Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695508

Identifier: 209695508

GI number: 209695508

Start: 2208223

End: 2208918

Strand: Reverse

Name: 209695508

Synonym: VSAL_I2061

Alternate gene names: NA

Gene position: 2208918-2208223 (Counterclockwise)

Preceding gene: 209695515

Following gene: 209695507

Centisome position: 66.43

GC content: 37.36

Gene sequence:

>696_bases
ATGAAACCTGCGATAAGAAAAAATAAAACAATTACAACTGATGATATTTTATTAACGTTGTGCCGCTCGATGTCAGGCGT
ATTAACGAAGGCAACTCAAAGTTCAGTTAATTACTCAGCCATGGTTCAAAAAATATCGAAAACAAGCTTAAAACCAGACT
TTGGTTGCTTTGTTTTATTTGATGGTGGTTTCTCTGGATTGGTTATCACTAACTTCACAAAAGATGCTGCTCTTGAGCTG
TATACTCGATACATGCAAACAATGGGCATGCCTGCTGAAGAACTTGCTATCTTGCATACCTCAGACGAAGTTGGTGACGT
ATTGGGTGAGTTAATGAACCAAATCGTAGGTGATTTTACGGGTCAAATCCGCAAACAGCTGCAAACCACGATTTCGCAAA
ACCAACCAAAAATGTTGGCCTTAAATAAGCAAGTCATCCTGTCTGTAGATACAAACCTTGATCGCCCTCAAGCACGTCGT
GTTACGTTTACGACTCAAAATAATAATATTTTCTATCTTGAACTAGCGATGGATAAAACCGAATTTATTCAACTTGAAGA
ATTCGAACAAGAAGACGAATTCGATGCTGATGATTTGTTCGAACAGCATAAAGTTGGAAACAATCAGAAAACGGAACAAA
AAATAGAGAATACTCAGGATCTTAACGACTCATTATTTGATGAACTAGGCATTTAA

Upstream 100 bases:

>100_bases
GTTCTTGCTTTAGTATATGGCCCATATTAAGAAAGTCGTCGATTCAATGATCACGCGATATGGCATCAGCTCCTCTTAAC
TCATTTTGATAGAGAACGTT

Downstream 100 bases:

>100_bases
CGCCCTCTCCTTTTTTAGCCACGATTCATTTTATGGTGTTTTTATTTACTTTGATTTTATAAAAACACCCTTATCTCTCT
TCTTCTTTTATCATTTACTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MKPAIRKNKTITTDDILLTLCRSMSGVLTKATQSSVNYSAMVQKISKTSLKPDFGCFVLFDGGFSGLVITNFTKDAALEL
YTRYMQTMGMPAEELAILHTSDEVGDVLGELMNQIVGDFTGQIRKQLQTTISQNQPKMLALNKQVILSVDTNLDRPQARR
VTFTTQNNNIFYLELAMDKTEFIQLEEFEQEDEFDADDLFEQHKVGNNQKTEQKIENTQDLNDSLFDELGI

Sequences:

>Translated_231_residues
MKPAIRKNKTITTDDILLTLCRSMSGVLTKATQSSVNYSAMVQKISKTSLKPDFGCFVLFDGGFSGLVITNFTKDAALEL
YTRYMQTMGMPAEELAILHTSDEVGDVLGELMNQIVGDFTGQIRKQLQTTISQNQPKMLALNKQVILSVDTNLDRPQARR
VTFTTQNNNIFYLELAMDKTEFIQLEEFEQEDEFDADDLFEQHKVGNNQKTEQKIENTQDLNDSLFDELGI
>Mature_231_residues
MKPAIRKNKTITTDDILLTLCRSMSGVLTKATQSSVNYSAMVQKISKTSLKPDFGCFVLFDGGFSGLVITNFTKDAALEL
YTRYMQTMGMPAEELAILHTSDEVGDVLGELMNQIVGDFTGQIRKQLQTTISQNQPKMLALNKQVILSVDTNLDRPQARR
VTFTTQNNNIFYLELAMDKTEFIQLEEFEQEDEFDADDLFEQHKVGNNQKTEQKIENTQDLNDSLFDELGI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26127; Mature: 26127

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPAIRKNKTITTDDILLTLCRSMSGVLTKATQSSVNYSAMVQKISKTSLKPDFGCFVLF
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEE
DGGFSGLVITNFTKDAALELYTRYMQTMGMPAEELAILHTSDEVGDVLGELMNQIVGDFT
CCCCCCEEEECCCHHHHHHHHHHHHHHHCCCHHHEEEEECCHHHHHHHHHHHHHHHHHHH
GQIRKQLQTTISQNQPKMLALNKQVILSVDTNLDRPQARRVTFTTQNNNIFYLELAMDKT
HHHHHHHHHHHHCCCCCEEEECCEEEEEECCCCCCCCCCEEEEEECCCCEEEEEEECCCH
EFIQLEEFEQEDEFDADDLFEQHKVGNNQKTEQKIENTQDLNDSLFDELGI
HHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCC
>Mature Secondary Structure
MKPAIRKNKTITTDDILLTLCRSMSGVLTKATQSSVNYSAMVQKISKTSLKPDFGCFVLF
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEE
DGGFSGLVITNFTKDAALELYTRYMQTMGMPAEELAILHTSDEVGDVLGELMNQIVGDFT
CCCCCCEEEECCCHHHHHHHHHHHHHHHCCCHHHEEEEECCHHHHHHHHHHHHHHHHHHH
GQIRKQLQTTISQNQPKMLALNKQVILSVDTNLDRPQARRVTFTTQNNNIFYLELAMDKT
HHHHHHHHHHHHCCCCCEEEECCEEEEEECCCCCCCCCCEEEEEECCCCEEEEEEECCCH
EFIQLEEFEQEDEFDADDLFEQHKVGNNQKTEQKIENTQDLNDSLFDELGI
HHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA