGGGGGGAGGCGTTTTCTTTACATGGC
CAGATTATGATGTTGATAAGCTCGCAACAGTATTAAAAGCTTTTTCTGATAAACACAAAGTGCAGCTGTATTTAGAGCCG
GGTGAGGCCATTATTACAAAAACGGCCGATTTGGTTGTTAGTGTGGTGGATATTGTTGAAAATGGTAAAAAAACAGCCAT
TGTTGATTCAGCAACAGAAGCGCATCGCTTAGATACATTAATTTATAATGAACCCGCCTCGATACTAGAAGCCTCAGAGC
AAGGTCAATATGAATACATTATCGGTTCATGTTCTTGTTTAGCGGGGGATCAATTTTGTGAAACTCAATTTGAACAACCA
TTACAGATAGGACAAAAATTGCACTTATTAGACAGTGCAGGTTATACCATGGTGAAATTAAACTGGTTTAATCGTTTAAA
AATGCCATCGGTTTATTGTGAAAGACGCTCTGGAAAAATAGATAAACTGAACGAGTTTGATTATTCTGATTTTAAACGTT
CGTTATCTCAGTGGACGATAAGTTAA

Upstream 100 bases:

>100_bases
AGCCAACGATTAATATTTTAAAATAATAGAAATACGATAATAATCGGTGTGATTCTTTGAAAAATTGCATCGGTTTATTC
GATGTGCAGAGATGAGTATC

Downstream 100 bases:

>100_bases
AGAATAACAGACAGATAAGATGGCAATAAGACCGTACGCTTATTGCCATTTTTACTTTAGAACCATTTATTTTGACTCAG
GTTTACTTGGGGTGCTTAAT

Product: carboxynorspermidine decarboxylase

Products: NA

Alternate protein names: Carboxynorspermidine Decarboxylase NspC; Diaminopimelate Decarboxylase; Pyridoxal-Dependent Decarboxylase NspC; LOW QUALITY PROTEIN Orn/DAP/Arg Decarboxylase; Carboxynorspermidine/Carboxyspermidine Decarboxylase; Pyridoxal-Dependent Decarboxylase; Carboxynorspermide Decarboxylase; 3-Oxoacyl-(Acyl-Carrier-Protein) Reductase

Number of amino acids: Translated: 381; Mature: 380

Protein sequence:

>381_residues
MTDQLKKSELKTPYFMIDEAKLIANLEVAKRLKEQSGVKLVLALKCFSTWGVFDLIKPYLDGTTSSGPYEVRLGHETFGG
ETHAYSVGYSEDDVKEVIEICNKLIFNSQSQLTAYRHLVEGKVSVGLRLNPGVSYAGQDLANPAREFSRLGVQADRLDTN
VFEYINGVMFHMNCENKSVDAFSSLLDAISVRFGTYLDTLEWVSLGGGVFFTWPDYDVDKLATVLKAFSDKHKVQLYLEP
GEAIITKTADLVVSVVDIVENGKKTAIVDSATEAHRLDTLIYNEPASILEASEQGQYEYIIGSCSCLAGDQFCETQFEQP
LQIGQKLHLLDSAGYTMVKLNWFNRLKMPSVYCERRSGKIDKLNEFDYSDFKRSLSQWTIS

Sequences:

>Translated_381_residues
MTDQLKKSELKTPYFMIDEAKLIANLEVAKRLKEQSGVKLVLALKCFSTWGVFDLIKPYLDGTTSSGPYEVRLGHETFGG
ETHAYSVGYSEDDVKEVIEICNKLIFNSQSQLTAYRHLVEGKVSVGLRLNPGVSYAGQDLANPAREFSRLGVQADRLDTN
VFEYINGVMFHMNCENKSVDAFSSLLDAISVRFGTYLDTLEWVSLGGGVFFTWPDYDVDKLATVLKAFSDKHKVQLYLEP
GEAIITKTADLVVSVVDIVENGKKTAIVDSATEAHRLDTLIYNEPASILEASEQGQYEYIIGSCSCLAGDQFCETQFEQP
LQIGQKLHLLDSAGYTMVKLNWFNRLKMPSVYCERRSGKIDKLNEFDYSDFKRSLSQWTIS
>Mature_380_residues
TDQLKKSELKTPYFMIDEAKLIANLEVAKRLKEQSGVKLVLALKCFSTWGVFDLIKPYLDGTTSSGPYEVRLGHETFGGE
THAYSVGYSEDDVKEVIEICNKLIFNSQSQLTAYRHLVEGKVSVGLRLNPGVSYAGQDLANPAREFSRLGVQADRLDTNV
FEYINGVMFHMNCENKSVDAFSSLLDAISVRFGTYLDTLEWVSLGGGVFFTWPDYDVDKLATVLKAFSDKHKVQLYLEPG
EAIITKTADLVVSVVDIVENGKKTAIVDSATEAHRLDTLIYNEPASILEASEQGQYEYIIGSCSCLAGDQFCETQFEQPL
QIGQKLHLLDSAGYTMVKLNWFNRLKMPSVYCERRSGKIDKLNEFDYSDFKRSLSQWTIS

Specific function: Unknown

COG id: COG0019

COG function: function code E; Diaminopimelate decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42763; Mature: 42632

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDQLKKSELKTPYFMIDEAKLIANLEVAKRLKEQSGVKLVLALKCFSTWGVFDLIKPYL
CCCCCCHHHCCCCEEEEECHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHCCHHHHHHHHH
DGTTSSGPYEVRLGHETFGGETHAYSVGYSEDDVKEVIEICNKLIFNSQSQLTAYRHLVE
CCCCCCCCEEEEECCHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
GKVSVGLRLNPGVSYAGQDLANPAREFSRLGVQADRLDTNVFEYINGVMFHMNCENKSVD
CCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEEECCCCCHH
AFSSLLDAISVRFGTYLDTLEWVSLGGGVFFTWPDYDVDKLATVLKAFSDKHKVQLYLEP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEECC
GEAIITKTADLVVSVVDIVENGKKTAIVDSATEAHRLDTLIYNEPASILEASEQGQYEYI
CCEEEHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHEECCCHHHHHHCCCCCEEEE
IGSCSCLAGDQFCETQFEQPLQIGQKLHLLDSAGYTMVKLNWFNRLKMPSVYCERRSGKI
EECCHHHCCCHHHHHHHHHHHHHCCEEEEEECCCCEEEEEEHHHCCCCCHHHHHHCCCCC
DKLNEFDYSDFKRSLSQWTIS
CCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
TDQLKKSELKTPYFMIDEAKLIANLEVAKRLKEQSGVKLVLALKCFSTWGVFDLIKPYL
CCCCCHHHCCCCEEEEECHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHCCHHHHHHHHH
DGTTSSGPYEVRLGHETFGGETHAYSVGYSEDDVKEVIEICNKLIFNSQSQLTAYRHLVE
CCCCCCCCEEEEECCHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
GKVSVGLRLNPGVSYAGQDLANPAREFSRLGVQADRLDTNVFEYINGVMFHMNCENKSVD
CCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEEECCCCCHH
AFSSLLDAISVRFGTYLDTLEWVSLGGGVFFTWPDYDVDKLATVLKAFSDKHKVQLYLEP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEECC
GEAIITKTADLVVSVVDIVENGKKTAIVDSATEAHRLDTLIYNEPASILEASEQGQYEYI
CCEEEHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHEECCCHHHHHHCCCCCEEEE
IGSCSCLAGDQFCETQFEQPLQIGQKLHLLDSAGYTMVKLNWFNRLKMPSVYCERRSGKI
EECCHHHCCCHHHHHHHHHHHHHCCEEEEEECCCCEEEEEEHHHCCCCCHHHHHHCCCCC
DKLNEFDYSDFKRSLSQWTIS
CCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA