Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695507

Identifier: 209695507

GI number: 209695507

Start: 2207303

End: 2207992

Strand: Reverse

Name: 209695507

Synonym: VSAL_I2060

Alternate gene names: NA

Gene position: 2207992-2207303 (Counterclockwise)

Preceding gene: 209695508

Following gene: 209695504

Centisome position: 66.4

GC content: 38.55

Gene sequence:

>690_bases
ATGTCATCAGCAAAGCAAAAGGCTCTAAAAAAGATCGCTAAATGTCTTGAACTTGGTAATTCAGCAAATGTGAATGAAGC
CGCTCAAGCCATTAGAATGGCGCATCGCCTTATGCTTAAGTATGGTCTTGAGAAAGATGACATTGAGTTTATCAAAATGG
GGAAAACGCAAAGTACCCATCTTCTTCCTGCCAATGTAGGCAGTAATATTCTAAAAATCATTCGTGGTATCAATACACGA
TTTGGGGTTGAAGCGGTTCTGCTGAACCATAAAGGGCTAAAAAAAGTAGAATTTATTGGTTCTGCTGATCGCGCTATTTT
TGCGGCATTTGCCTTTGATATTGTTTATCGAGAAATGAATGAACAAACAGGCCAATTCAAAAATAGCTTTGCTGGCTCAG
GGACTGGGCAACTTGAAGTCACTCGACGTGTTAATTCATTTTTAGCGGGTTGGATTGAAGGCGCACTTGAAAAACTGCCT
GTCATTGCCCCTGATGATGATTCTGCAAACAAAATTAATGATTACATTGATAAAGAATTTCAAAATATTGATAGAGAAAC
ATTCAAACAGCAGTTAAGAGAAGCAATGGCAAACATTACTGCTGATTATGAAAAAGGATTAAAGAAAGGCAGAACAATTT
CGGTAAGCCGTCCTGTTGGCGGAACTCAAGCCAAGAAATTATTACGCTAA

Upstream 100 bases:

>100_bases
CATTTATTTCATTAAGAACACAAAGTAAGCGCATCTTCTATCTTCCAAATTTTGAAAGAGAAAGGTAGAATATACGCCCC
AAAAAAAGAAAGGATAGATA

Downstream 100 bases:

>100_bases
TACCGCCGTAATCTATTTCCTCTATAAATAAAAATACCACGATTTATTCGTGGTATTTTTTCATTCAGAACCGGCTTCTG
TTTTACACCAGTGTCATTAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MSSAKQKALKKIAKCLELGNSANVNEAAQAIRMAHRLMLKYGLEKDDIEFIKMGKTQSTHLLPANVGSNILKIIRGINTR
FGVEAVLLNHKGLKKVEFIGSADRAIFAAFAFDIVYREMNEQTGQFKNSFAGSGTGQLEVTRRVNSFLAGWIEGALEKLP
VIAPDDDSANKINDYIDKEFQNIDRETFKQQLREAMANITADYEKGLKKGRTISVSRPVGGTQAKKLLR

Sequences:

>Translated_229_residues
MSSAKQKALKKIAKCLELGNSANVNEAAQAIRMAHRLMLKYGLEKDDIEFIKMGKTQSTHLLPANVGSNILKIIRGINTR
FGVEAVLLNHKGLKKVEFIGSADRAIFAAFAFDIVYREMNEQTGQFKNSFAGSGTGQLEVTRRVNSFLAGWIEGALEKLP
VIAPDDDSANKINDYIDKEFQNIDRETFKQQLREAMANITADYEKGLKKGRTISVSRPVGGTQAKKLLR
>Mature_228_residues
SSAKQKALKKIAKCLELGNSANVNEAAQAIRMAHRLMLKYGLEKDDIEFIKMGKTQSTHLLPANVGSNILKIIRGINTRF
GVEAVLLNHKGLKKVEFIGSADRAIFAAFAFDIVYREMNEQTGQFKNSFAGSGTGQLEVTRRVNSFLAGWIEGALEKLPV
IAPDDDSANKINDYIDKEFQNIDRETFKQQLREAMANITADYEKGLKKGRTISVSRPVGGTQAKKLLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25406; Mature: 25274

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSAKQKALKKIAKCLELGNSANVNEAAQAIRMAHRLMLKYGLEKDDIEFIKMGKTQSTH
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCE
LLPANVGSNILKIIRGINTRFGVEAVLLNHKGLKKVEFIGSADRAIFAAFAFDIVYREMN
ECCHHHHHHHHHHHHHCCCHHHHHHHEECCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHH
EQTGQFKNSFAGSGTGQLEVTRRVNSFLAGWIEGALEKLPVIAPDDDSANKINDYIDKEF
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
QNIDRETFKQQLREAMANITADYEKGLKKGRTISVSRPVGGTQAKKLLR
HHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCC
>Mature Secondary Structure 
SSAKQKALKKIAKCLELGNSANVNEAAQAIRMAHRLMLKYGLEKDDIEFIKMGKTQSTH
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCE
LLPANVGSNILKIIRGINTRFGVEAVLLNHKGLKKVEFIGSADRAIFAAFAFDIVYREMN
ECCHHHHHHHHHHHHHCCCHHHHHHHEECCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHH
EQTGQFKNSFAGSGTGQLEVTRRVNSFLAGWIEGALEKLPVIAPDDDSANKINDYIDKEF
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
QNIDRETFKQQLREAMANITADYEKGLKKGRTISVSRPVGGTQAKKLLR
HHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA