| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209695535
Identifier: 209695535
GI number: 209695535
Start: 2241398
End: 2241859
Strand: Reverse
Name: 209695535
Synonym: VSAL_I2091
Alternate gene names: NA
Gene position: 2241859-2241398 (Counterclockwise)
Preceding gene: 209695536
Following gene: 209695534
Centisome position: 67.42
GC content: 40.69
Gene sequence:
>462_bases ATGAGACATATTCCAGCGTTAATCGATCTTCTTCCTCATGAAACGCCGTTAGCGTTAGTGGATGAATTGATCGAAGTCAG TGAGTTATCGATTCATTGCCAAGTCACCATTAATGAAAATAATGTCTTTTTTAACCATGAGACTCACACGATTCCAGCTT GGGTTGGGATTGAGTTTATGGCCCAAAGTGTGGCTGGTTGGTCTGGATACCACGCTTGGAAAAAAGGCAATAAGTCCCCG ATAGGATTTTTACTTGGTAGCCGTAAGTATCAAGCAGAATGCAGTGAATTTAAGCAAGGCGACACACTCGACATTTTTGC GGAACAAATATTAGAGAATAATGGCATGGCCGTGTTCAGTTGTTATATTAAACATAACGGTCAGCAATTGGCATCAAGCC AATTAAATGTATTTGTACCGACAGAAGATAAATTAGAAGAGCTCTTAGCGCCAAAGCAGTAG
Upstream 100 bases:
>100_bases TAAAGTTAGTGACTGACCAACGATTAGAAAAACCAGCGATTATCAGTAATTCATTTGCATTTGGTGGCAACAACATCAGC TTAATTTTTGGGTACCAGTC
Downstream 100 bases:
>100_bases TAGAGGAAATCATGATAAGACAAGTATTAGTGACCGGAGCAAGTAAAGGTATTGGTCGCGCAATTTCAGAGCAGTTAGCA AAAGATGGTTTTCATGTGGT
Product: beta-hydroxydecanoyl-ACP dehydrase
Products: NA
Alternate protein names: Beta-Hydroxydecanoyl-ACP Dehydrase; 3-Hydroxylacyl-(Acyl Carrier Protein) Dehydratase; Dehydratase; Beta-Hydroxyacyl-Acyl Carrier Protein-Dehydratase; FabA-Like Domain-Containing Protein; 3-Hydroxy-Fatty Acyl-(Acyl Carrier Protein) Dehydratase; -Hydroxymyristoyl-[Acyl Carrier Protein] Dehydratase; Cation ABC Transporter Permease Protein; Beta-Ketoacyl Synthase
Number of amino acids: Translated: 153; Mature: 153
Protein sequence:
>153_residues MRHIPALIDLLPHETPLALVDELIEVSELSIHCQVTINENNVFFNHETHTIPAWVGIEFMAQSVAGWSGYHAWKKGNKSP IGFLLGSRKYQAECSEFKQGDTLDIFAEQILENNGMAVFSCYIKHNGQQLASSQLNVFVPTEDKLEELLAPKQ
Sequences:
>Translated_153_residues MRHIPALIDLLPHETPLALVDELIEVSELSIHCQVTINENNVFFNHETHTIPAWVGIEFMAQSVAGWSGYHAWKKGNKSP IGFLLGSRKYQAECSEFKQGDTLDIFAEQILENNGMAVFSCYIKHNGQQLASSQLNVFVPTEDKLEELLAPKQ >Mature_153_residues MRHIPALIDLLPHETPLALVDELIEVSELSIHCQVTINENNVFFNHETHTIPAWVGIEFMAQSVAGWSGYHAWKKGNKSP IGFLLGSRKYQAECSEFKQGDTLDIFAEQILENNGMAVFSCYIKHNGQQLASSQLNVFVPTEDKLEELLAPKQ
Specific function: Unknown
COG id: COG4706
COG function: function code I; Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17208; Mature: 17208
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRHIPALIDLLPHETPLALVDELIEVSELSIHCQVTINENNVFFNHETHTIPAWVGIEFM CCCCCHHHHHCCCCCCHHHHHHHHHHHCEEEEEEEEECCCEEEECCCCCCCHHHHHHHHH AQSVAGWSGYHAWKKGNKSPIGFLLGSRKYQAECSEFKQGDTLDIFAEQILENNGMAVFS HHHHCCCCCHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEE CYIKHNGQQLASSQLNVFVPTEDKLEELLAPKQ EEEECCCHHHHCCCCEEEECCHHHHHHHHCCCC >Mature Secondary Structure MRHIPALIDLLPHETPLALVDELIEVSELSIHCQVTINENNVFFNHETHTIPAWVGIEFM CCCCCHHHHHCCCCCCHHHHHHHHHHHCEEEEEEEEECCCEEEECCCCCCCHHHHHHHHH AQSVAGWSGYHAWKKGNKSPIGFLLGSRKYQAECSEFKQGDTLDIFAEQILENNGMAVFS HHHHCCCCCHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEE CYIKHNGQQLASSQLNVFVPTEDKLEELLAPKQ EEEECCCHHHHCCCCEEEECCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA